Wall clock time and date at job start Sun Mar 29 2020 23:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34674 * 116.99893 * 270.00539 * 13 3 2 15 15 O 1.21433 * 120.00074 * 359.97438 * 14 13 3 16 16 C 1.48043 * 119.99844 * 179.97438 * 14 13 3 17 17 C 1.39852 * 120.92967 * 359.71628 * 16 14 13 18 18 C 1.38150 * 118.99735 * 179.75052 * 17 16 14 19 19 C 1.50706 * 119.55034 * 180.24906 * 18 17 16 20 20 N 1.31807 * 120.90186 * 0.53772 * 18 17 16 21 21 C 1.31816 * 122.06008 * 359.71279 * 20 18 17 22 22 C 1.50690 * 119.55155 * 179.97438 * 21 20 18 23 23 C 1.38149 * 120.89984 * 0.02562 * 21 20 18 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 1.08003 * 120.50553 * 0.02562 * 17 16 14 31 31 H 1.09002 * 109.47335 * 270.27911 * 19 18 17 32 32 H 1.08996 * 109.47006 * 30.28617 * 19 18 17 33 33 H 1.09004 * 109.46850 * 150.28183 * 19 18 17 34 34 H 1.09001 * 109.47762 * 270.02238 * 22 21 20 35 35 H 1.09004 * 109.47303 * 30.02490 * 22 21 20 36 36 H 1.09002 * 109.47534 * 150.02393 * 22 21 20 37 37 H 1.08000 * 120.50656 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 8 1.6560 2.0916 1.2408 14 6 0.4689 2.7275 1.2561 15 8 -0.2262 2.7398 0.2605 16 6 0.0114 3.4114 2.4868 17 6 0.7935 3.4044 3.6461 18 6 0.3302 4.0598 4.7705 19 6 1.1656 4.0650 6.0249 20 7 -0.8350 4.6759 4.7630 21 6 -1.6055 4.7025 3.6938 22 6 -2.9276 5.4234 3.7483 23 6 -1.2179 4.0776 2.5243 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 1.7474 2.8981 3.6609 31 1 0.9073 3.2009 6.6370 32 1 2.2215 4.0191 5.7584 33 1 0.9720 4.9790 6.5865 34 1 -3.7057 4.7318 4.0712 35 1 -2.8614 6.2512 4.4544 36 1 -3.1723 5.8090 2.7585 37 1 -1.8544 4.1030 1.6522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525462836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:07 Heat of formation + Delta-G solvation = -70.567054 kcal Electronic energy + Delta-G solvation = -19645.586289 eV Core-core repulsion = 16580.445549 eV Total energy + Delta-G solvation = -3065.140740 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.57159 -39.27479 -35.91451 -33.87089 -33.56095 -32.75083 -31.35404 -29.16260 -27.45526 -26.72597 -24.62881 -23.04187 -21.91946 -20.60153 -19.47725 -17.40436 -16.94522 -16.18402 -15.87335 -15.42113 -15.32874 -14.69603 -14.60972 -14.08068 -13.35457 -13.19900 -13.10508 -12.88828 -12.54154 -12.30540 -12.20236 -11.91700 -11.70596 -11.51465 -11.37645 -11.23920 -11.01673 -10.70077 -10.33976 -10.06513 -9.82952 -9.74904 -9.49917 -9.42478 -8.87949 -8.80120 -8.50438 -6.23197 -4.30714 0.77509 1.06588 3.04114 3.21762 3.26269 3.29631 3.43975 3.85317 4.09871 4.28176 4.59889 4.97285 5.00950 5.08815 5.15540 5.42754 5.44491 5.46041 5.54227 5.55184 5.64620 5.88517 5.97217 6.07496 6.17522 6.20699 6.26321 6.40657 6.63677 6.80296 6.89501 7.10356 7.14974 7.55271 7.66955 7.85274 7.91610 8.08698 8.50936 8.80404 9.34584 10.83635 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.004997 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.795895 B = 5602.425679 C = 6254.235413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.049 0.951 5 C -0.523 4.523 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.347 6.347 14 C 0.495 3.505 15 O -0.504 6.504 16 C -0.058 4.058 17 C -0.124 4.124 18 C 0.120 3.880 19 C -0.101 4.101 20 N -0.472 5.472 21 C 0.120 3.880 22 C -0.100 4.100 23 C -0.124 4.124 24 H 0.053 0.947 25 H 0.030 0.970 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.110 0.890 29 H 0.267 0.733 30 H 0.152 0.848 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 6.093 11.896 15.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.262 6.262 14 C 0.338 3.662 15 O -0.394 6.394 16 C -0.067 4.067 17 C -0.144 4.144 18 C -0.017 4.017 19 C -0.159 4.159 20 N -0.184 5.184 21 C -0.018 4.018 22 C -0.157 4.157 23 C -0.144 4.144 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.170 0.830 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.716 6.375 12.116 15.715 hybrid contribution 1.167 -0.627 -1.148 1.753 sum -6.549 5.748 10.969 14.008 Atomic orbital electron populations 1.21869 0.98378 0.99148 1.00700 1.22033 0.92639 0.99224 1.03514 1.20769 0.95185 0.88792 0.78295 0.93353 1.21020 0.89466 1.39206 1.06383 0.91254 1.24883 0.99311 0.94677 0.94986 1.69888 1.35447 1.37691 1.09455 0.86269 0.83753 0.78707 0.77401 1.20305 1.20932 1.19605 1.86527 1.33160 1.62121 1.44438 1.20834 0.81352 0.77084 0.86889 1.90777 1.55488 1.58242 1.34872 1.19842 0.95288 0.98331 0.93246 1.22389 1.01356 0.98600 0.92048 1.21255 0.91640 0.93270 0.95577 1.20712 0.98272 1.03480 0.93411 1.67174 1.04754 1.17316 1.29157 1.21168 0.96402 0.95805 0.88399 1.20689 0.91604 1.00062 1.03387 1.22099 0.95719 0.96700 0.99834 0.92746 0.95083 0.94661 0.93860 0.87167 0.92312 0.82993 0.90308 0.90284 0.90488 0.90355 0.90406 0.90499 0.83528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.56 37.16 0.32 -2.83 16 2 C -0.14 -3.35 5.49 -26.74 -0.15 -3.49 16 3 C 0.22 5.82 2.25 -27.89 -0.06 5.76 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.38 8.90 -34.44 -0.31 -14.69 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.70 11.30 55.43 0.63 -24.07 16 9 Si 0.91 20.72 29.54 -169.99 -5.02 15.70 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 O -0.35 -8.14 9.16 -40.42 -0.37 -8.51 16 14 C 0.50 10.54 6.37 34.75 0.22 10.76 16 15 O -0.50 -11.65 13.63 -19.21 -0.26 -11.91 16 16 C -0.06 -1.01 5.91 -104.66 -0.62 -1.62 16 17 C -0.12 -1.89 9.33 -39.01 -0.36 -2.25 16 18 C 0.12 1.62 6.78 -82.63 -0.56 1.06 16 19 C -0.10 -0.99 10.16 36.01 0.37 -0.63 16 20 N -0.47 -6.62 10.16 -5.79 -0.06 -6.68 16 21 C 0.12 1.59 6.78 -82.64 -0.56 1.03 16 22 C -0.10 -0.94 10.16 36.00 0.37 -0.57 16 23 C -0.12 -1.85 9.31 -39.00 -0.36 -2.22 16 24 H 0.05 1.24 7.79 -51.93 -0.40 0.84 16 25 H 0.03 0.66 6.06 -51.93 -0.31 0.34 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.15 2.22 7.71 -52.48 -0.40 1.81 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 37 H 0.15 2.07 7.74 -52.49 -0.41 1.66 16 LS Contribution 313.95 15.07 4.73 4.73 Total: -1.00 -30.20 313.95 -7.29 -37.49 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.13 Total: 1.30 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -1.80 Total: -8.05 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.57 Total: -30.75 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.63 Total: -20.42 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.20 -7.29 -37.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525462836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.074 kcal (2) G-P(sol) polarization free energy of solvation -30.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds