Wall clock time and date at job start Sun Mar 29 2020 23:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47448 * 90.00055 * 9 7 5 11 11 H 1.48502 * 109.46950 * 209.99961 * 9 7 5 12 12 H 1.48502 * 109.46954 * 329.99800 * 9 7 5 13 13 O 1.45208 * 109.47166 * 65.00081 * 3 2 1 14 14 C 1.34674 * 116.99893 * 270.00539 * 13 3 2 15 15 O 1.21433 * 120.00074 * 359.97438 * 14 13 3 16 16 C 1.48043 * 119.99844 * 179.97438 * 14 13 3 17 17 C 1.39852 * 120.92967 * 359.71628 * 16 14 13 18 18 C 1.38150 * 118.99735 * 179.75052 * 17 16 14 19 19 C 1.50706 * 119.55034 * 180.24906 * 18 17 16 20 20 N 1.31807 * 120.90186 * 0.53772 * 18 17 16 21 21 C 1.31816 * 122.06008 * 359.71279 * 20 18 17 22 22 C 1.50690 * 119.55155 * 179.97438 * 21 20 18 23 23 C 1.38149 * 120.89984 * 0.02562 * 21 20 18 24 24 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 25 25 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 26 26 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 28 28 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 29 29 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 30 30 H 1.08003 * 120.50553 * 0.02562 * 17 16 14 31 31 H 1.09002 * 109.47335 * 270.27911 * 19 18 17 32 32 H 1.08996 * 109.47006 * 30.28617 * 19 18 17 33 33 H 1.09004 * 109.46850 * 150.28183 * 19 18 17 34 34 H 1.09001 * 109.47762 * 270.02238 * 22 21 20 35 35 H 1.09004 * 109.47303 * 30.02490 * 22 21 20 36 36 H 1.09002 * 109.47534 * 150.02393 * 22 21 20 37 37 H 1.08000 * 120.50656 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5540 -0.3519 -0.7599 11 1 6.3835 0.9215 -2.8166 12 1 6.5576 2.0720 -0.6890 13 8 1.6560 2.0916 1.2408 14 6 0.4689 2.7275 1.2561 15 8 -0.2262 2.7398 0.2605 16 6 0.0114 3.4114 2.4868 17 6 0.7935 3.4044 3.6461 18 6 0.3302 4.0598 4.7705 19 6 1.1656 4.0650 6.0249 20 7 -0.8350 4.6759 4.7630 21 6 -1.6055 4.7025 3.6938 22 6 -2.9276 5.4234 3.7483 23 6 -1.2179 4.0776 2.5243 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.8292 -0.0604 -2.9503 30 1 1.7474 2.8981 3.6609 31 1 0.9073 3.2009 6.6370 32 1 2.2215 4.0191 5.7584 33 1 0.9720 4.9790 6.5865 34 1 -3.7057 4.7318 4.0712 35 1 -2.8614 6.2512 4.4544 36 1 -3.1723 5.8090 2.7585 37 1 -1.8544 4.1030 1.6522 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525462836.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:55:07 Heat of formation + Delta-G solvation = -87.150801 kcal Electronic energy + Delta-G solvation = -19646.305414 eV Core-core repulsion = 16580.445549 eV Total energy + Delta-G solvation = -3065.859865 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.91673 -40.83857 -37.75983 -35.61064 -34.75174 -34.10243 -33.28030 -30.00821 -29.42818 -27.75580 -26.20904 -24.90201 -22.95780 -22.31860 -21.24756 -19.06136 -18.71259 -17.73583 -17.37134 -17.08080 -16.75833 -16.35594 -15.76939 -15.31324 -14.88892 -14.74447 -14.26658 -14.08443 -14.06069 -13.48908 -13.37159 -13.22919 -13.18213 -12.93218 -12.87136 -12.80474 -12.72411 -12.58519 -12.16955 -11.84949 -11.70936 -11.44077 -11.00829 -10.89163 -10.67571 -10.55238 -9.85880 -8.29734 -6.46931 -0.53346 -0.03196 1.41202 1.43297 1.51404 1.54083 1.78509 2.38281 2.64173 3.00249 3.14891 3.47188 3.72756 3.86928 3.93696 4.32144 4.33787 4.34684 4.41380 4.50424 4.55393 4.74985 4.77601 4.77943 4.83290 4.98862 5.02523 5.05008 5.12927 5.15441 5.23622 5.29829 5.47527 5.60248 5.61684 5.88004 6.03894 6.55225 6.81930 6.83368 7.23873 8.77229 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.004997 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.795895 B = 5602.425679 C = 6254.235413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.009 0.991 5 C -0.551 4.551 6 H 0.067 0.933 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.981 3.019 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.352 6.352 14 C 0.493 3.507 15 O -0.530 6.530 16 C -0.081 4.081 17 C -0.132 4.132 18 C 0.125 3.875 19 C -0.100 4.100 20 N -0.477 5.477 21 C 0.126 3.874 22 C -0.098 4.098 23 C -0.130 4.130 24 H 0.037 0.963 25 H 0.032 0.968 26 H 0.063 0.937 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.271 0.729 30 H 0.153 0.847 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 6.587 13.741 16.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.085 0.915 7 C -0.180 4.180 8 N -0.551 5.551 9 Si 0.804 3.196 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.190 1.190 13 O -0.268 6.268 14 C 0.338 3.662 15 O -0.421 6.421 16 C -0.089 4.089 17 C -0.152 4.152 18 C -0.013 4.013 19 C -0.157 4.157 20 N -0.189 5.189 21 C -0.012 4.012 22 C -0.155 4.155 23 C -0.150 4.150 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.108 0.892 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.688 6.876 13.980 17.373 hybrid contribution 1.070 -0.720 -1.676 2.115 sum -6.618 6.156 12.304 15.267 Atomic orbital electron populations 1.21724 0.96393 1.00746 0.99951 1.21884 0.94374 0.97945 1.02595 1.20491 0.94813 0.89323 0.78155 0.97327 1.21304 0.90208 1.40247 1.07099 0.91454 1.25789 1.04247 0.93759 0.94248 1.70008 1.37489 1.37784 1.09845 0.85203 0.77609 0.79145 0.77597 1.19118 1.20324 1.19047 1.86507 1.34665 1.62674 1.42961 1.21550 0.80208 0.76370 0.88099 1.90750 1.55869 1.59211 1.36269 1.19729 0.97031 1.00020 0.92157 1.22475 1.01357 0.99320 0.92080 1.21800 0.91652 0.91673 0.96130 1.20837 0.98295 1.04710 0.91845 1.67357 1.04958 1.17339 1.29236 1.21768 0.97500 0.94647 0.87291 1.20825 0.89629 1.00313 1.04775 1.22242 0.94971 0.96866 1.00917 0.94360 0.94901 0.91772 0.93388 0.89220 0.91948 0.82926 0.88717 0.89060 0.89370 0.88708 0.89338 0.89007 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.56 71.98 0.62 -5.18 16 2 C -0.13 -6.55 5.49 30.59 0.17 -6.39 16 3 C 0.23 12.29 2.25 29.85 0.07 12.36 16 4 H 0.01 0.55 7.16 -2.39 -0.02 0.53 16 5 C -0.55 -31.07 8.90 25.60 0.23 -30.84 16 6 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -51.83 11.30 21.45 0.24 -51.59 16 9 Si 0.98 42.42 29.54 68.60 2.03 44.45 16 10 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 11 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 13 O -0.35 -17.13 9.16 -55.83 -0.51 -17.64 16 14 C 0.49 21.70 6.37 70.42 0.45 22.15 16 15 O -0.53 -25.55 13.63 20.05 0.27 -25.27 16 16 C -0.08 -2.82 5.91 -19.89 -0.12 -2.93 16 17 C -0.13 -3.97 9.33 22.64 0.21 -3.76 16 18 C 0.13 3.15 6.78 42.54 0.29 3.44 16 19 C -0.10 -1.69 10.16 71.24 0.72 -0.96 16 20 N -0.48 -12.34 10.16 -172.23 -1.75 -14.08 16 21 C 0.13 3.11 6.78 42.54 0.29 3.39 16 22 C -0.10 -1.57 10.16 71.23 0.72 -0.84 16 23 C -0.13 -3.83 9.31 22.64 0.21 -3.62 16 24 H 0.04 1.79 7.79 -2.39 -0.02 1.77 16 25 H 0.03 1.41 6.06 -2.39 -0.01 1.39 16 26 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 27 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 4.91 5.95 -2.39 -0.01 4.90 16 29 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.15 4.45 7.71 -2.91 -0.02 4.43 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 36 H 0.09 1.21 8.08 -2.39 -0.02 1.19 16 37 H 0.15 4.22 7.74 -2.91 -0.02 4.19 16 Total: -1.00 -66.38 313.95 5.65 -60.73 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 1.06 Total: 15.09 kcal Atomic # 6 Polarization: -15.98 SS G_CDS: 4.31 Total: -11.68 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -1.51 Total: -65.67 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.24 Total: -42.92 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -66.38 5.65 -60.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525462836.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.421 kcal (2) G-P(sol) polarization free energy of solvation -66.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds