Wall clock time and date at job start Mon Mar 30 2020 00:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35461 * 117.00090 * 2 1 4 4 N 1.32338 * 119.19404 * 359.97438 * 3 2 1 5 5 C 1.32282 * 120.75563 * 179.97438 * 4 3 2 6 6 C 1.38610 * 119.17529 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.74071 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47163 * 101.08882 * 7 6 5 9 9 C 1.36937 * 119.99445 * 86.46122 * 8 7 6 10 10 H 1.08005 * 120.00132 * 31.85246 * 9 8 7 11 11 C 1.38812 * 119.99930 * 211.84883 * 9 8 7 12 12 N 1.31619 * 119.99715 * 19.64972 * 11 9 8 13 13 Si 1.86799 * 120.00330 * 199.64993 * 11 9 8 14 14 H 1.48500 * 109.46989 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47185 * 119.99755 * 13 11 9 16 16 H 1.48499 * 109.47275 * 240.00210 * 13 11 9 17 17 C 1.46497 * 120.00203 * 266.45749 * 8 7 6 18 18 C 1.52998 * 117.49681 * 3.05955 * 17 8 7 19 19 C 1.53000 * 117.50010 * 294.39927 * 17 8 7 20 20 C 1.38571 * 118.52336 * 359.97438 * 6 5 4 21 21 C 1.50702 * 120.41342 * 179.72876 * 20 6 5 22 22 N 1.32296 * 119.19476 * 179.97438 * 3 2 1 23 23 H 1.09007 * 109.47154 * 60.00196 * 1 2 3 24 24 H 1.08997 * 109.47149 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47001 * 300.00600 * 1 2 3 26 26 H 1.08000 * 120.41119 * 179.97438 * 5 4 3 27 27 H 1.08998 * 109.46846 * 221.09420 * 7 6 5 28 28 H 1.09003 * 109.46858 * 341.08948 * 7 6 5 29 29 H 0.97002 * 120.00178 * 184.95924 * 12 11 9 30 30 H 1.08993 * 115.54700 * 148.72396 * 17 8 7 31 31 H 1.08993 * 117.50343 * 359.97438 * 18 17 8 32 32 H 1.09004 * 117.49529 * 145.02161 * 18 17 8 33 33 H 1.08998 * 117.49882 * 214.97574 * 19 17 8 34 34 H 1.08997 * 117.50142 * 359.97438 * 19 17 8 35 35 H 1.08993 * 109.47582 * 88.05668 * 21 20 6 36 36 H 1.09003 * 109.47060 * 208.05883 * 21 20 6 37 37 H 1.08998 * 109.46693 * 328.05435 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0440 1.2070 0.0000 4 7 1.3077 2.3066 -0.0005 5 6 1.8760 3.5012 0.0000 6 6 3.2591 3.5915 0.0005 7 6 3.9434 4.9342 0.0017 8 7 4.4014 5.2477 1.3575 9 6 5.6232 4.8033 1.7872 10 1 6.4370 4.6976 1.0850 11 6 5.8160 4.4888 3.1254 12 7 4.7803 4.2400 3.8987 13 14 7.5451 4.4184 3.8288 14 1 8.5271 4.7351 2.7608 15 1 7.6727 5.4081 4.9286 16 1 7.8100 3.0556 4.3558 17 6 3.5522 6.0367 2.2533 18 6 2.1693 6.4428 1.7401 19 6 3.2773 7.4914 1.8669 20 6 3.9987 2.4197 0.0010 21 6 5.5050 2.4682 -0.0045 22 7 3.3660 1.2576 0.0005 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.2697 4.3949 -0.0009 27 1 4.7986 4.9067 -0.6736 28 1 3.2422 5.6996 -0.3311 29 1 4.9089 4.0911 4.8486 30 1 3.6478 5.8073 3.3146 31 1 1.8914 6.1234 0.7357 32 1 1.3551 6.4810 2.4639 33 1 3.1915 8.2189 2.6740 34 1 3.7285 7.8615 0.9464 35 1 5.8707 2.5175 1.0210 36 1 5.8956 1.5721 -0.4869 37 1 5.8380 3.3500 -0.5519 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332024915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:18 Heat of formation + Delta-G solvation = 68.848516 kcal Electronic energy + Delta-G solvation = -20471.661318 eV Core-core repulsion = 17444.858842 eV Total energy + Delta-G solvation = -3026.802476 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.69701 -38.19491 -37.04840 -33.99248 -33.32542 -32.40983 -30.15038 -28.33176 -27.22140 -25.50541 -23.71756 -22.77648 -21.53903 -21.41031 -19.45472 -18.04192 -17.48961 -16.88937 -15.98248 -15.17881 -14.80620 -14.55539 -14.19805 -14.03325 -13.67934 -13.46526 -12.98503 -12.60741 -12.26950 -11.82952 -11.77233 -11.70712 -11.30865 -11.08833 -10.96159 -10.84915 -10.81399 -10.50938 -10.21123 -10.12858 -9.83171 -9.53499 -9.34996 -8.57996 -8.55500 -8.16588 -6.77527 -5.89404 -3.48937 1.66854 1.68901 3.01629 3.29188 3.38860 3.39925 4.26820 4.42009 4.57336 4.95565 5.11379 5.12613 5.24979 5.29165 5.38709 5.42217 5.55342 5.66334 5.78731 5.99499 6.04909 6.06804 6.19676 6.23527 6.27219 6.36120 6.53954 6.59776 6.68857 6.71733 6.91667 7.00208 7.34297 7.61437 7.63750 7.70633 8.25005 8.67952 9.00613 9.61126 10.14104 11.06863 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.019022 B = 0.007500 C = 0.006256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1471.597774 B = 3732.502558 C = 4474.536213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.299 6.299 3 C 0.477 3.523 4 N -0.578 5.578 5 C 0.175 3.825 6 C -0.214 4.214 7 C 0.184 3.816 8 N -0.544 5.544 9 C -0.256 4.256 10 H 0.075 0.925 11 C 0.010 3.990 12 N -0.883 5.883 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.289 1.289 17 C 0.157 3.843 18 C -0.224 4.224 19 C -0.232 4.232 20 C 0.236 3.764 21 C -0.100 4.100 22 N -0.531 5.531 23 H 0.057 0.943 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.159 0.841 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.256 0.744 30 H 0.142 0.858 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.110 0.890 36 H 0.061 0.939 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 -0.550 -7.119 8.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.202 6.202 3 C 0.173 3.827 4 N -0.307 5.307 5 C 0.011 3.989 6 C -0.222 4.222 7 C 0.057 3.943 8 N -0.259 5.259 9 C -0.385 4.385 10 H 0.093 0.907 11 C -0.191 4.191 12 N -0.525 5.525 13 Si 0.726 3.274 14 H -0.198 1.198 15 H -0.213 1.213 16 H -0.216 1.216 17 C 0.049 3.951 18 C -0.262 4.262 19 C -0.272 4.272 20 C 0.090 3.910 21 C -0.157 4.157 22 N -0.257 5.257 23 H 0.076 0.924 24 H 0.114 0.886 25 H 0.077 0.923 26 H 0.176 0.824 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.159 0.841 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.080 0.920 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.355 -1.872 -6.961 8.980 hybrid contribution 0.596 0.877 0.670 1.254 sum -4.759 -0.995 -6.291 7.951 Atomic orbital electron populations 1.22830 0.76758 1.02604 1.02475 1.86011 1.22519 1.23509 1.88123 1.20476 0.86234 0.84396 0.91579 1.67875 1.41524 0.99273 1.22049 1.22638 0.92326 0.93600 0.90377 1.22392 0.95359 1.00412 1.03992 1.19878 0.96377 0.88648 0.89437 1.43620 1.16879 1.56029 1.09422 1.19210 0.86527 1.39261 0.93540 0.90695 1.25116 0.97194 0.98427 0.98314 1.69983 1.29132 1.48140 1.05267 0.86316 0.84353 0.77428 0.79263 1.19824 1.21346 1.21558 1.21683 0.88188 0.87480 0.97792 1.23257 0.94126 1.07300 1.01516 1.23423 1.05092 0.96149 1.02577 1.21324 0.97368 0.85795 0.86512 1.20977 0.87372 1.01827 1.05536 1.67319 1.07442 1.30665 1.20300 0.92436 0.88628 0.92273 0.82370 0.92095 0.92599 0.93401 0.84098 0.90143 0.90258 0.90585 0.90315 0.87201 0.92007 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.65 10.36 101.05 1.05 1.70 16 2 O -0.30 -5.50 10.55 -18.08 -0.19 -5.69 16 3 C 0.48 9.81 8.49 -91.25 -0.77 9.04 16 4 N -0.58 -11.20 9.23 -14.73 -0.14 -11.34 16 5 C 0.17 3.25 10.78 -17.22 -0.19 3.07 16 6 C -0.21 -4.19 5.48 -104.36 -0.57 -4.76 16 7 C 0.18 3.45 4.96 -5.19 -0.03 3.43 16 8 N -0.54 -12.08 2.79 -167.03 -0.47 -12.55 16 9 C -0.26 -6.13 6.75 -15.06 -0.10 -6.23 16 10 H 0.08 1.73 7.05 -52.48 -0.37 1.36 16 11 C 0.01 0.25 5.10 -17.43 -0.09 0.16 16 12 N -0.88 -23.89 11.04 55.49 0.61 -23.27 16 13 Si 0.90 20.17 29.60 -169.99 -5.03 15.14 16 14 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.16 3.47 5.87 -67.93 -0.40 3.07 16 18 C -0.22 -4.11 9.71 -26.69 -0.26 -4.37 16 19 C -0.23 -4.34 10.35 -26.69 -0.28 -4.62 16 20 C 0.24 4.86 6.82 -82.26 -0.56 4.30 16 21 C -0.10 -1.85 8.27 36.01 0.30 -1.55 16 22 N -0.53 -11.51 10.40 -10.95 -0.11 -11.63 16 23 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 24 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 26 H 0.16 2.53 6.58 -52.49 -0.35 2.18 16 27 H 0.06 1.08 6.52 -51.93 -0.34 0.74 16 28 H 0.06 0.95 5.89 -51.93 -0.31 0.64 16 29 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 30 H 0.14 3.60 5.62 -51.93 -0.29 3.31 16 31 H 0.08 1.36 4.48 -51.93 -0.23 1.13 16 32 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.11 2.31 6.66 -51.93 -0.35 1.96 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.36 5.82 -51.93 -0.30 1.06 16 LS Contribution 301.70 15.07 4.55 4.55 Total: -1.00 -28.77 301.70 -7.30 -36.07 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -4.62 Total: 5.50 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -1.90 Total: 3.23 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: -0.10 Total: -58.79 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.19 Total: -5.69 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.77 -7.30 -36.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332024915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.918 kcal (2) G-P(sol) polarization free energy of solvation -28.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds