Wall clock time and date at job start Mon Mar 30 2020 00:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46863 * 2 1 4 4 C 1.52999 * 109.46921 * 119.99679 * 2 1 3 5 5 C 1.50702 * 109.47522 * 295.00468 * 4 2 1 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 C 1.52999 * 109.47239 * 239.99874 * 2 1 3 14 14 N 1.46497 * 109.47479 * 65.00221 * 13 2 1 15 15 C 1.39701 * 120.00406 * 180.02562 * 14 13 2 16 16 C 1.39028 * 120.00077 * 359.71812 * 15 14 13 17 17 C 1.38210 * 120.23024 * 179.76834 * 16 15 14 18 18 C 1.38004 * 120.23512 * 0.51468 * 17 16 15 19 19 C 1.39635 * 119.99966 * 359.74153 * 18 17 16 20 20 C 1.47737 * 120.11498 * 180.02562 * 19 18 17 21 21 O 1.21477 * 119.99912 * 179.97438 * 20 19 18 22 22 O 1.34710 * 120.00633 * 359.97438 * 20 19 18 23 23 C 1.38632 * 120.00346 * 179.97438 * 15 14 13 24 24 H 1.09007 * 109.47198 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47667 * 300.00120 * 1 2 3 26 26 H 1.09008 * 109.47037 * 60.00507 * 1 2 3 27 27 H 1.09000 * 109.47527 * 175.00066 * 4 2 1 28 28 H 1.09001 * 109.47054 * 55.00157 * 4 2 1 29 29 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 30 30 H 1.09004 * 109.46992 * 185.00306 * 13 2 1 31 31 H 1.08999 * 109.47129 * 304.99562 * 13 2 1 32 32 H 0.97005 * 119.99255 * 359.97438 * 14 13 2 33 33 H 1.08003 * 119.88657 * 0.02562 * 16 15 14 34 34 H 1.08010 * 119.88672 * 180.23391 * 17 16 15 35 35 H 1.08001 * 120.00225 * 179.76668 * 18 17 16 36 36 H 0.96695 * 117.00521 * 180.02562 * 22 20 19 37 37 H 1.08002 * 120.11232 * 359.95044 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0571 2.4767 6 1 1.0804 0.9746 2.3756 7 6 1.9930 -0.4017 3.7283 8 7 1.6498 0.2804 4.7991 9 14 2.9635 -1.9882 3.9029 10 1 2.0242 -3.1318 4.0269 11 1 3.8201 -2.1789 2.7051 12 1 3.8174 -1.9153 5.1156 13 6 2.0400 -0.7213 -1.2492 14 7 1.6525 0.0353 -2.4424 15 6 2.0082 -0.4301 -3.7107 16 6 2.7350 -1.6082 -3.8403 17 6 3.0853 -2.0755 -5.0929 18 6 2.7253 -1.3704 -6.2234 19 6 1.9999 -0.1833 -6.1042 20 6 1.6126 0.5733 -7.3127 21 8 0.9812 1.6056 -7.2066 22 8 1.9598 0.1184 -8.5322 23 6 1.6411 0.2855 -4.8398 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 3.1262 -0.7995 1.2057 28 1 1.6053 -1.7197 1.2952 29 1 1.9007 -0.0402 5.6795 30 1 3.1263 -0.7995 -1.2055 31 1 1.6054 -1.7198 -1.2951 32 1 1.1483 0.8590 -2.3517 33 1 3.0233 -2.1624 -2.9592 34 1 3.6467 -2.9934 -5.1874 35 1 3.0042 -1.7371 -7.2002 36 1 1.6843 0.6478 -9.2931 37 1 1.0794 1.2027 -4.7412 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574013263.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:48 Heat of formation + Delta-G solvation = -81.196717 kcal Electronic energy + Delta-G solvation = -18716.129601 eV Core-core repulsion = 15650.527925 eV Total energy + Delta-G solvation = -3065.601676 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56147 -39.16420 -36.81495 -36.28874 -34.15462 -32.18009 -31.34266 -29.43266 -27.44487 -25.98166 -24.74571 -22.63314 -22.24329 -20.78575 -19.40125 -18.30198 -17.71969 -16.95601 -16.12444 -15.81402 -15.70138 -15.49287 -14.79376 -14.30074 -13.91780 -13.68044 -13.47955 -13.36625 -13.06102 -12.41297 -12.33017 -11.92431 -11.78218 -11.72537 -11.43236 -11.14074 -10.96956 -10.78059 -10.61010 -10.21948 -9.90716 -9.82254 -9.67461 -9.18352 -9.16807 -8.59150 -7.43280 -6.09174 -4.07543 0.60592 1.44792 2.45322 2.76142 3.26426 3.34621 3.36478 3.56809 3.76810 4.40114 4.71868 4.84033 5.06148 5.16088 5.23364 5.27209 5.38330 5.48567 5.58128 5.71658 5.76322 6.00379 6.12599 6.15443 6.19920 6.25829 6.28655 6.35739 6.56689 6.67667 6.76845 6.94872 7.14004 7.29277 7.35245 7.67057 7.72323 7.77699 8.47652 8.95072 9.52762 11.04045 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.041419 B = 0.003343 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.851049 B = 8373.366183 C = 8917.515896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.069 0.931 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.074 0.926 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.266 1.266 12 H -0.288 1.288 13 C 0.122 3.878 14 N -0.738 5.738 15 C 0.215 3.785 16 C -0.164 4.164 17 C -0.084 4.084 18 C -0.131 4.131 19 C -0.084 4.084 20 C 0.528 3.472 21 O -0.516 6.516 22 O -0.512 6.512 23 C -0.138 4.138 24 H 0.046 0.954 25 H 0.069 0.931 26 H 0.033 0.967 27 H 0.017 0.983 28 H 0.014 0.986 29 H 0.263 0.737 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.402 0.598 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.131 0.869 36 H 0.412 0.588 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 -4.138 -22.997 23.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.044 4.044 5 C -0.555 4.555 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.190 1.190 12 H -0.214 1.214 13 C -0.001 4.001 14 N -0.365 5.365 15 C 0.109 3.891 16 C -0.187 4.187 17 C -0.103 4.103 18 C -0.152 4.152 19 C -0.086 4.086 20 C 0.373 3.627 21 O -0.405 6.405 22 O -0.324 6.324 23 C -0.162 4.162 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.237 0.763 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.270 0.730 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.077 -4.207 -22.230 22.719 hybrid contribution 0.110 -0.141 -0.149 0.232 sum 2.187 -4.348 -22.379 22.902 Atomic orbital electron populations 1.21743 0.95390 1.01221 1.00834 1.21250 0.96066 0.99982 0.93358 0.91247 1.19565 0.96060 0.95864 0.92864 1.21078 1.35774 1.09663 0.89033 0.90816 1.25025 0.95561 0.97001 0.95914 1.69908 1.46923 1.39226 0.98109 0.86798 0.80621 0.84199 0.77767 1.20316 1.19017 1.21409 1.21698 0.99128 0.95260 0.84049 1.44999 1.61063 1.28179 1.02271 1.17712 0.93105 0.92677 0.85591 1.21008 1.02410 0.96771 0.98537 1.20879 0.98556 0.99312 0.91552 1.21103 1.00068 0.94684 0.99300 1.18644 1.03502 0.96718 0.89736 1.21041 0.75535 0.82700 0.83468 1.90887 1.37884 1.24345 1.87398 1.84569 1.74869 1.56192 1.16745 1.20612 1.04281 1.01548 0.89715 0.93483 0.91172 0.94789 0.96453 0.96783 0.92702 0.92376 0.92413 0.76290 0.85266 0.85392 0.85135 0.72977 0.84863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.88 37.16 0.33 -1.97 16 2 C -0.09 -1.56 2.37 -90.62 -0.22 -1.78 16 3 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.01 -0.13 3.52 -27.88 -0.10 -0.22 16 5 C -0.52 -14.03 8.96 -34.44 -0.31 -14.34 16 6 H 0.07 2.15 7.30 -52.49 -0.38 1.77 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.50 16 9 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.12 1.79 4.30 -4.04 -0.02 1.77 16 14 N -0.74 -9.66 5.46 -58.67 -0.32 -9.98 16 15 C 0.21 2.72 6.65 -83.83 -0.56 2.16 16 16 C -0.16 -1.90 9.31 -39.30 -0.37 -2.26 16 17 C -0.08 -0.84 10.02 -39.68 -0.40 -1.23 16 18 C -0.13 -1.33 9.61 -39.15 -0.38 -1.71 16 19 C -0.08 -0.99 5.87 -105.01 -0.62 -1.61 16 20 C 0.53 6.04 8.27 34.61 0.29 6.33 16 21 O -0.52 -7.33 17.13 -19.25 -0.33 -7.66 16 22 O -0.51 -4.08 12.68 -40.52 -0.51 -4.59 16 23 C -0.14 -1.73 9.44 -38.95 -0.37 -2.10 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.07 1.37 6.95 -51.93 -0.36 1.00 16 26 H 0.03 0.49 7.18 -51.92 -0.37 0.12 16 27 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 28 H 0.01 0.31 7.57 -51.93 -0.39 -0.09 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 30 H 0.06 0.84 7.94 -51.93 -0.41 0.43 16 31 H 0.06 0.82 7.95 -51.93 -0.41 0.41 16 32 H 0.40 4.99 7.66 -40.82 -0.31 4.68 16 33 H 0.13 1.42 6.71 -52.48 -0.35 1.07 16 34 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.13 1.10 7.60 -52.49 -0.40 0.70 16 36 H 0.41 1.39 9.11 45.56 0.42 1.80 16 37 H 0.13 1.66 7.65 -52.49 -0.40 1.26 16 LS Contribution 313.59 15.07 4.73 4.73 Total: -1.00 -31.78 313.59 -7.33 -39.11 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -4.19 Total: 3.68 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -2.80 Total: -15.19 kcal Atomic # 7 Polarization: -36.94 SS G_CDS: 0.45 Total: -36.49 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -0.84 Total: -12.25 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.78 -7.33 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574013263.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.082 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds