Wall clock time and date at job start Sun Mar 29 2020 23:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47223 * 291.83907 * 3 2 1 5 5 N 1.46904 * 109.47307 * 176.24321 * 4 3 2 6 6 C 1.46899 * 110.99887 * 301.49936 * 5 4 3 7 7 C 1.50699 * 109.47067 * 294.66136 * 6 5 4 8 8 H 1.08001 * 120.00079 * 3.76791 * 7 6 5 9 9 C 1.37881 * 119.99708 * 183.76582 * 7 6 5 10 10 N 1.31510 * 120.00557 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99677 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47226 * 90.00239 * 11 9 7 13 13 H 1.48500 * 109.47374 * 210.00260 * 11 9 7 14 14 H 1.48497 * 109.47587 * 330.00103 * 11 9 7 15 15 C 1.46897 * 110.99709 * 65.44956 * 5 4 3 16 16 N 1.46502 * 109.47030 * 85.41326 * 15 5 4 17 17 C 1.46184 * 123.95360 * 270.17276 * 16 15 5 18 18 C 1.53736 * 107.15750 * 180.21094 * 17 16 15 19 19 H 1.09004 * 118.02847 * 139.00825 * 18 17 16 20 20 C 1.53010 * 118.48359 * 296.96592 * 18 17 16 21 21 C 1.52978 * 60.38317 * 90.26378 * 20 18 17 22 22 H 1.08998 * 119.08997 * 112.60744 * 21 20 18 23 23 C 1.33824 * 123.95120 * 90.02324 * 16 15 5 24 24 O 1.21285 * 124.57117 * 359.87445 * 23 16 15 25 25 H 1.09004 * 109.46925 * 171.84416 * 3 2 1 26 26 H 1.09001 * 109.47523 * 51.84242 * 3 2 1 27 27 H 1.09003 * 109.46698 * 56.24570 * 4 3 2 28 28 H 1.08996 * 109.47461 * 296.24327 * 4 3 2 29 29 H 1.08997 * 109.47717 * 54.66302 * 6 5 4 30 30 H 1.09001 * 109.47002 * 174.66381 * 6 5 4 31 31 H 0.96998 * 120.00731 * 179.97438 * 10 9 7 32 32 H 1.08998 * 109.47640 * 325.41307 * 15 5 4 33 33 H 1.09002 * 109.47528 * 205.41090 * 15 5 4 34 34 H 1.08999 * 110.09622 * 60.72664 * 17 16 15 35 35 H 1.08992 * 109.85102 * 299.56551 * 17 16 15 36 36 H 1.09000 * 117.46026 * 342.66005 * 20 18 17 37 37 H 1.08998 * 117.46285 * 197.86269 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5357 1.3390 5 7 4.5845 -0.6197 1.3062 6 6 5.0376 -1.4904 0.2132 7 6 4.5884 -2.9043 0.4783 8 1 3.9715 -3.1228 1.3374 9 6 4.9650 -3.9189 -0.3760 10 7 5.7166 -3.6529 -1.4219 11 14 4.4088 -5.6715 -0.0471 12 1 3.1121 -5.9155 -0.7285 13 1 5.4269 -6.6197 -0.5663 14 1 4.2452 -5.8728 1.4151 15 6 5.1859 0.7162 1.1987 16 7 5.3213 1.2998 2.5357 17 6 4.2904 2.1112 3.1805 18 6 4.8338 2.5238 4.5582 19 1 4.6499 3.5434 4.8970 20 6 5.1329 1.4275 5.5828 21 6 6.2303 1.8803 4.6180 22 1 7.0987 2.4075 5.0130 23 6 6.4019 1.1499 3.3107 24 8 7.3886 0.5163 3.0008 25 1 2.9708 1.0181 -0.1458 26 1 2.9716 -0.6341 -0.8081 27 1 2.7014 -1.5273 1.5157 28 1 2.8107 0.1359 2.1404 29 1 4.6109 -1.1441 -0.7281 30 1 6.1254 -1.4603 0.1519 31 1 5.9819 -4.3667 -2.0227 32 1 4.5479 1.3539 0.5869 33 1 6.1697 0.6357 0.7362 34 1 3.3767 1.5292 3.3013 35 1 4.0885 2.9984 2.5805 36 1 4.6882 0.4467 5.4139 37 1 5.2263 1.7270 6.6267 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902024973.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:52:43 Heat of formation + Delta-G solvation = 44.175340 kcal Electronic energy + Delta-G solvation = -19907.622324 eV Core-core repulsion = 16879.749939 eV Total energy + Delta-G solvation = -3027.872385 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.84677 -37.88744 -36.78638 -36.04140 -33.87889 -32.57213 -30.40422 -27.85172 -27.24967 -25.58087 -23.92463 -22.75063 -21.13688 -20.31066 -19.02545 -17.61264 -16.79445 -16.27138 -15.90607 -15.36560 -15.20528 -14.59023 -14.41627 -14.02240 -13.93071 -13.48970 -13.38529 -13.24658 -12.55150 -12.46559 -12.20027 -12.09196 -11.77130 -11.61614 -11.29204 -11.18499 -10.82408 -10.69138 -10.57662 -10.47380 -10.33537 -9.98552 -9.47347 -9.34694 -8.62748 -8.46127 -7.52259 -6.09435 -4.11195 2.63566 2.99702 3.04018 3.14992 3.29735 3.37044 3.41109 3.59851 4.21632 4.29862 4.38867 4.43177 4.67163 4.73955 4.86870 5.12347 5.25701 5.28306 5.33244 5.44478 5.49542 5.53523 5.59461 5.68713 5.73784 5.87758 5.93866 6.15285 6.45534 6.70499 7.03574 7.11945 7.41073 7.66860 7.79618 7.93262 8.01651 8.35046 8.51515 8.94555 9.53735 11.00969 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.015768 B = 0.006429 C = 0.005147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.312522 B = 4353.928372 C = 5439.246577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.224 3.776 3 C -0.076 4.076 4 C 0.073 3.927 5 N -0.539 5.539 6 C 0.192 3.808 7 C -0.510 4.510 8 H 0.063 0.937 9 C 0.059 3.941 10 N -0.895 5.895 11 Si 0.895 3.105 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.282 3.718 16 N -0.603 5.603 17 C 0.127 3.873 18 C -0.168 4.168 19 H 0.132 0.868 20 C -0.120 4.120 21 C -0.202 4.202 22 H 0.135 0.865 23 C 0.545 3.455 24 O -0.519 6.519 25 H 0.097 0.903 26 H 0.128 0.872 27 H 0.092 0.908 28 H 0.061 0.939 29 H 0.002 0.998 30 H 0.040 0.960 31 H 0.263 0.737 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.485 14.115 9.036 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.093 4.093 3 C -0.118 4.118 4 C -0.058 4.058 5 N -0.263 5.263 6 C 0.068 3.932 7 C -0.549 4.549 8 H 0.081 0.919 9 C -0.143 4.143 10 N -0.534 5.534 11 Si 0.723 3.277 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.071 3.929 16 N -0.338 5.338 17 C 0.003 3.997 18 C -0.186 4.186 19 H 0.149 0.851 20 C -0.157 4.157 21 C -0.223 4.223 22 H 0.153 0.847 23 C 0.332 3.668 24 O -0.394 6.394 25 H 0.115 0.885 26 H 0.145 0.855 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.019 0.981 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.372 13.442 9.039 16.546 hybrid contribution -0.052 -0.608 -0.644 0.887 sum -3.424 12.834 8.395 15.714 Atomic orbital electron populations 1.81154 1.13151 1.09759 1.09609 1.29207 0.95199 0.92391 0.92527 1.20267 0.81741 1.04435 1.05330 1.22117 0.89195 1.02290 0.92176 1.62054 1.04707 1.09641 1.49938 1.19865 0.96833 0.90953 0.85575 1.21075 1.32095 0.91540 1.10191 0.91859 1.24937 0.95046 0.99156 0.95114 1.69927 1.36097 1.33034 1.14348 0.86532 0.78228 0.84284 0.78620 1.20749 1.21197 1.19785 1.21920 1.01105 0.89178 0.80697 1.48137 1.16349 1.51251 1.18072 1.21275 0.91812 0.95268 0.91296 1.23366 0.98549 0.99918 0.96769 0.85053 1.22891 0.98181 0.99284 0.95335 1.23093 0.94587 1.06009 0.98620 0.84742 1.19492 0.82861 0.79556 0.84934 1.90743 1.31357 1.40821 1.76507 0.88479 0.85476 0.88946 0.92040 0.98088 0.94177 0.92777 0.92450 0.88693 0.90431 0.90507 0.87989 0.86993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -7.90 18.54 42.15 0.78 -7.11 16 2 C 0.22 3.37 15.43 -20.76 -0.32 3.05 16 3 C -0.08 -1.03 5.11 -29.52 -0.15 -1.18 16 4 C 0.07 1.12 5.05 -3.82 -0.02 1.10 16 5 N -0.54 -9.98 4.81 -239.98 -1.15 -11.14 16 6 C 0.19 4.41 4.37 -4.98 -0.02 4.39 16 7 C -0.51 -13.28 8.60 -34.44 -0.30 -13.58 16 8 H 0.06 1.65 6.91 -52.49 -0.36 1.28 16 9 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 10 N -0.90 -25.33 13.29 55.43 0.74 -24.59 16 11 Si 0.90 21.17 29.54 -169.99 -5.02 16.14 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 C 0.28 4.37 5.60 -63.32 -0.35 4.02 16 16 N -0.60 -8.52 3.13 -177.25 -0.56 -9.08 16 17 C 0.13 1.25 6.94 -3.83 -0.03 1.22 16 18 C -0.17 -1.42 7.19 -89.77 -0.65 -2.06 16 19 H 0.13 0.77 8.14 -51.93 -0.42 0.34 16 20 C -0.12 -1.10 10.11 -26.74 -0.27 -1.37 16 21 C -0.20 -2.31 6.96 -91.31 -0.64 -2.95 16 22 H 0.13 1.36 8.14 -51.93 -0.42 0.93 16 23 C 0.55 8.93 7.83 -11.39 -0.09 8.84 16 24 O -0.52 -11.13 17.51 5.55 0.10 -11.03 16 25 H 0.10 1.03 6.34 -51.93 -0.33 0.70 16 26 H 0.13 1.99 6.07 -51.93 -0.31 1.68 16 27 H 0.09 1.65 6.78 -51.93 -0.35 1.29 16 28 H 0.06 0.81 6.09 -51.93 -0.32 0.49 16 29 H 0.00 0.04 5.91 -51.93 -0.31 -0.27 16 30 H 0.04 1.05 7.81 -51.93 -0.41 0.65 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.06 0.70 5.84 -51.93 -0.30 0.40 16 33 H 0.09 1.68 7.32 -51.93 -0.38 1.30 16 34 H 0.08 0.75 6.38 -51.93 -0.33 0.42 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 311.26 15.07 4.69 4.69 Total: -1.00 -32.52 311.26 -8.00 -40.52 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -4.65 Total: -1.39 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -2.93 Total: 3.00 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.19 Total: -51.93 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.10 Total: -11.03 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.52 -8.00 -40.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902024973.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.698 kcal (2) G-P(sol) polarization free energy of solvation -32.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds