Wall clock time and date at job start Mon Mar 30 2020 00:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.50705 * 109.47390 * 64.99953 * 4 2 1 6 6 C 1.38279 * 119.92723 * 269.73365 * 5 4 2 7 7 C 1.38110 * 120.07575 * 179.72404 * 6 5 4 8 8 C 1.38902 * 119.92156 * 0.53830 * 7 6 5 9 9 N 1.39671 * 120.07545 * 179.70751 * 8 7 6 10 10 C 1.46501 * 120.00048 * 0.02562 * 9 8 7 11 11 C 1.50701 * 109.47374 * 180.02562 * 10 9 8 12 12 H 1.07997 * 119.99775 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00021 * 180.02562 * 11 10 9 14 14 N 1.31518 * 120.00058 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00048 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.46904 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46803 * 119.99668 * 15 13 11 18 18 H 1.48491 * 109.47157 * 239.99710 * 15 13 11 19 19 C 1.38913 * 119.85331 * 359.73546 * 8 7 6 20 20 C 1.38102 * 119.92340 * 359.97438 * 19 8 7 21 21 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 22 22 O 1.20827 * 120.00172 * 119.99679 * 21 2 1 23 23 O 1.34231 * 120.00242 * 300.00144 * 21 2 1 24 24 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 25 25 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 26 26 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47630 * 185.00216 * 4 2 1 28 28 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 29 29 H 1.08007 * 119.96245 * 359.97022 * 6 5 4 30 30 H 1.07996 * 120.03901 * 180.27192 * 7 6 5 31 31 H 0.97003 * 120.00434 * 180.02562 * 9 8 7 32 32 H 1.09005 * 109.46888 * 300.00348 * 10 9 8 33 33 H 1.09001 * 109.46816 * 59.99782 * 10 9 8 34 34 H 0.97002 * 119.99809 * 180.02562 * 14 13 11 35 35 H 1.08000 * 120.04101 * 180.02562 * 19 8 7 36 36 H 1.08004 * 119.96634 * 179.97438 * 20 19 8 37 37 H 0.96696 * 117.00233 * 180.02562 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 6 0.4373 -0.2102 -3.1020 7 6 0.0663 0.5050 -4.2237 8 6 0.9093 1.4860 -4.7301 9 7 0.5400 2.2070 -5.8679 10 6 -0.7379 1.9295 -6.5283 11 6 -0.8940 2.8362 -7.7218 12 1 -0.1190 3.5484 -7.9639 13 6 -2.0266 2.7574 -8.5040 14 7 -2.9706 1.8904 -8.2089 15 14 -2.2205 3.8818 -9.9831 16 1 -1.0273 4.7584 -10.0981 17 1 -2.3523 3.0620 -11.2142 18 1 -3.4355 4.7184 -9.8129 19 6 2.1207 1.7480 -4.1028 20 6 2.4827 1.0332 -2.9780 21 6 2.0323 -0.7104 1.2305 22 8 2.7269 -1.6928 1.1196 23 8 1.7080 -0.2518 2.4496 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1263 -0.7996 -1.2056 28 1 1.6053 -1.7198 -1.2952 29 1 -0.2156 -0.9764 -2.7105 30 1 -0.8762 0.2989 -4.7091 31 1 1.1297 2.8916 -6.2209 32 1 -0.7589 0.8903 -6.8567 33 1 -1.5545 2.1058 -5.8282 34 1 -3.7673 1.8347 -8.7594 35 1 2.7782 2.5103 -4.4937 36 1 3.4246 1.2360 -2.4899 37 1 2.0541 -0.7406 3.2089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609752773.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:37:17 Heat of formation + Delta-G solvation = -88.987298 kcal Electronic energy + Delta-G solvation = -18779.134039 eV Core-core repulsion = 15713.194538 eV Total energy + Delta-G solvation = -3065.939501 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.57315 -39.03479 -36.49626 -35.85704 -34.12999 -32.53630 -30.43685 -29.71110 -27.21457 -25.73241 -24.22513 -23.06464 -21.65776 -20.80934 -19.76376 -18.22010 -17.29989 -16.92423 -15.96558 -15.84071 -15.28852 -14.75239 -14.42947 -14.11766 -13.85601 -13.40936 -13.21632 -12.94293 -12.86119 -12.69574 -12.18573 -12.04784 -11.83222 -11.70578 -11.25890 -11.15722 -11.07675 -10.95513 -10.82229 -10.51150 -10.42919 -10.13516 -9.40986 -9.33999 -8.56590 -8.42262 -6.54739 -6.24248 -4.29506 1.94314 2.04861 2.07811 2.92155 3.19692 3.27363 3.30709 4.22832 4.33592 4.55562 4.74159 4.78593 4.95087 5.13167 5.30870 5.33643 5.38163 5.52014 5.65329 5.72710 5.79860 5.92542 6.05646 6.12118 6.23291 6.30217 6.36886 6.51471 6.88997 6.95189 7.09738 7.14449 7.39028 7.43714 7.63570 7.71919 7.91538 8.25915 8.63877 8.87085 9.37170 10.86374 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.049312 B = 0.003158 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.673356 B = 8865.495968 C = 9116.428018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.077 4.077 3 H 0.109 0.891 4 C -0.049 4.049 5 C -0.175 4.175 6 C -0.060 4.060 7 C -0.202 4.202 8 C 0.234 3.766 9 N -0.729 5.729 10 C 0.250 3.750 11 C -0.539 4.539 12 H 0.062 0.938 13 C 0.063 3.937 14 N -0.888 5.888 15 Si 0.903 3.097 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C -0.216 4.216 20 C -0.064 4.064 21 C 0.481 3.519 22 O -0.518 6.518 23 O -0.517 6.517 24 H 0.064 0.936 25 H 0.083 0.917 26 H 0.058 0.942 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.391 0.609 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.265 0.735 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.913 -3.105 16.586 18.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.127 0.873 4 C -0.086 4.086 5 C -0.178 4.178 6 C -0.079 4.079 7 C -0.225 4.225 8 C 0.124 3.876 9 N -0.351 5.351 10 C 0.129 3.871 11 C -0.578 4.578 12 H 0.080 0.920 13 C -0.140 4.140 14 N -0.526 5.526 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.207 1.207 19 C -0.240 4.240 20 C -0.083 4.083 21 C 0.324 3.676 22 O -0.406 6.406 23 O -0.329 6.329 24 H 0.083 0.917 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.142 0.858 31 H 0.224 0.776 32 H 0.039 0.961 33 H 0.039 0.961 34 H 0.075 0.925 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.533 -3.256 16.003 17.985 hybrid contribution 0.238 0.507 -0.484 0.741 sum 7.771 -2.748 15.519 17.572 Atomic orbital electron populations 1.21852 0.91799 1.02830 1.03892 1.21128 0.98669 1.01020 0.88812 0.87271 1.20249 1.01171 0.97786 0.89415 1.19162 0.97129 1.02010 0.99482 1.20688 0.95105 0.97754 0.94349 1.20740 1.01650 1.00198 0.99931 1.18105 0.92186 0.90316 0.86947 1.45554 1.23299 1.39346 1.26886 1.19118 0.79575 0.96651 0.91760 1.21237 1.04719 1.20585 1.11216 0.91952 1.24934 0.95398 0.95675 0.97991 1.69955 1.08455 1.35013 1.39212 0.86358 0.78210 0.80355 0.82013 1.19647 1.20752 1.20747 1.20496 0.97653 1.05601 1.00219 1.20565 0.98021 0.94639 0.95054 1.23836 0.76540 0.82421 0.84787 1.90711 1.36157 1.26401 1.87320 1.84571 1.72316 1.59050 1.16965 0.91691 0.89829 0.92282 0.90893 0.90914 0.86921 0.85804 0.77573 0.96149 0.96134 0.92492 0.86974 0.87181 0.73579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.70 37.16 0.32 -1.10 16 2 C -0.08 -0.79 2.82 -91.77 -0.26 -1.05 16 3 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 4 C -0.05 -0.57 4.19 -27.88 -0.12 -0.69 16 5 C -0.18 -2.40 4.71 -104.59 -0.49 -2.89 16 6 C -0.06 -0.90 7.97 -39.61 -0.32 -1.22 16 7 C -0.20 -3.67 9.31 -39.38 -0.37 -4.03 16 8 C 0.23 4.39 6.65 -83.79 -0.56 3.83 16 9 N -0.73 -15.20 5.73 -59.81 -0.34 -15.54 16 10 C 0.25 6.25 4.67 -5.19 -0.02 6.23 16 11 C -0.54 -14.45 9.28 -34.44 -0.32 -14.77 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 14 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 15 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 19 C -0.22 -3.46 9.90 -39.38 -0.39 -3.85 16 20 C -0.06 -0.90 9.69 -39.61 -0.38 -1.28 16 21 C 0.48 5.09 7.63 36.01 0.27 5.37 16 22 O -0.52 -6.97 16.68 -18.75 -0.31 -7.28 16 23 O -0.52 -4.18 13.33 -39.26 -0.52 -4.70 16 24 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 25 H 0.08 0.90 6.28 -51.93 -0.33 0.58 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.86 7.90 -51.93 -0.41 0.45 16 28 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 29 H 0.11 1.47 8.05 -52.48 -0.42 1.04 16 30 H 0.12 2.42 6.73 -52.49 -0.35 2.07 16 31 H 0.39 7.60 8.33 -40.82 -0.34 7.26 16 32 H 0.02 0.55 7.95 -51.93 -0.41 0.14 16 33 H 0.02 0.55 7.95 -51.93 -0.41 0.14 16 34 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.11 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.41 1.57 9.10 45.56 0.41 1.98 16 LS Contribution 317.63 15.07 4.79 4.79 Total: -1.00 -30.40 317.63 -7.73 -38.13 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.33 Total: 7.33 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: -2.72 Total: -13.83 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.39 Total: -40.10 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -0.84 Total: -11.98 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.40 -7.73 -38.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609752773.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.862 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds