Wall clock time and date at job start Mon Mar 30 2020 00:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 O 1.42904 * 109.47362 * 179.97438 * 3 2 1 5 5 N 1.41592 * 114.00116 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99853 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99645 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.47926 * 321.82455 * 8 6 5 10 10 C 1.50708 * 109.47258 * 81.82745 * 8 6 5 11 11 H 1.07998 * 120.00134 * 54.37162 * 10 8 6 12 12 C 1.37875 * 119.99747 * 234.37705 * 10 8 6 13 13 N 1.31514 * 119.99970 * 172.37160 * 12 10 8 14 14 Si 1.86806 * 120.00055 * 352.37669 * 12 10 8 15 15 H 1.48500 * 109.47129 * 83.60214 * 14 12 10 16 16 H 1.48502 * 109.46965 * 203.60023 * 14 12 10 17 17 H 1.48494 * 109.47075 * 323.59826 * 14 12 10 18 18 C 1.50703 * 109.46898 * 201.82216 * 8 6 5 19 19 C 1.38235 * 120.00044 * 292.61713 * 18 8 6 20 20 C 1.38238 * 120.00186 * 179.80780 * 19 18 8 21 21 C 1.38241 * 119.99683 * 0.39946 * 20 19 18 22 22 C 1.38236 * 119.99831 * 359.85675 * 21 20 19 23 23 C 1.38233 * 120.00026 * 112.89143 * 18 8 6 24 24 H 1.09004 * 109.47021 * 60.00569 * 1 2 3 25 25 H 1.08997 * 109.47122 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47385 * 300.00375 * 1 2 3 27 27 H 1.08995 * 109.47681 * 240.00052 * 2 1 3 28 28 H 1.09004 * 109.47021 * 119.99431 * 2 1 3 29 29 H 1.08998 * 109.47353 * 59.99606 * 3 2 1 30 30 H 1.08998 * 109.47405 * 299.99829 * 3 2 1 31 31 H 0.97002 * 120.00527 * 0.02562 * 5 4 3 32 32 H 0.96999 * 120.00157 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.00193 * 359.97438 * 19 18 8 34 34 H 1.07996 * 120.00340 * 180.22773 * 20 19 18 35 35 H 1.07995 * 119.99644 * 179.83386 * 21 20 19 36 36 H 1.07998 * 119.99936 * 179.97438 * 22 21 20 37 37 H 1.07999 * 119.99773 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 7 4.0448 2.7361 0.0001 6 6 5.3852 2.8770 0.0000 7 8 6.0981 1.8959 0.0009 8 6 5.9981 4.2538 0.0001 9 1 5.4079 4.9144 -0.6350 10 6 6.0179 4.7949 1.4065 11 1 6.4800 4.2240 2.1983 12 6 5.4460 6.0187 1.6824 13 7 5.3286 6.4238 2.9281 14 14 4.8377 7.1013 0.2868 15 1 3.4702 6.6779 -0.1081 16 1 4.8075 8.5166 0.7354 17 1 5.7518 6.9700 -0.8760 18 6 7.4074 4.1763 -0.5282 19 6 8.3827 3.5192 0.1984 20 6 9.6745 3.4446 -0.2880 21 6 9.9929 4.0343 -1.4971 22 6 9.0187 4.6960 -2.2211 23 6 7.7261 4.7672 -1.7365 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 3.4747 3.5209 -0.0003 32 1 4.9259 7.2847 3.1222 33 1 8.1348 3.0617 1.1448 34 1 10.4356 2.9281 0.2779 35 1 11.0027 3.9784 -1.8758 36 1 9.2675 5.1571 -3.1655 37 1 6.9650 5.2840 -2.3022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001639014566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:46 Heat of formation + Delta-G solvation = -20.542940 kcal Electronic energy + Delta-G solvation = -19543.340993 eV Core-core repulsion = 16480.369462 eV Total energy + Delta-G solvation = -3062.971531 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.23016 -38.01284 -36.85635 -33.83001 -33.67461 -31.67362 -30.90944 -30.14828 -27.72778 -25.91829 -23.63740 -21.87692 -21.74721 -21.20496 -19.37718 -17.77152 -17.14931 -16.18926 -16.02387 -15.93982 -14.73220 -14.54643 -14.34392 -13.97570 -13.80513 -13.19785 -13.03072 -12.89505 -12.65548 -12.44028 -12.20417 -12.05526 -11.86092 -11.37465 -11.21658 -11.16014 -11.11378 -10.53167 -10.46077 -10.20250 -10.07333 -9.59990 -9.10234 -8.76427 -8.24032 -8.14974 -7.87040 -6.38523 -4.41164 2.06197 2.17892 2.57661 3.03059 3.17735 3.18993 3.63455 4.12430 4.55972 4.77369 4.84724 4.92087 4.96572 5.28541 5.37932 5.50940 5.54175 5.56004 5.59068 5.68435 5.82243 5.88912 5.97518 5.99573 6.08727 6.11861 6.29811 6.38189 6.69700 6.83517 7.14399 7.17987 7.24307 7.44642 7.55129 7.76434 8.00714 8.20766 8.67500 9.14592 9.17748 10.72554 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.006610 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.513433 B = 4235.303750 C = 5381.959072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.032 3.968 4 O -0.159 6.159 5 N -0.599 5.599 6 C 0.540 3.460 7 O -0.541 6.541 8 C 0.048 3.952 9 H 0.062 0.938 10 C -0.509 4.509 11 H 0.087 0.913 12 C 0.083 3.917 13 N -0.875 5.875 14 Si 0.865 3.135 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.257 1.257 18 C -0.034 4.034 19 C -0.068 4.068 20 C -0.131 4.131 21 C -0.139 4.139 22 C -0.131 4.131 23 C -0.131 4.131 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.404 0.596 32 H 0.271 0.729 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 -4.499 -8.003 10.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.046 4.046 4 O -0.161 6.161 5 N -0.302 5.302 6 C 0.330 3.670 7 O -0.416 6.416 8 C 0.026 3.974 9 H 0.080 0.920 10 C -0.546 4.546 11 H 0.105 0.895 12 C -0.123 4.123 13 N -0.510 5.510 14 Si 0.690 3.310 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.182 1.182 18 C -0.035 4.035 19 C -0.086 4.086 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.149 4.149 23 C -0.149 4.149 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.243 0.757 32 H 0.081 0.919 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.268 -5.241 -7.852 10.360 hybrid contribution -1.022 1.189 -0.492 1.643 sum -5.290 -4.052 -8.344 10.678 Atomic orbital electron populations 1.21688 0.94445 1.02209 1.02154 1.21395 0.95780 0.94748 1.03710 1.22961 0.81893 0.98763 1.01007 1.90516 1.18814 1.09513 1.97297 1.47946 1.05817 0.96934 1.79505 1.22011 0.78607 0.93059 0.73322 1.90593 1.60144 1.40779 1.50080 1.18229 0.90220 0.89204 0.99743 0.92010 1.20576 1.39095 1.04755 0.90220 0.89489 1.25063 0.94390 0.97255 0.95558 1.69865 1.42093 1.21033 1.18038 0.87025 0.79717 0.80841 0.83374 1.19696 1.20652 1.18174 1.19860 0.96116 0.95027 0.92470 1.20952 0.91794 0.96443 0.99385 1.21064 0.96638 1.00744 0.96451 1.20904 0.98553 1.00315 0.95992 1.20881 0.93491 1.00913 0.99651 1.20992 0.96539 1.01330 0.96029 0.92497 0.91942 0.92349 0.90928 0.90758 0.92289 0.92690 0.75676 0.91901 0.85983 0.86960 0.87237 0.87144 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.12 -1.32 6.30 -26.73 -0.17 -1.49 16 3 C 0.03 0.43 6.23 37.16 0.23 0.66 16 4 O -0.16 -3.05 11.11 -29.66 -0.33 -3.38 16 5 N -0.60 -12.11 6.39 31.22 0.20 -11.91 16 6 C 0.54 12.59 7.08 -10.98 -0.08 12.51 16 7 O -0.54 -14.07 15.61 -12.63 -0.20 -14.27 16 8 C 0.05 1.11 2.20 -94.07 -0.21 0.90 16 9 H 0.06 1.32 4.73 -51.93 -0.25 1.07 16 10 C -0.51 -13.28 8.24 -34.44 -0.28 -13.56 16 11 H 0.09 2.54 7.72 -52.49 -0.40 2.13 16 12 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.88 -24.46 13.96 55.43 0.77 -23.69 16 14 Si 0.86 18.89 26.84 -169.99 -4.56 14.33 16 15 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.26 -5.42 6.96 56.52 0.39 -5.03 16 18 C -0.03 -0.75 4.52 -104.62 -0.47 -1.22 16 19 C -0.07 -1.48 8.04 -39.58 -0.32 -1.80 16 20 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 21 C -0.14 -2.38 10.05 -39.58 -0.40 -2.77 16 22 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 23 C -0.13 -2.58 9.67 -39.58 -0.38 -2.96 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.40 7.13 8.54 -40.82 -0.35 6.78 16 32 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.12 2.82 7.46 -52.49 -0.39 2.43 16 34 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 37 H 0.11 1.99 7.96 -52.49 -0.42 1.57 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -31.19 318.77 -7.09 -38.29 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -5.18 Total: 9.92 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -2.60 Total: -14.09 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.97 Total: -35.60 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -0.53 Total: -17.65 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -4.56 Total: 14.33 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.19 -7.09 -38.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639014566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.744 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds