Wall clock time and date at job start Mon Mar 30 2020 00:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.46662 * 2 1 4 4 C 1.50694 * 109.47135 * 240.00588 * 2 1 3 5 5 O 1.20831 * 119.99643 * 323.41640 * 4 2 1 6 6 O 1.34228 * 120.00504 * 143.69779 * 4 2 1 7 7 C 1.52992 * 109.47276 * 120.00236 * 2 1 3 8 8 H 1.08999 * 109.47541 * 64.11108 * 7 2 1 9 9 N 1.46904 * 109.47230 * 184.11485 * 7 2 1 10 10 C 1.46898 * 111.00005 * 206.22436 * 9 7 2 11 11 C 1.50705 * 109.46971 * 178.42358 * 10 9 7 12 12 H 1.07997 * 119.99908 * 0.02562 * 11 10 9 13 13 C 1.37874 * 119.99969 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00206 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46933 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47260 * 120.00043 * 15 13 11 18 18 H 1.48505 * 109.47398 * 240.00175 * 15 13 11 19 19 C 1.50704 * 109.47511 * 304.11194 * 7 2 1 20 20 C 1.38239 * 120.00172 * 279.73379 * 19 7 2 21 21 C 1.38229 * 119.99972 * 179.80588 * 20 19 7 22 22 C 1.38238 * 120.00015 * 0.39289 * 21 20 19 23 23 C 1.38230 * 120.00111 * 359.85869 * 22 21 20 24 24 C 1.38239 * 119.99672 * 99.99706 * 19 7 2 25 25 H 1.09001 * 109.46662 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47123 * 299.99366 * 1 2 3 27 27 H 1.08998 * 109.47474 * 59.99445 * 1 2 3 28 28 H 0.96698 * 117.00456 * 179.72755 * 6 4 2 29 29 H 1.00894 * 110.99672 * 330.17944 * 9 7 2 30 30 H 1.08991 * 109.47428 * 298.42946 * 10 9 7 31 31 H 1.09009 * 109.47010 * 58.43111 * 10 9 7 32 32 H 0.97003 * 120.00041 * 179.97438 * 14 13 11 33 33 H 1.08000 * 119.99464 * 359.97438 * 20 19 7 34 34 H 1.07996 * 120.00196 * 180.22734 * 21 20 19 35 35 H 1.07999 * 119.99873 * 179.83323 * 22 21 20 36 36 H 1.07997 * 120.00275 * 179.97438 * 23 22 21 37 37 H 1.07994 * 120.00162 * 359.97438 * 24 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 1.4415 -1.6752 -1.6546 6 8 3.1393 -0.2745 -1.8522 7 6 2.0401 -0.7213 1.2491 8 1 1.7382 -1.7680 1.2131 9 7 3.5057 -0.6358 1.2999 10 6 4.0730 -1.7618 2.0536 11 6 5.5767 -1.6613 2.0512 12 1 6.0623 -0.8426 1.5411 13 6 6.3324 -2.6146 2.7001 14 7 5.7410 -3.6119 3.3209 15 14 8.1961 -2.4896 2.6977 16 1 8.6105 -1.2849 1.9345 17 1 8.6870 -2.3839 4.0953 18 1 8.7727 -3.7010 2.0608 19 6 1.4563 -0.0722 2.4776 20 6 2.0103 1.0934 2.9730 21 6 1.4724 1.6909 4.0974 22 6 0.3855 1.1184 4.7313 23 6 -0.1653 -0.0500 4.2391 24 6 0.3702 -0.6455 3.1123 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 3.4250 -0.7648 -2.6351 29 1 3.8974 -0.5883 0.3713 30 1 3.7085 -1.7322 3.0803 31 1 3.7708 -2.6999 1.5877 32 1 6.2726 -4.2828 3.7771 33 1 2.8617 1.5387 2.4798 34 1 1.9029 2.6035 4.4823 35 1 -0.0331 1.5837 5.6114 36 1 -1.0142 -0.4975 4.7345 37 1 -0.0602 -1.5582 2.7275 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589469735.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:10 Heat of formation + Delta-G solvation = -98.531288 kcal Electronic energy + Delta-G solvation = -19960.746113 eV Core-core repulsion = 16894.392753 eV Total energy + Delta-G solvation = -3066.353360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.71187 -40.21386 -37.64694 -37.19364 -35.31138 -33.54654 -31.66541 -31.54221 -28.96403 -26.44093 -25.51403 -23.80735 -23.20698 -22.19083 -20.86266 -19.34191 -18.67785 -17.90541 -17.54316 -17.07692 -16.64554 -16.23766 -15.87977 -15.39928 -15.03949 -14.73098 -14.44912 -14.22101 -14.08756 -13.70269 -13.64826 -13.29555 -13.16120 -12.92800 -12.71720 -12.60600 -12.47043 -12.22413 -12.02972 -11.88669 -11.73344 -11.48365 -11.27760 -10.70048 -9.67507 -9.51494 -9.30080 -8.24358 -6.36048 0.51473 0.65003 1.08126 1.40068 1.40779 1.54803 2.04459 2.38179 2.98114 3.09256 3.26001 3.76885 3.82084 4.01430 4.15092 4.23722 4.31590 4.40658 4.43787 4.52913 4.75866 4.78433 4.86196 4.91975 5.03833 5.15627 5.18233 5.22418 5.31210 5.52940 5.57114 5.67617 5.74537 5.84916 5.99812 6.24549 6.33056 6.62137 6.84067 6.91669 7.34924 8.87659 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013958 B = 0.007178 C = 0.005288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.540538 B = 3899.842484 C = 5293.366520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.075 4.075 3 H 0.126 0.874 4 C 0.483 3.517 5 O -0.546 6.546 6 O -0.506 6.506 7 C 0.136 3.864 8 H 0.026 0.974 9 N -0.673 5.673 10 C 0.218 3.782 11 C -0.533 4.533 12 H 0.068 0.932 13 C 0.000 4.000 14 N -0.934 5.934 15 Si 0.974 3.026 16 H -0.259 1.259 17 H -0.278 1.278 18 H -0.279 1.279 19 C -0.077 4.077 20 C -0.097 4.097 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.127 4.127 24 C -0.129 4.129 25 H 0.056 0.944 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.426 0.574 29 H 0.338 0.662 30 H 0.000 1.000 31 H -0.049 1.049 32 H 0.265 0.735 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.001 11.237 -3.687 16.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 H 0.144 0.856 4 C 0.327 3.673 5 O -0.437 6.437 6 O -0.319 6.319 7 C 0.025 3.975 8 H 0.044 0.956 9 N -0.305 5.305 10 C 0.090 3.910 11 C -0.571 4.571 12 H 0.086 0.914 13 C -0.198 4.198 14 N -0.574 5.574 15 Si 0.798 3.202 16 H -0.183 1.183 17 H -0.204 1.204 18 H -0.205 1.205 19 C -0.078 4.078 20 C -0.115 4.115 21 C -0.149 4.149 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.147 4.147 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.097 0.903 28 H 0.288 0.712 29 H 0.158 0.842 30 H 0.018 0.982 31 H -0.032 1.032 32 H 0.073 0.927 33 H 0.141 0.859 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -11.226 11.467 -2.848 16.298 hybrid contribution 1.106 -1.787 -1.056 2.353 sum -10.119 9.680 -3.904 14.538 Atomic orbital electron populations 1.21730 0.89742 1.03218 1.04129 1.21244 0.99200 1.01672 0.87337 0.85621 1.23761 0.77395 0.81615 0.84550 1.90680 1.58477 1.28044 1.66461 1.84557 1.42086 1.59652 1.45591 1.20319 0.89189 0.96025 0.91956 0.95622 1.60639 1.02633 1.46380 1.20840 1.19145 0.94347 0.85362 0.92154 1.21540 0.91836 1.09863 1.33904 0.91351 1.25981 1.04502 0.94633 0.94666 1.70118 1.37654 1.13991 1.35652 0.85267 0.78457 0.78415 0.78057 1.18286 1.20394 1.20458 1.19603 0.95828 0.96006 0.96366 1.21110 0.98614 0.95079 0.96718 1.21444 0.96899 1.00937 0.95639 1.21457 0.96420 0.96000 1.00321 1.21335 1.00905 0.96355 0.95935 1.21182 0.96645 0.99999 0.96918 0.92476 0.89466 0.90285 0.71233 0.84233 0.98194 1.03171 0.92666 0.85932 0.84262 0.83591 0.83953 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.35 71.98 0.60 -2.50 16 2 C -0.07 -2.13 2.52 -11.54 -0.03 -2.16 16 3 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 4 C 0.48 14.79 6.54 71.23 0.47 15.26 16 5 O -0.55 -19.73 17.07 21.95 0.37 -19.36 16 6 O -0.51 -12.84 12.50 -51.39 -0.64 -13.48 16 7 C 0.14 4.92 1.83 44.17 0.08 5.00 16 8 H 0.03 1.08 7.62 -2.39 -0.02 1.06 16 9 N -0.67 -28.91 5.54 -499.46 -2.77 -31.68 16 10 C 0.22 11.93 5.25 85.56 0.45 12.38 16 11 C -0.53 -30.63 9.30 25.60 0.24 -30.39 16 12 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 13 C 0.00 0.02 5.46 84.65 0.46 0.49 16 14 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 15 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 16 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 C -0.08 -2.58 3.73 -19.86 -0.07 -2.65 16 20 C -0.10 -3.08 9.33 22.27 0.21 -2.87 16 21 C -0.13 -3.46 10.05 22.27 0.22 -3.24 16 22 C -0.12 -2.93 10.05 22.27 0.22 -2.71 16 23 C -0.13 -3.20 10.05 22.27 0.22 -2.97 16 24 C -0.13 -3.87 8.70 22.27 0.19 -3.68 16 25 H 0.06 1.49 7.86 -2.39 -0.02 1.48 16 26 H 0.09 1.91 6.58 -2.38 -0.02 1.89 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.43 7.17 9.10 -74.06 -0.67 6.50 16 29 H 0.34 13.99 6.60 -89.70 -0.59 13.40 16 30 H 0.00 0.00 8.07 -2.39 -0.02 -0.02 16 31 H -0.05 -2.99 8.02 -2.38 -0.02 -3.01 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.12 4.03 7.71 -2.91 -0.02 4.01 16 34 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 35 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.12 3.38 8.04 -2.91 -0.02 3.36 16 Total: -1.00 -71.75 316.55 2.36 -69.39 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.18 Total: 25.73 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 3.27 Total: -20.04 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -2.48 Total: -88.81 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.27 Total: -32.83 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -71.75 2.36 -69.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589469735.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.139 kcal (2) G-P(sol) polarization free energy of solvation -71.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds