Wall clock time and date at job start Sun Mar 29 2020 23:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34671 * 116.99827 * 89.99759 * 13 3 2 15 15 O 1.21428 * 120.00618 * 359.97438 * 14 13 3 16 16 C 1.48078 * 119.99973 * 180.02562 * 14 13 3 17 17 C 1.39345 * 119.72695 * 179.72351 * 16 14 13 18 18 C 1.38593 * 119.05272 * 179.79054 * 17 16 14 19 19 C 1.50701 * 120.75507 * 180.19910 * 18 17 16 20 20 C 1.38619 * 118.48857 * 0.47502 * 18 17 16 21 21 C 1.50704 * 120.32020 * 179.72382 * 20 18 17 22 22 C 1.38581 * 119.36089 * 359.74994 * 20 18 17 23 23 N 1.31497 * 120.90640 * 0.02562 * 22 20 18 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 30 30 H 1.08001 * 120.47179 * 359.97438 * 17 16 14 31 31 H 1.09001 * 109.47510 * 270.28452 * 19 18 17 32 32 H 1.09003 * 109.46486 * 30.28341 * 19 18 17 33 33 H 1.08993 * 109.46897 * 150.28031 * 19 18 17 34 34 H 1.09004 * 109.47112 * 270.02393 * 21 20 18 35 35 H 1.09001 * 109.46890 * 30.02025 * 21 20 18 36 36 H 1.08999 * 109.47317 * 150.02336 * 21 20 18 37 37 H 1.08004 * 119.54787 * 180.02562 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 8 1.6559 2.0917 -1.2407 14 6 0.4689 2.7275 -1.2559 15 8 -0.2266 2.7391 -0.2606 16 6 0.0112 3.4117 -2.4868 17 6 -1.2206 4.0630 -2.4981 18 6 -1.6333 4.7025 -3.6563 19 6 -2.9562 5.4224 -3.7096 20 6 -0.8042 4.6600 -4.7663 21 6 -1.2149 5.3361 -6.0491 22 6 0.4059 3.9894 -4.6853 23 7 0.7753 3.3947 -3.5722 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8293 -0.0605 2.9503 30 1 -1.8435 4.0718 -1.6158 31 1 -3.7339 4.7300 -4.0319 32 1 -3.2002 5.8076 -2.7196 33 1 -2.8912 6.2501 -4.4157 34 1 -1.7730 4.6332 -6.6677 35 1 -1.8428 6.1973 -5.8209 36 1 -0.3260 5.6666 -6.5864 37 1 1.0544 3.9548 -5.5483 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345888263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:05 Heat of formation + Delta-G solvation = -86.119943 kcal Electronic energy + Delta-G solvation = -19614.376289 eV Core-core repulsion = 16548.561126 eV Total energy + Delta-G solvation = -3065.815164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.90362 -40.77936 -37.70955 -35.79757 -35.37736 -33.55563 -33.29874 -29.74843 -29.24685 -28.18754 -25.50462 -24.35018 -23.82101 -22.22415 -21.21559 -19.16205 -18.70893 -17.78802 -17.49882 -17.15044 -16.52744 -16.17966 -15.62109 -15.50951 -14.89011 -14.76658 -14.20601 -13.90828 -13.70836 -13.68721 -13.52409 -13.37700 -13.33251 -13.15326 -12.83553 -12.70190 -12.59408 -12.44198 -12.16016 -11.83916 -11.68050 -11.43146 -10.87019 -10.57626 -10.56010 -10.52337 -10.00069 -8.29069 -6.46129 -0.53551 0.17676 1.39423 1.43113 1.44490 1.52017 1.85411 2.38675 2.72119 2.99851 3.22642 3.70353 3.76007 3.82942 3.83522 4.19221 4.32307 4.34399 4.46240 4.55477 4.60513 4.72117 4.73421 4.78346 4.91411 4.98284 5.03327 5.14783 5.16851 5.18748 5.31118 5.35308 5.47620 5.62218 5.67373 5.87573 6.05891 6.53090 6.70477 6.99043 7.24715 8.77919 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031078 B = 0.004654 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.737585 B = 6015.373398 C = 6540.554478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.128 4.128 3 C 0.221 3.779 4 H 0.010 0.990 5 C -0.553 4.553 6 H 0.061 0.939 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.983 3.017 10 H -0.270 1.270 11 H -0.272 1.272 12 H -0.265 1.265 13 O -0.345 6.345 14 C 0.502 3.498 15 O -0.532 6.532 16 C 0.060 3.940 17 C -0.109 4.109 18 C -0.056 4.056 19 C -0.114 4.114 20 C -0.100 4.100 21 C -0.112 4.112 22 C 0.088 3.912 23 N -0.473 5.473 24 H 0.029 0.971 25 H 0.040 0.960 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.272 0.728 30 H 0.147 0.853 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 9.889 -16.252 22.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.027 0.973 5 C -0.591 4.591 6 H 0.079 0.921 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.805 3.195 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.190 1.190 13 O -0.260 6.260 14 C 0.347 3.653 15 O -0.423 6.423 16 C -0.074 4.074 17 C -0.130 4.130 18 C -0.063 4.063 19 C -0.170 4.170 20 C -0.102 4.102 21 C -0.168 4.168 22 C -0.073 4.073 23 N -0.184 5.184 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.110 0.890 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.165 0.835 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -11.136 9.302 -15.650 21.341 hybrid contribution 0.294 -0.006 0.880 0.928 sum -10.841 9.296 -14.770 20.545 Atomic orbital electron populations 1.21711 0.96238 1.00771 0.99929 1.21864 0.94536 0.97897 1.02353 1.20503 0.94819 0.89477 0.78424 0.97266 1.21265 0.90387 1.40377 1.07052 0.92112 1.25797 1.04413 0.93649 0.94128 1.69996 1.37555 1.37728 1.09772 0.85245 0.77429 0.78781 0.78018 1.19480 1.19707 1.18969 1.86642 1.34728 1.62231 1.42396 1.21445 0.80134 0.76144 0.87602 1.90733 1.56036 1.59836 1.35650 1.20055 0.94301 1.01652 0.91436 1.22111 0.94429 0.95679 1.00756 1.20616 0.98615 0.95978 0.91140 1.20988 0.90654 1.00587 1.04730 1.21586 0.93873 0.96709 0.97985 1.20980 1.03737 1.00815 0.91284 1.23411 0.95721 0.93104 0.95062 1.67584 1.33942 1.17092 0.99816 0.95197 0.94068 0.91618 0.89042 0.93922 0.91862 0.83505 0.88720 0.90548 0.87899 0.88650 0.88821 0.89314 0.79180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.07 8.56 71.98 0.62 -5.45 16 2 C -0.13 -6.93 5.49 30.59 0.17 -6.76 16 3 C 0.22 13.00 2.25 29.85 0.07 13.06 16 4 H 0.01 0.62 7.16 -2.39 -0.02 0.60 16 5 C -0.55 -33.53 8.90 25.60 0.23 -33.30 16 6 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -53.78 11.29 21.45 0.24 -53.53 16 9 Si 0.98 44.64 29.54 68.60 2.03 46.66 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 13 O -0.34 -19.01 9.62 -55.80 -0.54 -19.54 16 14 C 0.50 24.52 6.40 70.43 0.45 24.97 16 15 O -0.53 -27.14 13.50 20.07 0.27 -26.87 16 16 C 0.06 2.34 6.75 41.89 0.28 2.62 16 17 C -0.11 -3.28 9.34 22.62 0.21 -3.07 16 18 C -0.06 -1.15 5.91 -19.69 -0.12 -1.27 16 19 C -0.11 -1.29 9.67 71.24 0.69 -0.60 16 20 C -0.10 -1.83 5.91 -19.69 -0.12 -1.95 16 21 C -0.11 -0.90 9.65 71.24 0.69 -0.21 16 22 C 0.09 2.18 10.86 84.82 0.92 3.10 16 23 N -0.47 -17.38 10.12 -184.95 -1.87 -19.25 16 24 H 0.03 1.37 6.06 -2.39 -0.01 1.36 16 25 H 0.04 2.00 7.79 -2.39 -0.02 1.99 16 26 H 0.06 2.62 8.14 -2.38 -0.02 2.60 16 27 H 0.09 5.25 5.95 -2.39 -0.01 5.24 16 28 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.15 4.29 7.64 -2.91 -0.02 4.27 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.87 8.10 -2.39 -0.02 0.86 16 33 H 0.10 0.64 6.07 -2.39 -0.01 0.63 16 34 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.09 0.45 6.06 -2.39 -0.01 0.43 16 36 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 37 H 0.19 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -75.60 310.06 5.74 -69.86 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: 1.07 Total: 9.93 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 4.54 Total: -7.26 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -1.63 Total: -72.78 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.27 Total: -46.41 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.66 kcal Total: -75.60 5.74 -69.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345888263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.255 kcal (2) G-P(sol) polarization free energy of solvation -75.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds