Wall clock time and date at job start Mon Mar 30 2020 00:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46662 * 2 1 4 4 C 1.50694 * 109.47135 * 240.00588 * 2 1 3 5 5 O 1.20831 * 119.99643 * 323.41640 * 4 2 1 6 6 O 1.34228 * 120.00504 * 143.69779 * 4 2 1 7 7 C 1.52992 * 109.47276 * 120.00236 * 2 1 3 8 8 H 1.08999 * 109.47541 * 64.11108 * 7 2 1 9 9 N 1.46904 * 109.47230 * 184.11485 * 7 2 1 10 10 C 1.46898 * 111.00005 * 206.22436 * 9 7 2 11 11 C 1.50705 * 109.46971 * 178.42358 * 10 9 7 12 12 H 1.07997 * 119.99908 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99969 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00206 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46933 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47260 * 120.00043 * 15 13 11 18 18 H 1.48505 * 109.47398 * 240.00175 * 15 13 11 19 19 C 1.50704 * 109.47511 * 304.11194 * 7 2 1 20 20 C 1.38239 * 120.00172 * 279.73379 * 19 7 2 21 21 C 1.38229 * 119.99972 * 179.80588 * 20 19 7 22 22 C 1.38238 * 120.00015 * 0.39289 * 21 20 19 23 23 C 1.38230 * 120.00111 * 359.85869 * 22 21 20 24 24 C 1.38239 * 119.99672 * 99.99706 * 19 7 2 25 25 H 1.09001 * 109.46662 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47123 * 299.99366 * 1 2 3 27 27 H 1.08998 * 109.47474 * 59.99445 * 1 2 3 28 28 H 0.96698 * 117.00456 * 179.72755 * 6 4 2 29 29 H 1.00894 * 110.99672 * 330.17944 * 9 7 2 30 30 H 1.08991 * 109.47428 * 298.42946 * 10 9 7 31 31 H 1.09009 * 109.47010 * 58.43111 * 10 9 7 32 32 H 0.97003 * 120.00041 * 179.97438 * 14 13 11 33 33 H 1.08000 * 119.99464 * 359.97438 * 20 19 7 34 34 H 1.07996 * 120.00196 * 180.22734 * 21 20 19 35 35 H 1.07999 * 119.99873 * 179.83323 * 22 21 20 36 36 H 1.07997 * 120.00275 * 179.97438 * 23 22 21 37 37 H 1.07994 * 120.00162 * 359.97438 * 24 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 1.4415 -1.6752 -1.6546 6 8 3.1393 -0.2745 -1.8522 7 6 2.0401 -0.7213 1.2491 8 1 1.7382 -1.7680 1.2131 9 7 3.5057 -0.6358 1.2999 10 6 4.0730 -1.7618 2.0536 11 6 5.5767 -1.6613 2.0512 12 1 6.0623 -0.8426 1.5411 13 6 6.3324 -2.6146 2.7001 14 7 5.7410 -3.6119 3.3209 15 14 8.1961 -2.4896 2.6977 16 1 8.6105 -1.2849 1.9345 17 1 8.6870 -2.3839 4.0953 18 1 8.7727 -3.7010 2.0608 19 6 1.4563 -0.0722 2.4776 20 6 2.0103 1.0934 2.9730 21 6 1.4724 1.6909 4.0974 22 6 0.3855 1.1184 4.7313 23 6 -0.1653 -0.0500 4.2391 24 6 0.3702 -0.6455 3.1123 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 3.4250 -0.7648 -2.6351 29 1 3.8974 -0.5883 0.3713 30 1 3.7085 -1.7322 3.0803 31 1 3.7708 -2.6999 1.5877 32 1 6.2726 -4.2828 3.7771 33 1 2.8617 1.5387 2.4798 34 1 1.9029 2.6035 4.4823 35 1 -0.0331 1.5837 5.6114 36 1 -1.0142 -0.4975 4.7345 37 1 -0.0602 -1.5582 2.7275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589469735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:10 Heat of formation + Delta-G solvation = -76.752259 kcal Electronic energy + Delta-G solvation = -19959.801703 eV Core-core repulsion = 16894.392753 eV Total energy + Delta-G solvation = -3065.408950 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.46415 -39.02224 -36.30887 -35.89321 -33.43693 -31.78231 -30.54016 -30.31883 -27.14171 -25.03159 -24.11418 -22.29002 -21.70799 -20.89319 -19.59198 -18.12269 -16.79674 -16.61544 -16.27476 -15.63959 -14.96825 -14.70657 -14.56045 -14.06634 -13.54154 -13.38131 -13.05376 -12.88161 -12.77032 -12.41252 -12.04371 -11.97819 -11.65236 -11.41797 -11.39102 -11.07437 -10.80918 -10.78008 -10.61318 -10.49707 -10.23421 -9.94969 -9.18807 -8.54297 -8.52324 -8.33212 -7.47647 -6.04407 -4.06745 1.66660 1.78919 2.32284 3.14783 3.30056 3.37327 3.42041 4.13373 4.39701 4.68028 4.94932 5.09338 5.22708 5.27091 5.31763 5.32128 5.47898 5.54282 5.58762 5.75152 5.80273 5.89936 5.98383 6.09477 6.18144 6.30944 6.44821 6.61838 6.78472 6.86813 7.02683 7.23174 7.35227 7.38764 7.73942 8.01063 8.08171 8.28964 8.52222 9.02038 9.58049 11.06691 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.007178 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.540538 B = 3899.842484 C = 5293.366520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 H 0.110 0.890 4 C 0.483 3.517 5 O -0.517 6.517 6 O -0.510 6.510 7 C 0.132 3.868 8 H 0.054 0.946 9 N -0.682 5.682 10 C 0.196 3.804 11 C -0.514 4.514 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.896 5.896 15 Si 0.898 3.102 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C -0.058 4.058 20 C -0.078 4.078 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.128 4.128 24 C -0.114 4.114 25 H 0.069 0.931 26 H 0.077 0.923 27 H 0.058 0.942 28 H 0.408 0.592 29 H 0.335 0.665 30 H 0.032 0.968 31 H -0.014 1.014 32 H 0.261 0.739 33 H 0.132 0.868 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.092 9.519 -4.050 15.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 H 0.128 0.872 4 C 0.325 3.675 5 O -0.405 6.405 6 O -0.321 6.321 7 C 0.021 3.979 8 H 0.072 0.928 9 N -0.315 5.315 10 C 0.070 3.930 11 C -0.553 4.553 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.535 5.535 15 Si 0.726 3.274 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.059 4.059 20 C -0.096 4.096 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.146 4.146 24 C -0.133 4.133 25 H 0.088 0.912 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.266 0.734 29 H 0.154 0.846 30 H 0.050 0.950 31 H 0.004 0.996 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.315 9.725 -3.184 15.256 hybrid contribution 1.184 -1.264 -0.955 1.978 sum -10.131 8.461 -4.139 13.833 Atomic orbital electron populations 1.21770 0.91554 1.03566 1.02712 1.21241 0.97732 1.01656 0.89408 0.87224 1.23564 0.77324 0.82153 0.84435 1.90691 1.57445 1.26806 1.65529 1.84599 1.43166 1.59587 1.44751 1.20342 0.91509 0.96835 0.89199 0.92774 1.60779 1.00379 1.49222 1.21105 1.19606 0.94686 0.85176 0.93540 1.21182 0.90841 1.09572 1.33707 0.91827 1.24988 0.98956 0.95227 0.95368 1.69980 1.35461 1.13133 1.34907 0.86435 0.85244 0.77917 0.77774 1.19612 1.20977 1.21120 1.19655 0.94723 0.95271 0.96276 1.21081 0.98323 0.94755 0.95465 1.21147 0.96765 1.00281 0.96504 1.21053 0.97206 0.96459 0.99806 1.20981 1.00477 0.96361 0.96823 1.21032 0.96564 0.99654 0.96044 0.91241 0.90378 0.92321 0.73368 0.84567 0.95040 0.99635 0.92949 0.84965 0.86521 0.86818 0.86645 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.35 37.16 0.31 -1.38 16 2 C -0.08 -1.15 2.52 -91.78 -0.23 -1.38 16 3 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 4 C 0.48 7.40 6.54 36.00 0.24 7.64 16 5 O -0.52 -9.21 17.07 -18.75 -0.32 -9.53 16 6 O -0.51 -6.67 12.50 -39.25 -0.49 -7.16 16 7 C 0.13 2.31 1.83 -68.86 -0.13 2.19 16 8 H 0.05 1.06 7.62 -51.93 -0.40 0.66 16 9 N -0.68 -14.22 5.54 -109.22 -0.61 -14.82 16 10 C 0.20 5.14 5.25 -4.97 -0.03 5.12 16 11 C -0.51 -14.52 9.30 -34.44 -0.32 -14.84 16 12 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 15 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 16 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.06 -0.96 3.73 -104.62 -0.39 -1.35 16 20 C -0.08 -1.25 9.33 -39.58 -0.37 -1.62 16 21 C -0.13 -1.82 10.05 -39.58 -0.40 -2.22 16 22 C -0.13 -1.68 10.05 -39.58 -0.40 -2.07 16 23 C -0.13 -1.74 10.05 -39.58 -0.40 -2.13 16 24 C -0.11 -1.73 8.70 -39.58 -0.34 -2.07 16 25 H 0.07 0.90 7.86 -51.93 -0.41 0.49 16 26 H 0.08 0.90 6.58 -51.93 -0.34 0.55 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.41 3.63 9.10 45.56 0.41 4.04 16 29 H 0.34 6.81 6.60 -39.29 -0.26 6.55 16 30 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 31 H -0.01 -0.40 8.02 -51.92 -0.42 -0.82 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.13 2.17 7.71 -52.49 -0.40 1.76 16 34 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 37 H 0.12 1.63 8.04 -52.49 -0.42 1.21 16 LS Contribution 316.55 15.07 4.77 4.77 Total: -1.00 -32.73 316.55 -7.79 -40.52 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -4.31 Total: 8.34 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -2.55 Total: -12.62 kcal Atomic # 7 Polarization: -41.17 SS G_CDS: 0.13 Total: -41.04 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.81 Total: -16.69 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.73 -7.79 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589469735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.234 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds