Wall clock time and date at job start Mon Mar 30 2020 00:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47009 * 2 1 4 4 O 1.42904 * 109.47362 * 179.97438 * 3 2 1 5 5 N 1.41592 * 114.00116 * 179.97438 * 4 3 2 6 6 C 1.34778 * 119.99853 * 180.02562 * 5 4 3 7 7 O 1.21275 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99645 * 180.02562 * 6 5 4 9 9 H 1.08993 * 109.47926 * 321.82455 * 8 6 5 10 10 C 1.50708 * 109.47258 * 81.82745 * 8 6 5 11 11 H 1.07998 * 120.00134 * 54.37162 * 10 8 6 12 12 C 1.37875 * 119.99747 * 234.37705 * 10 8 6 13 13 N 1.31514 * 119.99970 * 172.37160 * 12 10 8 14 14 Si 1.86806 * 120.00055 * 352.37669 * 12 10 8 15 15 H 1.48500 * 109.47129 * 83.60214 * 14 12 10 16 16 H 1.48502 * 109.46965 * 203.60023 * 14 12 10 17 17 H 1.48494 * 109.47075 * 323.59826 * 14 12 10 18 18 C 1.50703 * 109.46898 * 201.82216 * 8 6 5 19 19 C 1.38235 * 120.00044 * 292.61713 * 18 8 6 20 20 C 1.38238 * 120.00186 * 179.80780 * 19 18 8 21 21 C 1.38241 * 119.99683 * 0.39946 * 20 19 18 22 22 C 1.38236 * 119.99831 * 359.85675 * 21 20 19 23 23 C 1.38233 * 120.00026 * 112.89143 * 18 8 6 24 24 H 1.09004 * 109.47021 * 60.00569 * 1 2 3 25 25 H 1.08997 * 109.47122 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47385 * 300.00375 * 1 2 3 27 27 H 1.08995 * 109.47681 * 240.00052 * 2 1 3 28 28 H 1.09004 * 109.47021 * 119.99431 * 2 1 3 29 29 H 1.08998 * 109.47353 * 59.99606 * 3 2 1 30 30 H 1.08998 * 109.47405 * 299.99829 * 3 2 1 31 31 H 0.97002 * 120.00527 * 0.02562 * 5 4 3 32 32 H 0.96999 * 120.00157 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.00193 * 359.97438 * 19 18 8 34 34 H 1.07996 * 120.00340 * 180.22773 * 20 19 18 35 35 H 1.07995 * 119.99644 * 179.83386 * 21 20 19 36 36 H 1.07998 * 119.99936 * 179.97438 * 22 21 20 37 37 H 1.07999 * 119.99773 * 359.97438 * 23 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 0.0006 5 7 4.0448 2.7361 0.0001 6 6 5.3852 2.8770 0.0000 7 8 6.0981 1.8959 0.0009 8 6 5.9981 4.2538 0.0001 9 1 5.4079 4.9144 -0.6350 10 6 6.0179 4.7949 1.4065 11 1 6.4800 4.2240 2.1983 12 6 5.4460 6.0187 1.6824 13 7 5.3286 6.4238 2.9281 14 14 4.8377 7.1013 0.2868 15 1 3.4702 6.6779 -0.1081 16 1 4.8075 8.5166 0.7354 17 1 5.7518 6.9700 -0.8760 18 6 7.4074 4.1763 -0.5282 19 6 8.3827 3.5192 0.1984 20 6 9.6745 3.4446 -0.2880 21 6 9.9929 4.0343 -1.4971 22 6 9.0187 4.6960 -2.2211 23 6 7.7261 4.7672 -1.7365 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9564 -0.8900 31 1 3.4747 3.5209 -0.0003 32 1 4.9259 7.2847 3.1222 33 1 8.1348 3.0617 1.1448 34 1 10.4356 2.9281 0.2779 35 1 11.0027 3.9784 -1.8758 36 1 9.2675 5.1571 -3.1655 37 1 6.9650 5.2840 -2.3022 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001639014566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:45 Heat of formation + Delta-G solvation = -39.745772 kcal Electronic energy + Delta-G solvation = -19544.173690 eV Core-core repulsion = 16480.369462 eV Total energy + Delta-G solvation = -3063.804229 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92023 -39.52520 -38.35023 -35.56460 -34.95165 -33.50715 -32.41252 -31.61891 -29.39692 -26.98951 -25.50211 -23.37665 -22.98354 -22.52555 -21.04518 -19.39088 -18.99458 -17.97801 -17.47833 -17.10642 -16.45229 -16.01980 -15.83308 -15.41668 -15.21534 -14.81612 -14.56563 -14.41454 -14.12370 -13.76628 -13.57786 -13.40992 -13.02593 -12.92890 -12.74127 -12.39266 -12.13939 -12.07475 -11.91608 -11.72634 -11.59683 -11.46750 -10.96047 -10.68168 -9.86850 -9.63073 -9.40603 -8.38942 -6.49186 0.56778 0.69163 1.08284 1.32629 1.42084 1.50140 1.80459 2.28659 2.93461 3.13281 3.57619 3.90987 3.93305 4.03315 4.14142 4.21113 4.29103 4.34716 4.42106 4.43084 4.52693 4.53710 4.79640 4.82287 4.89463 5.07318 5.14343 5.16657 5.31339 5.32665 5.34777 5.70073 5.75183 5.88718 5.93533 6.15311 6.29362 6.45082 6.55123 7.14350 7.41085 8.76260 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.015226 B = 0.006610 C = 0.005201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.513433 B = 4235.303750 C = 5381.959072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.021 3.979 4 O -0.183 6.183 5 N -0.590 5.590 6 C 0.536 3.464 7 O -0.578 6.578 8 C 0.055 3.945 9 H 0.082 0.918 10 C -0.513 4.513 11 H 0.031 0.969 12 C 0.031 3.969 13 N -0.927 5.927 14 Si 0.927 3.073 15 H -0.239 1.239 16 H -0.283 1.283 17 H -0.238 1.238 18 C -0.067 4.067 19 C -0.101 4.101 20 C -0.137 4.137 21 C -0.131 4.131 22 C -0.124 4.124 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.416 0.584 32 H 0.274 0.726 33 H 0.085 0.915 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.406 -3.569 -11.381 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.055 4.055 4 O -0.187 6.187 5 N -0.293 5.293 6 C 0.325 3.675 7 O -0.456 6.456 8 C 0.033 3.967 9 H 0.100 0.900 10 C -0.551 4.551 11 H 0.049 0.951 12 C -0.169 4.169 13 N -0.564 5.564 14 Si 0.748 3.252 15 H -0.163 1.163 16 H -0.209 1.209 17 H -0.162 1.162 18 C -0.068 4.068 19 C -0.119 4.119 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.142 4.142 23 C -0.159 4.159 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.258 0.742 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.878 -4.318 -11.237 12.989 hybrid contribution -0.818 0.777 0.611 1.283 sum -5.696 -3.541 -10.626 12.566 Atomic orbital electron populations 1.21669 0.91914 1.03427 1.02842 1.21454 0.97736 0.92882 1.03286 1.23380 0.79009 1.00841 1.02302 1.90510 1.22167 1.08527 1.97447 1.47655 1.05438 0.98259 1.77918 1.22027 0.79456 0.92869 0.73115 1.90556 1.61326 1.41854 1.51857 1.18135 0.91631 0.89079 0.97904 0.89967 1.20471 1.38862 1.04838 0.90886 0.95085 1.25957 0.94239 0.98386 0.98362 1.70018 1.43784 1.21807 1.20797 0.86017 0.81043 0.78049 0.80079 1.16289 1.20928 1.16155 1.19933 0.95433 0.97062 0.94336 1.20876 0.93938 0.98284 0.98832 1.21354 0.95603 1.00868 0.97640 1.21396 1.00572 0.98320 0.94589 1.21393 0.92279 0.99642 1.00843 1.21293 0.98453 1.01075 0.95107 0.91411 0.90503 0.92049 0.90923 0.91730 0.91786 0.90466 0.74218 0.91662 0.89671 0.84949 0.83032 0.82892 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.91 71.98 0.71 -1.38 16 2 C -0.11 -2.45 6.30 30.59 0.19 -2.26 16 3 C 0.02 0.56 6.23 71.98 0.45 1.01 16 4 O -0.18 -7.05 11.11 -21.37 -0.24 -7.28 16 5 N -0.59 -24.04 6.39 -173.54 -1.11 -25.15 16 6 C 0.54 25.75 7.08 87.66 0.62 26.37 16 7 O -0.58 -31.53 15.61 14.38 0.22 -31.30 16 8 C 0.05 2.55 2.20 -13.03 -0.03 2.52 16 9 H 0.08 3.39 4.73 -2.39 -0.01 3.38 16 10 C -0.51 -28.20 8.24 25.60 0.21 -27.99 16 11 H 0.03 1.99 7.72 -2.91 -0.02 1.96 16 12 C 0.03 1.68 5.47 84.65 0.46 2.14 16 13 N -0.93 -53.93 13.96 21.45 0.30 -53.63 16 14 Si 0.93 37.86 26.84 68.60 1.84 39.71 16 15 H -0.24 -8.53 7.11 99.48 0.71 -7.82 16 16 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 17 H -0.24 -8.97 6.96 99.48 0.69 -8.27 16 18 C -0.07 -3.00 4.52 -19.87 -0.09 -3.09 16 19 C -0.10 -4.62 8.04 22.27 0.18 -4.44 16 20 C -0.14 -5.03 10.05 22.27 0.22 -4.81 16 21 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 22 C -0.12 -3.80 10.05 22.27 0.22 -3.58 16 23 C -0.14 -5.23 9.67 22.27 0.22 -5.02 16 24 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.42 14.39 8.54 -92.71 -0.79 13.60 16 32 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 33 H 0.08 4.38 7.46 -2.91 -0.02 4.36 16 34 H 0.13 4.16 8.06 -2.91 -0.02 4.13 16 35 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 37 H 0.13 4.21 7.96 -2.91 -0.02 4.19 16 Total: -1.00 -72.68 318.77 4.87 -67.81 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: 0.26 Total: 34.17 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 3.60 Total: -24.31 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -0.81 Total: -78.78 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.01 Total: -38.59 kcal Atomic # 14 Polarization: 37.86 SS G_CDS: 1.84 Total: 39.71 kcal Total: -72.68 4.87 -67.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001639014566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.061 kcal (2) G-P(sol) polarization free energy of solvation -72.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds