Wall clock time and date at job start Mon Mar 30 2020 00:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08996 * 109.47516 * 2 1 4 4 C 1.50703 * 109.46888 * 240.00562 * 2 1 3 5 5 C 1.38232 * 120.00091 * 94.55593 * 4 2 1 6 6 C 1.38246 * 119.99970 * 179.97438 * 5 4 2 7 7 C 1.38234 * 119.99722 * 359.97438 * 6 5 4 8 8 C 1.38230 * 120.00216 * 0.03106 * 7 6 5 9 9 C 1.38239 * 119.99716 * 274.53486 * 4 2 1 10 10 N 1.46498 * 109.47592 * 120.00823 * 2 1 3 11 11 C 1.46501 * 119.99464 * 2.40314 * 10 2 1 12 12 C 1.53002 * 109.47072 * 88.11571 * 11 10 2 13 13 O 1.42901 * 109.46904 * 64.34725 * 12 11 10 14 14 C 1.34769 * 120.00249 * 182.40664 * 10 2 1 15 15 O 1.21688 * 120.00158 * 359.97438 * 14 10 2 16 16 C 1.46379 * 119.99842 * 179.97438 * 14 10 2 17 17 H 1.08002 * 120.00240 * 0.02562 * 16 14 10 18 18 C 1.40049 * 119.99759 * 179.97438 * 16 14 10 19 19 N 1.30668 * 120.00580 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99756 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47344 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47098 * 120.00254 * 20 18 16 23 23 H 1.48504 * 109.46790 * 239.99949 * 20 18 16 24 24 H 1.09000 * 109.47321 * 299.99888 * 1 2 3 25 25 H 1.08998 * 109.47520 * 59.99614 * 1 2 3 26 26 H 1.09003 * 109.47725 * 179.97438 * 1 2 3 27 27 H 1.07993 * 120.00197 * 359.97438 * 5 4 2 28 28 H 1.07994 * 119.99479 * 179.70202 * 6 5 4 29 29 H 1.08004 * 119.99561 * 179.97438 * 7 6 5 30 30 H 1.08007 * 120.00053 * 180.02562 * 8 7 6 31 31 H 1.07997 * 120.00467 * 359.97438 * 9 4 2 32 32 H 1.09002 * 109.47073 * 208.11340 * 11 10 2 33 33 H 1.09003 * 109.47471 * 328.11273 * 11 10 2 34 34 H 1.09004 * 109.47038 * 184.34152 * 12 11 10 35 35 H 1.08993 * 109.47177 * 304.34670 * 12 11 10 36 36 H 0.96701 * 113.99599 * 180.02562 * 13 12 11 37 37 H 0.96992 * 120.00841 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 6 2.3522 0.0133 -2.3641 6 6 2.8135 -0.6383 -3.4927 7 6 2.9552 -2.0133 -3.4875 8 6 2.6351 -2.7369 -2.3541 9 6 2.1733 -2.0855 -1.2256 10 7 2.0184 -0.6907 1.1960 11 6 1.0674 -1.2935 2.1333 12 6 0.7573 -2.7261 1.6946 13 8 1.9443 -3.5174 1.7785 14 6 3.3424 -0.7716 1.4340 15 8 4.1323 -0.2713 0.6552 16 6 3.8303 -1.4613 2.6294 17 1 3.1293 -1.9058 3.3204 18 6 5.2063 -1.5458 2.8764 19 7 6.0545 -1.0086 2.0402 20 14 5.8290 -2.4267 4.4015 21 1 4.6751 -2.9431 5.1807 22 1 6.7009 -3.5589 3.9979 23 1 6.6059 -1.4775 5.2387 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3635 -1.0277 -0.0005 27 1 2.2419 1.0875 -2.3680 28 1 3.0589 -0.0734 -4.3798 29 1 3.3152 -2.5224 -4.3695 30 1 2.7462 -3.8112 -2.3499 31 1 1.9240 -2.6508 -0.3398 32 1 1.5010 -1.3056 3.1333 33 1 0.1472 -0.7094 2.1434 34 1 -0.0076 -3.1482 2.3464 35 1 0.3960 -2.7210 0.6663 36 1 1.8217 -4.4395 1.5142 37 1 7.0074 -1.0668 2.2115 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546241079.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:15 Heat of formation + Delta-G solvation = -72.258779 kcal Electronic energy + Delta-G solvation = -20934.013935 eV Core-core repulsion = 17868.799837 eV Total energy + Delta-G solvation = -3065.214098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85571 -39.07018 -37.54719 -36.18758 -34.43077 -33.10884 -31.62643 -30.14261 -29.61727 -28.04267 -24.59736 -23.55688 -23.14435 -22.36298 -20.26279 -18.41632 -18.24510 -17.88634 -17.39977 -16.52971 -16.30442 -15.97491 -15.40914 -15.27842 -14.77710 -14.41766 -14.16597 -14.03594 -13.94849 -13.52722 -13.28430 -13.05676 -12.85093 -12.73515 -12.55974 -12.34232 -12.24472 -11.93701 -11.86284 -11.75559 -11.54571 -10.82769 -10.59284 -9.71722 -9.67267 -9.33619 -8.95329 -8.13235 -6.58883 0.59568 0.64847 1.39443 1.39957 1.56638 2.29694 2.61035 2.83280 3.08534 3.67127 3.77724 4.03253 4.11180 4.18405 4.28660 4.35185 4.41377 4.43426 4.56534 4.68359 4.71705 4.74268 4.87495 4.91190 5.03936 5.12950 5.23905 5.27437 5.34043 5.53273 5.65891 5.71624 5.87488 5.96669 6.27161 6.36407 6.59575 7.06392 7.19103 7.61898 8.67205 8.87497 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019730 B = 0.008102 C = 0.007154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.847048 B = 3455.230815 C = 3912.777456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.182 3.818 3 H 0.039 0.961 4 C -0.080 4.080 5 C -0.135 4.135 6 C -0.130 4.130 7 C -0.138 4.138 8 C -0.139 4.139 9 C -0.124 4.124 10 N -0.630 5.630 11 C 0.109 3.891 12 C 0.057 3.943 13 O -0.569 6.569 14 C 0.555 3.445 15 O -0.625 6.625 16 C -0.530 4.530 17 H 0.086 0.914 18 C 0.026 3.974 19 N -0.830 5.830 20 Si 0.985 3.015 21 H -0.249 1.249 22 H -0.276 1.276 23 H -0.274 1.274 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.121 0.879 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.376 0.624 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 -4.056 -3.946 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.078 3.922 3 H 0.057 0.943 4 C -0.081 4.081 5 C -0.153 4.153 6 C -0.148 4.148 7 C -0.156 4.156 8 C -0.157 4.157 9 C -0.142 4.142 10 N -0.366 5.366 11 C -0.014 4.014 12 C -0.021 4.021 13 O -0.374 6.374 14 C 0.360 3.640 15 O -0.512 6.512 16 C -0.567 4.567 17 H 0.104 0.896 18 C -0.187 4.187 19 N -0.461 5.461 20 Si 0.807 3.193 21 H -0.172 1.172 22 H -0.201 1.201 23 H -0.199 1.199 24 H 0.098 0.902 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.139 0.861 28 H 0.160 0.840 29 H 0.161 0.839 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.223 0.777 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.821 -3.158 -4.189 13.853 hybrid contribution 0.639 -0.724 0.374 1.036 sum -12.182 -3.882 -3.815 13.342 Atomic orbital electron populations 1.22044 0.90699 1.03362 1.03534 1.19674 0.95608 0.93567 0.83327 0.94309 1.20389 0.98078 0.94414 0.95236 1.21158 1.00548 0.99863 0.93745 1.21336 0.99799 0.95075 0.98559 1.21361 1.00911 0.94505 0.98826 1.21378 1.00039 1.00519 0.93785 1.21429 0.99413 0.94843 0.98515 1.47926 1.06088 1.59179 1.23407 1.21690 0.93848 0.92244 0.93635 1.22833 0.87332 0.92293 0.99680 1.86945 1.34771 1.25192 1.90526 1.18394 0.79964 0.79315 0.86278 1.90563 1.55795 1.53343 1.51457 1.21333 0.92147 1.35712 1.07514 0.89635 1.26853 0.97254 0.94561 1.00047 1.70237 1.02616 1.37294 1.35973 0.85154 0.78689 0.77913 0.77594 1.17183 1.20141 1.19909 0.90168 0.90261 0.91081 0.86052 0.83985 0.83935 0.85243 0.85398 0.91362 0.87407 0.90905 0.93660 0.77728 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 7.92 71.98 0.57 -3.10 16 2 C 0.18 7.17 2.87 44.24 0.13 7.30 16 3 H 0.04 1.71 8.05 -2.39 -0.02 1.69 16 4 C -0.08 -3.27 3.84 -19.86 -0.08 -3.34 16 5 C -0.13 -5.08 9.68 22.27 0.22 -4.86 16 6 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 7 C -0.14 -4.51 10.05 22.27 0.22 -4.28 16 8 C -0.14 -5.03 10.05 22.27 0.22 -4.81 16 9 C -0.12 -5.05 8.86 22.27 0.20 -4.85 16 10 N -0.63 -28.02 1.88 -807.07 -1.52 -29.54 16 11 C 0.11 3.74 5.05 86.38 0.44 4.18 16 12 C 0.06 1.66 6.28 71.98 0.45 2.11 16 13 O -0.57 -20.31 10.61 -148.98 -1.58 -21.89 16 14 C 0.55 32.29 6.69 86.36 0.58 32.86 16 15 O -0.63 -42.53 14.24 -4.31 -0.06 -42.59 16 16 C -0.53 -30.56 7.63 24.83 0.19 -30.37 16 17 H 0.09 4.57 5.50 -2.91 -0.02 4.55 16 18 C 0.03 1.50 5.50 85.31 0.47 1.96 16 19 N -0.83 -53.05 11.83 21.84 0.26 -52.79 16 20 Si 0.99 43.65 29.56 68.60 2.03 45.68 16 21 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H 0.08 1.81 6.98 -2.39 -0.02 1.79 16 25 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 1.72 6.20 -2.39 -0.01 1.70 16 27 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 28 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 29 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 31 H 0.13 5.20 3.68 -2.91 -0.01 5.19 16 32 H 0.07 2.62 5.99 -2.39 -0.01 2.61 16 33 H 0.11 2.79 5.82 -2.39 -0.01 2.78 16 34 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.05 1.25 5.38 -2.39 -0.01 1.23 16 36 H 0.38 9.60 9.12 -74.06 -0.68 8.93 16 37 H 0.27 15.58 8.29 -92.71 -0.77 14.81 16 Total: -1.00 -83.52 297.42 3.38 -80.14 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.43 Total: 32.28 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 3.83 Total: -11.29 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -1.26 Total: -82.33 kcal Atomic # 8 Polarization: -62.84 SS G_CDS: -1.64 Total: -64.48 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -83.52 3.38 -80.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546241079.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.878 kcal (2) G-P(sol) polarization free energy of solvation -83.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds