Wall clock time and date at job start Mon Mar 30 2020 00:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47319 * 2 1 4 4 O 1.42900 * 109.47440 * 179.97438 * 3 2 1 5 5 N 1.41589 * 114.00157 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00312 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99731 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00578 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.46940 * 59.99830 * 8 6 5 10 10 C 1.50699 * 109.46615 * 299.99953 * 8 6 5 11 11 H 1.08003 * 119.99853 * 125.77753 * 10 8 6 12 12 C 1.37873 * 120.00411 * 305.76806 * 10 8 6 13 13 N 1.31522 * 119.99791 * 5.09607 * 12 10 8 14 14 Si 1.86797 * 120.00333 * 185.09658 * 12 10 8 15 15 H 1.48499 * 109.47122 * 60.00121 * 14 12 10 16 16 H 1.48496 * 109.47451 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47043 * 300.00091 * 14 12 10 18 18 C 1.50695 * 109.47233 * 179.97438 * 8 6 5 19 19 C 1.38241 * 120.00079 * 115.08111 * 18 8 6 20 20 C 1.38232 * 120.00134 * 180.02562 * 19 18 8 21 21 C 1.38232 * 119.99933 * 359.94662 * 20 19 18 22 22 C 1.38235 * 120.00276 * 0.02562 * 21 20 19 23 23 C 1.38236 * 119.99966 * 295.05576 * 18 8 6 24 24 H 1.09005 * 109.47221 * 300.00323 * 1 2 3 25 25 H 1.09002 * 109.47361 * 59.99926 * 1 2 3 26 26 H 1.08995 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47175 * 240.00292 * 2 1 3 28 28 H 1.09004 * 109.47083 * 119.99612 * 2 1 3 29 29 H 1.09006 * 109.46779 * 59.99952 * 3 2 1 30 30 H 1.09002 * 109.46965 * 300.00317 * 3 2 1 31 31 H 0.97005 * 120.00251 * 0.02562 * 5 4 3 32 32 H 0.96998 * 120.00050 * 179.97438 * 13 12 10 33 33 H 1.08003 * 119.99372 * 359.97249 * 19 18 8 34 34 H 1.07996 * 119.99817 * 179.97438 * 20 19 18 35 35 H 1.08007 * 119.99989 * 179.72391 * 21 20 19 36 36 H 1.07996 * 120.00058 * 179.97438 * 22 21 20 37 37 H 1.07996 * 120.00272 * 0.02562 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 7 4.0449 2.7361 0.0012 6 6 5.3853 2.8770 0.0013 7 8 6.0982 1.8958 0.0013 8 6 5.9983 4.2537 0.0014 9 1 5.6766 4.7946 0.8914 10 6 5.5537 5.0015 -1.2291 11 1 5.0870 5.9707 -1.1328 12 6 5.7429 4.4486 -2.4778 13 7 6.2187 3.2277 -2.5912 14 14 5.3233 5.4333 -4.0087 15 1 6.1392 6.6738 -4.0384 16 1 5.6150 4.6196 -5.2162 17 1 3.8818 5.7893 -3.9887 18 6 7.5005 4.1347 0.0021 19 6 8.2302 4.5858 -1.0819 20 6 9.6082 4.4761 -1.0815 21 6 10.2566 3.9164 0.0034 22 6 9.5271 3.4657 1.0877 23 6 8.1490 3.5748 1.0870 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.4748 3.5209 0.0016 32 1 6.3515 2.8386 -3.4697 33 1 7.7235 5.0232 -1.9295 34 1 10.1781 4.8282 -1.9286 35 1 11.3329 3.8266 0.0018 36 1 10.0337 3.0280 1.9350 37 1 7.5790 3.2224 1.9339 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639014565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:44 Heat of formation + Delta-G solvation = -12.217319 kcal Electronic energy + Delta-G solvation = -19959.398180 eV Core-core repulsion = 16896.787674 eV Total energy + Delta-G solvation = -3062.610505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.82622 -37.61323 -36.44107 -33.73278 -33.55988 -31.00499 -30.46178 -29.66353 -27.22060 -25.68063 -23.89918 -21.54695 -21.27895 -20.76280 -19.19931 -17.40200 -16.84260 -15.75665 -15.69191 -15.22839 -14.83385 -14.17283 -14.01498 -13.77890 -13.60727 -13.03554 -12.76194 -12.40704 -12.22896 -12.15621 -11.98217 -11.91391 -11.37699 -11.14030 -11.01910 -10.94366 -10.81943 -10.41163 -10.17065 -10.07212 -9.77067 -9.43696 -8.67607 -8.31806 -7.77988 -7.72887 -7.45536 -6.20363 -4.37348 2.42036 2.56909 2.99042 3.17799 3.25929 3.26638 4.17382 4.37843 4.92367 4.98525 5.03163 5.04124 5.10515 5.47445 5.53075 5.71583 5.76956 5.82714 5.92202 5.93057 6.01774 6.13890 6.24787 6.30055 6.45125 6.59817 6.73568 6.83061 7.05922 7.19510 7.48459 7.59033 7.65978 7.74366 7.93717 8.10747 8.22508 8.52903 8.74062 9.28693 9.80062 10.80004 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.006849 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.860453 B = 4087.492741 C = 5299.203611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.036 3.964 4 O -0.162 6.162 5 N -0.599 5.599 6 C 0.564 3.436 7 O -0.531 6.531 8 C 0.071 3.929 9 H 0.061 0.939 10 C -0.548 4.548 11 H 0.071 0.929 12 C 0.070 3.930 13 N -0.839 5.839 14 Si 0.889 3.111 15 H -0.271 1.271 16 H -0.285 1.285 17 H -0.275 1.275 18 C -0.020 4.020 19 C -0.057 4.057 20 C -0.149 4.149 21 C -0.141 4.141 22 C -0.143 4.143 23 C -0.112 4.112 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.400 0.600 32 H 0.269 0.731 33 H 0.137 0.863 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 0.419 4.373 7.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C -0.042 4.042 4 O -0.164 6.164 5 N -0.304 5.304 6 C 0.353 3.647 7 O -0.405 6.405 8 C 0.049 3.951 9 H 0.079 0.921 10 C -0.586 4.586 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.472 5.472 14 Si 0.716 3.284 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.021 4.021 19 C -0.075 4.075 20 C -0.167 4.167 21 C -0.159 4.159 22 C -0.161 4.161 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.239 0.761 32 H 0.080 0.920 33 H 0.155 0.845 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.122 0.878 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.877 -0.677 4.224 6.487 hybrid contribution -0.822 0.639 -1.150 1.551 sum -5.699 -0.038 3.074 6.475 Atomic orbital electron populations 1.21682 0.94694 1.02017 1.02005 1.21388 0.95553 0.95203 1.03564 1.22834 0.82742 0.98202 1.00437 1.90509 1.17944 1.10721 1.97244 1.47825 1.05837 0.95790 1.80943 1.21373 0.78162 0.92504 0.72655 1.90549 1.59973 1.40898 1.49053 1.17806 0.89386 0.89282 0.98626 0.92114 1.20747 1.43657 1.04946 0.89202 0.91097 1.25106 0.94405 0.94889 0.99395 1.70069 1.40095 1.12278 1.24719 0.86691 0.79199 0.80237 0.82305 1.19664 1.21096 1.20003 1.19748 0.95416 0.94449 0.92487 1.21431 0.91998 0.96085 0.98001 1.21068 0.95373 1.02361 0.97882 1.20817 0.98347 1.01757 0.94998 1.20788 0.94287 1.02621 0.98387 1.20913 0.93986 0.99389 0.98750 0.92558 0.92496 0.92116 0.90933 0.91058 0.93126 0.92839 0.76144 0.92016 0.84498 0.87859 0.87997 0.87848 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.15 0.37 -1.05 16 2 C -0.12 -1.52 6.30 -26.73 -0.17 -1.69 16 3 C 0.04 0.55 6.23 37.16 0.23 0.78 16 4 O -0.16 -3.46 11.11 -29.66 -0.33 -3.79 16 5 N -0.60 -13.19 6.29 31.22 0.20 -12.99 16 6 C 0.56 14.24 5.51 -10.98 -0.06 14.18 16 7 O -0.53 -15.51 15.56 -12.64 -0.20 -15.71 16 8 C 0.07 1.68 2.67 -94.08 -0.25 1.43 16 9 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 10 C -0.55 -13.25 7.62 -34.44 -0.26 -13.51 16 11 H 0.07 1.63 7.82 -52.48 -0.41 1.22 16 12 C 0.07 1.76 3.19 -17.82 -0.06 1.70 16 13 N -0.84 -23.01 10.42 55.43 0.58 -22.43 16 14 Si 0.89 19.49 29.54 -169.99 -5.02 14.47 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 C -0.02 -0.48 4.50 -104.62 -0.47 -0.95 16 19 C -0.06 -1.36 8.01 -39.58 -0.32 -1.68 16 20 C -0.15 -3.14 10.05 -39.59 -0.40 -3.54 16 21 C -0.14 -2.77 10.05 -39.58 -0.40 -3.17 16 22 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 23 C -0.11 -2.49 8.74 -39.58 -0.35 -2.84 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.40 7.57 8.43 -40.82 -0.34 7.23 16 32 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.14 3.41 4.97 -52.48 -0.26 3.15 16 34 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 35 H 0.10 1.68 8.06 -52.48 -0.42 1.25 16 36 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 313.94 15.07 4.73 4.73 Total: -1.00 -31.32 313.94 -7.79 -39.11 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.22 Total: 10.21 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.53 Total: -13.60 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: 0.77 Total: -35.42 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -0.53 Total: -19.50 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.32 -7.79 -39.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639014565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.896 kcal (2) G-P(sol) polarization free energy of solvation -31.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds