Wall clock time and date at job start Mon Mar 30 2020 00:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47095 * 2 1 4 4 C 1.53000 * 109.47117 * 119.99781 * 2 1 3 5 5 C 1.50702 * 109.47396 * 295.00409 * 4 2 1 6 6 C 1.38284 * 119.92910 * 89.99398 * 5 4 2 7 7 C 1.38102 * 120.07730 * 179.97438 * 6 5 4 8 8 C 1.38905 * 119.92398 * 0.28542 * 7 6 5 9 9 N 1.39669 * 120.07711 * 179.72013 * 8 7 6 10 10 C 1.46502 * 120.00681 * 179.97438 * 9 8 7 11 11 C 1.50691 * 109.47429 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00366 * 0.02562 * 11 10 9 13 13 C 1.37881 * 120.00085 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99793 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00130 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47175 * 60.00105 * 15 13 11 17 17 H 1.48504 * 109.47058 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47035 * 299.99712 * 15 13 11 19 19 C 1.38914 * 119.85122 * 359.43987 * 8 7 6 20 20 C 1.38104 * 119.92314 * 0.53768 * 19 8 7 21 21 C 1.50697 * 109.47535 * 239.99906 * 2 1 3 22 22 O 1.20823 * 120.00198 * 240.00495 * 21 2 1 23 23 O 1.34232 * 119.99711 * 59.99722 * 21 2 1 24 24 H 1.09000 * 109.47095 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47110 * 300.00121 * 1 2 3 26 26 H 1.09000 * 109.47416 * 60.00140 * 1 2 3 27 27 H 1.08998 * 109.47405 * 175.00340 * 4 2 1 28 28 H 1.09005 * 109.47297 * 55.00026 * 4 2 1 29 29 H 1.08000 * 119.96014 * 359.97438 * 6 5 4 30 30 H 1.08002 * 120.03497 * 180.02562 * 7 6 5 31 31 H 0.97008 * 120.00083 * 0.02562 * 9 8 7 32 32 H 1.08995 * 109.47221 * 300.00552 * 10 9 8 33 33 H 1.09006 * 109.46597 * 60.00077 * 10 9 8 34 34 H 0.97000 * 120.00169 * 179.97438 * 14 13 11 35 35 H 1.07997 * 120.04003 * 180.25530 * 19 8 7 36 36 H 1.08007 * 119.96360 * 179.74357 * 20 19 8 37 37 H 0.96701 * 116.99479 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0570 2.4766 6 6 0.4346 -0.2063 3.0988 7 6 0.0664 0.5047 4.2240 8 6 0.9069 1.4894 4.7273 9 7 0.5351 2.2144 5.8617 10 6 1.4230 3.2522 6.3916 11 6 0.7932 3.8789 7.6087 12 1 -0.1719 3.5380 7.9534 13 6 1.4489 4.8875 8.2823 14 7 2.6243 5.3023 7.8628 15 14 0.6684 5.6639 9.7914 16 1 0.4515 4.6226 10.8276 17 1 1.5685 6.7160 10.3284 18 1 -0.6348 6.2700 9.4182 19 6 2.1209 1.7474 4.1033 20 6 2.4832 1.0324 2.9787 21 6 2.0324 -0.7104 -1.2304 22 8 2.7270 -1.6928 -1.1195 23 8 1.7081 -0.2518 -2.4496 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.1262 -0.7994 1.2057 28 1 1.6053 -1.7198 1.2952 29 1 -0.2205 -0.9688 2.7042 30 1 -0.8759 0.2982 4.7096 31 1 -0.3109 2.0302 6.2993 32 1 2.3795 2.8069 6.6655 33 1 1.5827 4.0166 5.6311 34 1 3.0855 6.0122 8.3364 35 1 2.7786 2.5095 4.4945 36 1 3.4250 1.2354 2.4906 37 1 2.0536 -0.7410 -3.2088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609752762.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:15 Heat of formation + Delta-G solvation = -88.888089 kcal Electronic energy + Delta-G solvation = -18764.612488 eV Core-core repulsion = 15698.677289 eV Total energy + Delta-G solvation = -3065.935199 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57341 -39.03477 -36.49660 -35.86184 -34.12366 -32.53777 -30.50555 -29.61813 -27.29396 -25.69437 -24.20811 -23.08236 -21.75034 -20.63894 -19.85451 -18.21570 -17.33515 -16.88447 -15.95085 -15.85669 -15.25347 -14.73673 -14.53578 -14.09863 -13.87444 -13.27110 -13.22362 -13.10866 -12.85817 -12.65622 -12.19748 -12.04307 -11.82744 -11.70388 -11.26221 -11.15590 -11.11069 -10.92018 -10.84866 -10.50738 -10.44081 -10.12313 -9.43967 -9.33548 -8.56111 -8.41943 -6.54661 -6.23652 -4.29201 1.94421 2.05103 2.07717 2.92194 3.22115 3.26952 3.28666 4.22941 4.33542 4.55678 4.73805 4.77532 4.94147 5.13486 5.29382 5.34228 5.38007 5.52131 5.62731 5.69905 5.78973 5.92723 6.04933 6.08233 6.23389 6.29635 6.37325 6.51509 6.88993 6.95298 7.09877 7.14648 7.39368 7.43571 7.63435 7.72056 7.91969 8.26022 8.63748 8.87084 9.37314 10.86900 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.048032 B = 0.003133 C = 0.003069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.801048 B = 8935.763991 C = 9121.453559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 H 0.111 0.889 4 C -0.049 4.049 5 C -0.175 4.175 6 C -0.062 4.062 7 C -0.217 4.217 8 C 0.234 3.766 9 N -0.729 5.729 10 C 0.251 3.749 11 C -0.541 4.541 12 H 0.061 0.939 13 C 0.064 3.936 14 N -0.889 5.889 15 Si 0.904 3.096 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.201 4.201 20 C -0.062 4.062 21 C 0.482 3.518 22 O -0.518 6.518 23 O -0.517 6.517 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.391 0.609 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.124 0.876 36 H 0.112 0.888 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.246 -9.903 -15.887 19.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.097 4.097 3 H 0.128 0.872 4 C -0.086 4.086 5 C -0.178 4.178 6 C -0.081 4.081 7 C -0.240 4.240 8 C 0.124 3.876 9 N -0.351 5.351 10 C 0.130 3.870 11 C -0.579 4.579 12 H 0.080 0.920 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.731 3.269 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.224 4.224 20 C -0.081 4.081 21 C 0.324 3.676 22 O -0.406 6.406 23 O -0.329 6.329 24 H 0.076 0.924 25 H 0.101 0.899 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.224 0.776 32 H 0.038 0.962 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.142 0.858 36 H 0.130 0.870 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -2.912 -9.619 -15.348 18.345 hybrid contribution -0.354 0.156 0.516 0.645 sum -3.265 -9.462 -14.832 17.894 Atomic orbital electron populations 1.21840 0.91932 1.02659 1.03823 1.21132 0.98573 1.01173 0.88844 0.87152 1.20247 1.01320 0.97639 0.89402 1.19163 0.97039 1.02063 0.99523 1.20570 0.95227 0.97888 0.94419 1.20502 1.01228 1.01452 1.00863 1.18105 0.92619 0.89754 0.87074 1.45554 1.23347 1.38998 1.27180 1.19104 0.89554 0.84804 0.93573 1.21163 1.05298 1.19775 1.11693 0.92049 1.24930 0.94818 0.96353 0.97845 1.69932 1.13762 1.28612 1.40345 0.86465 0.79108 0.78937 0.82395 1.20052 1.21011 1.20046 1.20735 0.97586 1.04924 0.99202 1.20684 0.98112 0.94307 0.94972 1.23824 0.76567 0.82403 0.84783 1.90710 1.36114 1.26426 1.87315 1.84572 1.72332 1.59033 1.16967 0.92390 0.89918 0.91703 0.90792 0.91004 0.87103 0.86962 0.77578 0.96160 0.96148 0.92369 0.85816 0.86989 0.73572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.69 37.15 0.32 -1.01 16 2 C -0.08 -0.80 2.82 -91.78 -0.26 -1.06 16 3 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 4 C -0.05 -0.57 4.19 -27.88 -0.12 -0.68 16 5 C -0.18 -2.40 4.72 -104.59 -0.49 -2.90 16 6 C -0.06 -0.86 7.95 -39.61 -0.31 -1.17 16 7 C -0.22 -3.44 9.90 -39.38 -0.39 -3.83 16 8 C 0.23 4.39 6.65 -83.79 -0.56 3.84 16 9 N -0.73 -15.21 5.72 -59.81 -0.34 -15.55 16 10 C 0.25 6.29 4.67 -5.20 -0.02 6.27 16 11 C -0.54 -14.52 9.28 -34.44 -0.32 -14.84 16 12 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 14 N -0.89 -25.37 13.29 55.43 0.74 -24.64 16 15 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 19 C -0.20 -3.69 9.31 -39.38 -0.37 -4.06 16 20 C -0.06 -0.95 9.69 -39.61 -0.38 -1.33 16 21 C 0.48 5.11 7.63 36.00 0.27 5.38 16 22 O -0.52 -6.99 16.68 -18.75 -0.31 -7.30 16 23 O -0.52 -4.19 13.33 -39.26 -0.52 -4.71 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.08 0.83 6.26 -51.93 -0.33 0.50 16 26 H 0.06 0.54 8.11 -51.93 -0.42 0.12 16 27 H 0.07 0.89 7.90 -51.93 -0.41 0.48 16 28 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.11 1.26 8.04 -52.49 -0.42 0.84 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.39 7.58 8.33 -40.82 -0.34 7.24 16 32 H 0.02 0.55 7.94 -51.93 -0.41 0.14 16 33 H 0.02 0.55 7.96 -51.93 -0.41 0.14 16 34 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 35 H 0.12 2.45 6.73 -52.49 -0.35 2.09 16 36 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.41 1.58 9.10 45.56 0.41 1.99 16 LS Contribution 317.58 15.07 4.79 4.79 Total: -1.00 -30.45 317.58 -7.73 -38.18 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -4.33 Total: 7.31 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -2.72 Total: -13.75 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.39 Total: -40.19 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: -0.84 Total: -12.01 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.45 -7.73 -38.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609752762.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.711 kcal (2) G-P(sol) polarization free energy of solvation -30.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds