Wall clock time and date at job start Mon Mar 30 2020 00:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.41596 * 114.00217 * 2 1 4 4 C 1.34778 * 120.00056 * 95.38827 * 3 2 1 5 5 O 1.21552 * 120.00426 * 185.90417 * 4 3 2 6 6 C 1.47892 * 119.99633 * 5.90303 * 4 3 2 7 7 C 1.39911 * 120.02514 * 9.09222 * 6 4 3 8 8 C 1.38336 * 120.35767 * 180.02562 * 7 6 4 9 9 C 1.37752 * 120.41167 * 0.02562 * 8 7 6 10 10 C 1.40752 * 120.03759 * 359.97438 * 9 8 7 11 11 C 1.41438 * 120.17252 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00406 * 29.21323 * 11 10 9 13 13 C 1.39941 * 119.99620 * 209.21268 * 11 10 9 14 14 N 1.30830 * 119.99840 * 9.35368 * 13 11 10 15 15 Si 1.86794 * 120.00048 * 189.34761 * 13 11 10 16 16 H 1.48506 * 109.46817 * 84.99759 * 15 13 11 17 17 H 1.48496 * 109.47190 * 205.00019 * 15 13 11 18 18 H 1.48499 * 109.47177 * 325.00181 * 15 13 11 19 19 C 1.38991 * 120.02077 * 189.11690 * 6 4 3 20 20 C 1.46506 * 120.00655 * 275.39167 * 3 2 1 21 21 C 1.52997 * 109.47115 * 119.99548 * 20 3 2 22 22 C 1.53000 * 109.47246 * 239.99989 * 20 3 2 23 23 H 1.08993 * 109.46997 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47159 * 299.99931 * 1 2 3 25 25 H 1.09000 * 109.47008 * 59.99467 * 1 2 3 26 26 H 1.07998 * 119.82254 * 0.02562 * 7 6 4 27 27 H 1.08004 * 119.79092 * 180.02562 * 8 7 6 28 28 H 1.07994 * 119.97774 * 179.97438 * 9 8 7 29 29 H 0.97000 * 120.00002 * 179.97438 * 14 13 11 30 30 H 1.08001 * 120.21058 * 359.70334 * 19 6 4 31 31 H 1.09007 * 109.46569 * 359.97438 * 20 3 2 32 32 H 1.08998 * 109.46852 * 180.02562 * 21 20 3 33 33 H 1.09003 * 109.47546 * 300.00324 * 21 20 3 34 34 H 1.08994 * 109.47391 * 60.00495 * 21 20 3 35 35 H 1.09001 * 109.46739 * 59.99843 * 22 20 3 36 36 H 1.08998 * 109.46876 * 179.97438 * 22 20 3 37 37 H 1.08994 * 109.46970 * 299.99327 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.3792 1.8646 1.1621 5 8 2.7734 3.0143 1.1751 6 6 2.3102 1.0922 2.4214 7 6 2.0410 -0.2803 2.3870 8 6 1.9743 -1.0093 3.5608 9 6 2.1715 -0.3928 4.7767 10 6 2.4434 0.9872 4.8311 11 6 2.6469 1.6231 6.0780 12 1 3.0577 1.0665 6.9074 13 6 2.3159 2.9734 6.2369 14 7 1.6529 3.5992 5.2987 15 14 2.8207 3.8824 7.7888 16 1 4.2090 4.3874 7.6372 17 1 1.9001 5.0254 8.0146 18 1 2.7545 2.9569 8.9482 19 6 2.5121 1.7295 3.6400 20 6 2.1941 2.0113 -1.2631 21 6 1.4087 3.3238 -1.2263 22 6 3.6811 2.3121 -1.4611 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8844 -0.7734 1.4390 27 1 1.7663 -2.0685 3.5236 28 1 2.1175 -0.9685 5.6888 29 1 1.4231 4.5352 5.4090 30 1 2.7245 2.7880 3.6710 31 1 1.8352 1.3957 -2.0880 32 1 1.5491 3.8576 -2.1662 33 1 0.3493 3.1096 -1.0853 34 1 1.7678 3.9392 -0.4015 35 1 4.2405 1.3770 -1.4873 36 1 3.8218 2.8457 -2.4010 37 1 4.0402 2.9275 -0.6363 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331110244.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:03:48 Heat of formation + Delta-G solvation = -0.747190 kcal Electronic energy + Delta-G solvation = -20318.155476 eV Core-core repulsion = 17256.042353 eV Total energy + Delta-G solvation = -3062.113123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.69867 -37.22348 -36.89086 -34.61989 -33.55735 -30.85686 -29.56548 -29.22530 -27.05871 -26.18021 -25.27891 -23.28233 -21.12890 -20.66842 -19.31803 -17.99821 -16.68634 -15.93222 -15.66809 -15.18680 -14.87809 -14.19065 -13.99486 -13.78730 -13.59768 -13.19549 -13.02018 -12.72513 -12.66179 -12.38853 -11.84338 -11.64108 -11.51863 -11.18740 -11.11208 -11.06855 -11.02920 -10.75045 -10.46974 -10.00365 -9.88826 -9.40296 -9.20572 -8.77402 -8.62446 -7.57013 -7.37369 -6.66837 -4.36375 2.15229 2.27133 2.88347 3.11247 3.13870 3.20597 3.76736 3.98132 4.48581 4.72331 5.04741 5.23597 5.30638 5.35320 5.48785 5.65388 5.66900 5.74984 5.76286 5.93561 5.98570 6.04717 6.22746 6.45182 6.47979 6.66448 6.79160 6.88592 7.06793 7.10524 7.29642 7.45517 7.72465 7.88057 8.00247 8.08159 8.24887 8.57322 8.77403 8.89644 8.91615 10.27530 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.023435 B = 0.006291 C = 0.005379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.521525 B = 4450.028491 C = 5204.108603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.135 6.135 3 N -0.480 5.480 4 C 0.580 3.420 5 O -0.524 6.524 6 C -0.140 4.140 7 C -0.205 4.205 8 C -0.115 4.115 9 C -0.199 4.199 10 C 0.091 3.909 11 C -0.465 4.465 12 H 0.078 0.922 13 C 0.071 3.929 14 N -0.801 5.801 15 Si 0.913 3.087 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.264 1.264 19 C -0.083 4.083 20 C 0.145 3.855 21 C -0.176 4.176 22 C -0.166 4.166 23 H 0.101 0.899 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.132 0.868 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.281 0.719 30 H 0.135 0.865 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -2.830 -10.520 11.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.138 6.138 3 N -0.261 5.261 4 C 0.375 3.625 5 O -0.401 6.401 6 C -0.143 4.143 7 C -0.224 4.224 8 C -0.133 4.133 9 C -0.219 4.219 10 C 0.089 3.911 11 C -0.495 4.495 12 H 0.096 0.904 13 C -0.145 4.145 14 N -0.428 5.428 15 Si 0.737 3.263 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.188 1.188 19 C -0.103 4.103 20 C 0.044 3.956 21 C -0.234 4.234 22 C -0.224 4.224 23 H 0.119 0.881 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.149 0.851 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.684 -2.142 -10.567 10.913 hybrid contribution -0.343 0.314 0.649 0.799 sum -2.027 -1.827 -9.918 10.287 Atomic orbital electron populations 1.23278 0.82471 1.03336 1.01270 1.90540 1.19680 1.07813 1.95747 1.50338 1.59648 1.09565 1.06585 1.19035 0.75315 0.85460 0.82653 1.90672 1.47795 1.16811 1.84842 1.19466 1.09081 0.94165 0.91594 1.21613 1.09148 0.93326 0.98327 1.20569 1.02089 0.97506 0.93152 1.21237 1.08764 0.96003 0.95919 1.17586 0.89512 0.90920 0.93058 1.19515 1.38109 0.94709 0.97168 0.90396 1.25894 0.92867 0.97706 0.98065 1.69749 1.28335 1.11678 1.32992 0.86253 0.79328 0.79063 0.81606 1.19264 1.20359 1.18789 1.21715 0.98317 1.00865 0.89396 1.21209 0.96663 0.92680 0.85047 1.22366 0.99639 0.97687 1.03667 1.22173 0.94834 1.02506 1.02866 0.88122 0.92348 0.93592 0.85116 0.89036 0.88760 0.90801 0.84715 0.89660 0.91821 0.93039 0.89355 0.92339 0.91651 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 10.92 101.05 1.10 1.03 16 2 O -0.13 -2.22 7.56 -11.47 -0.09 -2.30 16 3 N -0.48 -8.61 2.91 -54.73 -0.16 -8.77 16 4 C 0.58 12.84 7.11 -12.31 -0.09 12.76 16 5 O -0.52 -12.45 12.62 5.32 0.07 -12.39 16 6 C -0.14 -3.39 5.86 -105.04 -0.62 -4.01 16 7 C -0.20 -4.51 8.82 -38.92 -0.34 -4.85 16 8 C -0.11 -2.53 10.01 -39.72 -0.40 -2.92 16 9 C -0.20 -4.84 9.78 -38.81 -0.38 -5.22 16 10 C 0.09 2.46 5.55 -106.87 -0.59 1.87 16 11 C -0.46 -12.45 9.06 -37.73 -0.34 -12.79 16 12 H 0.08 1.99 7.86 -52.49 -0.41 1.58 16 13 C 0.07 1.83 5.27 -17.34 -0.09 1.74 16 14 N -0.80 -21.48 10.80 55.55 0.60 -20.88 16 15 Si 0.91 19.22 29.57 -169.99 -5.03 14.19 16 16 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 17 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 19 C -0.08 -2.23 8.19 -38.44 -0.31 -2.55 16 20 C 0.15 2.11 3.51 -67.93 -0.24 1.87 16 21 C -0.18 -2.47 9.12 37.16 0.34 -2.13 16 22 C -0.17 -2.31 9.12 37.16 0.34 -1.98 16 23 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.13 2.59 4.43 -54.68 -0.24 2.35 16 27 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 29 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 30 H 0.14 3.91 5.82 -52.49 -0.31 3.61 16 31 H 0.09 1.03 8.13 -51.92 -0.42 0.61 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.09 1.53 5.97 -51.93 -0.31 1.22 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.33 6.37 -51.93 -0.33 1.00 16 LS Contribution 307.08 15.07 4.63 4.63 Total: -1.00 -29.28 307.08 -6.56 -35.84 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.96 Total: 6.87 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -1.62 Total: -17.18 kcal Atomic # 7 Polarization: -30.09 SS G_CDS: 0.44 Total: -29.65 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.02 Total: -14.69 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.28 -6.56 -35.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331110244.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.097 kcal (2) G-P(sol) polarization free energy of solvation -29.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds