Wall clock time and date at job start Mon Mar 30 2020 00:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47319 * 2 1 4 4 O 1.42900 * 109.47440 * 179.97438 * 3 2 1 5 5 N 1.41589 * 114.00157 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00312 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99731 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00578 * 179.97438 * 6 5 4 9 9 H 1.08998 * 109.46940 * 59.99830 * 8 6 5 10 10 C 1.50699 * 109.46615 * 299.99953 * 8 6 5 11 11 H 1.08003 * 119.99853 * 125.77753 * 10 8 6 12 12 C 1.37873 * 120.00411 * 305.76806 * 10 8 6 13 13 N 1.31522 * 119.99791 * 5.09607 * 12 10 8 14 14 Si 1.86797 * 120.00333 * 185.09658 * 12 10 8 15 15 H 1.48499 * 109.47122 * 60.00121 * 14 12 10 16 16 H 1.48496 * 109.47451 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47043 * 300.00091 * 14 12 10 18 18 C 1.50695 * 109.47233 * 179.97438 * 8 6 5 19 19 C 1.38241 * 120.00079 * 115.08111 * 18 8 6 20 20 C 1.38232 * 120.00134 * 180.02562 * 19 18 8 21 21 C 1.38232 * 119.99933 * 359.94662 * 20 19 18 22 22 C 1.38235 * 120.00276 * 0.02562 * 21 20 19 23 23 C 1.38236 * 119.99966 * 295.05576 * 18 8 6 24 24 H 1.09005 * 109.47221 * 300.00323 * 1 2 3 25 25 H 1.09002 * 109.47361 * 59.99926 * 1 2 3 26 26 H 1.08995 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47175 * 240.00292 * 2 1 3 28 28 H 1.09004 * 109.47083 * 119.99612 * 2 1 3 29 29 H 1.09006 * 109.46779 * 59.99952 * 3 2 1 30 30 H 1.09002 * 109.46965 * 300.00317 * 3 2 1 31 31 H 0.97005 * 120.00251 * 0.02562 * 5 4 3 32 32 H 0.96998 * 120.00050 * 179.97438 * 13 12 10 33 33 H 1.08003 * 119.99372 * 359.97249 * 19 18 8 34 34 H 1.07996 * 119.99817 * 179.97438 * 20 19 18 35 35 H 1.08007 * 119.99989 * 179.72391 * 21 20 19 36 36 H 1.07996 * 120.00058 * 179.97438 * 22 21 20 37 37 H 1.07996 * 120.00272 * 0.02562 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4690 1.4426 0.0006 5 7 4.0449 2.7361 0.0012 6 6 5.3853 2.8770 0.0013 7 8 6.0982 1.8958 0.0013 8 6 5.9983 4.2537 0.0014 9 1 5.6766 4.7946 0.8914 10 6 5.5537 5.0015 -1.2291 11 1 5.0870 5.9707 -1.1328 12 6 5.7429 4.4486 -2.4778 13 7 6.2187 3.2277 -2.5912 14 14 5.3233 5.4333 -4.0087 15 1 6.1392 6.6738 -4.0384 16 1 5.6150 4.6196 -5.2162 17 1 3.8818 5.7893 -3.9887 18 6 7.5005 4.1347 0.0021 19 6 8.2302 4.5858 -1.0819 20 6 9.6082 4.4761 -1.0815 21 6 10.2566 3.9164 0.0034 22 6 9.5271 3.4657 1.0877 23 6 8.1490 3.5748 1.0870 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.4748 3.5209 0.0016 32 1 6.3515 2.8386 -3.4697 33 1 7.7235 5.0232 -1.9295 34 1 10.1781 4.8282 -1.9286 35 1 11.3329 3.8266 0.0018 36 1 10.0337 3.0280 1.9350 37 1 7.5790 3.2224 1.9339 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639014565.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:43 Heat of formation + Delta-G solvation = -30.359340 kcal Electronic energy + Delta-G solvation = -19960.184877 eV Core-core repulsion = 16896.787674 eV Total energy + Delta-G solvation = -3063.397202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.61403 -39.26778 -38.07783 -35.59411 -34.81065 -32.83896 -32.10437 -31.32933 -28.94072 -26.87634 -25.74133 -22.95249 -22.76910 -22.35815 -20.99040 -19.07056 -18.66181 -17.37370 -17.13730 -16.88077 -16.68846 -15.79876 -15.51028 -15.40257 -15.04972 -14.57431 -14.35662 -14.08454 -13.86170 -13.72633 -13.43452 -13.05815 -12.97322 -12.66957 -12.59241 -12.28587 -12.20275 -12.08337 -11.79953 -11.52634 -11.46211 -11.23166 -10.59988 -10.25998 -9.50827 -9.43893 -9.14869 -8.12146 -6.33032 0.76822 0.90134 1.38221 1.44425 1.46677 1.53096 2.32152 2.48893 3.14517 3.28263 3.80724 3.93898 4.02208 4.29743 4.32213 4.35302 4.47596 4.55559 4.56527 4.60359 4.68062 4.83517 4.95849 4.97492 5.07862 5.14495 5.15656 5.33417 5.40464 5.54410 5.66693 5.85410 5.89985 5.96024 6.25759 6.37957 6.50346 6.69933 6.92988 7.36189 7.94320 8.87041 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017708 B = 0.006849 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.860453 B = 4087.492741 C = 5299.203611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C 0.028 3.972 4 O -0.192 6.192 5 N -0.592 5.592 6 C 0.562 3.438 7 O -0.580 6.580 8 C 0.063 3.937 9 H 0.080 0.920 10 C -0.543 4.543 11 H 0.081 0.919 12 C 0.035 3.965 13 N -0.876 5.876 14 Si 0.945 3.055 15 H -0.264 1.264 16 H -0.297 1.297 17 H -0.265 1.265 18 C -0.045 4.045 19 C -0.084 4.084 20 C -0.156 4.156 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.129 4.129 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.413 0.587 32 H 0.259 0.741 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.141 0.859 36 H 0.137 0.863 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.928 1.078 4.848 7.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C -0.049 4.049 4 O -0.196 6.196 5 N -0.295 5.295 6 C 0.352 3.648 7 O -0.457 6.457 8 C 0.041 3.959 9 H 0.098 0.902 10 C -0.581 4.581 11 H 0.100 0.900 12 C -0.169 4.169 13 N -0.510 5.510 14 Si 0.770 3.230 15 H -0.188 1.188 16 H -0.223 1.223 17 H -0.190 1.190 18 C -0.046 4.046 19 C -0.102 4.102 20 C -0.174 4.174 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.148 4.148 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.254 0.746 32 H 0.068 0.932 33 H 0.136 0.864 34 H 0.143 0.857 35 H 0.159 0.841 36 H 0.155 0.845 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.263 0.033 4.715 7.066 hybrid contribution -0.760 0.419 -1.229 1.505 sum -6.023 0.452 3.485 6.974 Atomic orbital electron populations 1.21654 0.91796 1.03347 1.02840 1.21446 0.97839 0.93277 1.02884 1.23226 0.79699 1.00287 1.01701 1.90488 1.21527 1.10179 1.97432 1.47556 1.05577 0.96908 1.79501 1.21608 0.78801 0.92473 0.71876 1.90502 1.61359 1.42376 1.51476 1.17948 0.89876 0.88772 0.99291 0.90215 1.21007 1.42619 1.05026 0.89407 0.90046 1.25679 0.94150 0.95254 1.01832 1.70250 1.42325 1.14128 1.24276 0.85802 0.79395 0.78950 0.78809 1.18833 1.22330 1.19000 1.19874 0.95560 0.95731 0.93420 1.21408 0.93416 0.97690 0.97662 1.21378 0.94596 1.02124 0.99278 1.21243 1.00330 1.00040 0.93873 1.21210 0.93548 1.01631 0.99628 1.21087 0.95320 0.99792 0.98553 0.91289 0.92083 0.90582 0.92285 0.91171 0.90811 0.92424 0.74605 0.93169 0.86354 0.85685 0.84100 0.84538 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.91 71.98 0.71 -1.66 16 2 C -0.12 -2.86 6.30 30.60 0.19 -2.66 16 3 C 0.03 0.83 6.23 71.98 0.45 1.28 16 4 O -0.19 -8.32 11.11 -21.36 -0.24 -8.56 16 5 N -0.59 -26.23 6.29 -173.53 -1.09 -27.32 16 6 C 0.56 28.91 5.51 87.66 0.48 29.40 16 7 O -0.58 -34.83 15.56 14.35 0.22 -34.60 16 8 C 0.06 3.00 2.67 -13.03 -0.03 2.97 16 9 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 10 C -0.54 -26.23 7.62 25.60 0.19 -26.04 16 11 H 0.08 3.67 7.82 -2.91 -0.02 3.65 16 12 C 0.04 1.77 3.19 84.65 0.27 2.04 16 13 N -0.88 -49.21 10.42 21.45 0.22 -48.99 16 14 Si 0.95 40.10 29.54 68.60 2.03 42.13 16 15 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 16 H -0.30 -13.08 7.11 99.48 0.71 -12.38 16 17 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 18 C -0.04 -2.18 4.50 -19.87 -0.09 -2.27 16 19 C -0.08 -4.02 8.01 22.27 0.18 -3.84 16 20 C -0.16 -6.40 10.05 22.27 0.22 -6.18 16 21 C -0.14 -5.03 10.05 22.27 0.22 -4.81 16 22 C -0.14 -5.44 10.05 22.27 0.22 -5.22 16 23 C -0.13 -5.72 8.74 22.27 0.19 -5.53 16 24 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 25 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.41 15.51 8.43 -92.70 -0.78 14.73 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.12 6.01 4.97 -2.91 -0.01 6.00 16 34 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 36 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -68.61 313.94 4.65 -63.96 By element: Atomic # 1 Polarization: 35.61 SS G_CDS: 0.28 Total: 35.89 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 3.22 Total: -22.51 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -0.87 Total: -76.30 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.01 Total: -43.17 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -68.61 4.65 -63.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639014565.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.603 kcal (2) G-P(sol) polarization free energy of solvation -68.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds