Wall clock time and date at job start Mon Mar 30 2020 00:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47592 * 2 1 4 4 C 1.50701 * 109.46901 * 119.99700 * 2 1 3 5 5 H 1.08002 * 120.00123 * 119.99949 * 4 2 1 6 6 C 1.37885 * 119.99777 * 299.99870 * 4 2 1 7 7 N 1.31504 * 120.00232 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99749 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46870 * 60.00170 * 8 6 4 10 10 H 1.48501 * 109.47174 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47052 * 300.00326 * 8 6 4 12 12 N 1.46495 * 109.47384 * 239.99572 * 2 1 3 13 13 C 1.46500 * 119.99963 * 300.00121 * 12 2 1 14 14 C 1.34780 * 120.00217 * 120.00144 * 12 2 1 15 15 O 1.21566 * 119.99816 * 4.12824 * 14 12 2 16 16 C 1.47713 * 119.99923 * 184.12573 * 14 12 2 17 17 C 1.41502 * 126.51371 * 184.66287 * 16 14 12 18 18 C 1.35363 * 105.50243 * 179.97438 * 17 16 14 19 19 C 1.50698 * 126.38642 * 179.97438 * 18 17 16 20 20 C 1.53005 * 117.49939 * 213.74734 * 19 18 17 21 21 C 1.53006 * 117.49340 * 145.09094 * 19 18 17 22 22 N 1.35036 * 107.22515 * 0.02562 * 18 17 16 23 23 H 0.97007 * 124.88491 * 180.02562 * 22 18 17 24 24 N 1.28469 * 110.23374 * 359.74688 * 22 18 17 25 25 H 1.09002 * 109.47184 * 300.01041 * 1 2 3 26 26 H 1.09004 * 109.46950 * 60.00356 * 1 2 3 27 27 H 1.08994 * 109.47396 * 179.97438 * 1 2 3 28 28 H 0.96994 * 120.00606 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47793 * 264.22530 * 13 12 2 30 30 H 1.09006 * 109.47179 * 144.22018 * 13 12 2 31 31 H 1.09004 * 109.47235 * 24.22713 * 13 12 2 32 32 H 1.07996 * 127.24779 * 359.96164 * 17 16 14 33 33 H 1.08993 * 115.55275 * 359.42558 * 19 18 17 34 34 H 1.08997 * 117.49598 * 0.02562 * 20 19 18 35 35 H 1.09002 * 117.49347 * 145.02217 * 20 19 18 36 36 H 1.09002 * 117.49636 * 214.97778 * 21 19 18 37 37 H 1.08994 * 117.50258 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3211 -1.1201 4.0081 9 1 3.8061 -1.1207 4.0083 10 1 1.8257 -0.4203 5.2206 11 1 1.8256 -2.5200 4.0079 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 6 2.7933 -0.0358 -2.0833 15 8 3.1490 1.1040 -1.8546 16 6 3.2104 -0.7029 -3.3334 17 6 4.0915 -0.1837 -4.3114 18 6 4.1742 -1.1386 -5.2673 19 6 4.9917 -1.0697 -6.5313 20 6 4.4251 -1.7534 -7.7773 21 6 5.6164 -2.3704 -7.0403 22 7 3.3865 -2.1639 -4.8775 23 1 3.2580 -2.9856 -5.3768 24 7 2.8364 -1.8970 -3.7477 25 1 -0.3634 0.5140 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7080 1.1611 3.4843 29 1 2.4656 -2.7355 -1.0621 30 1 1.5233 -2.2607 -2.4956 31 1 0.7409 -2.3273 -0.8982 32 1 4.5924 0.7729 -4.2980 33 1 5.5577 -0.1494 -6.6756 34 1 3.4608 -2.2526 -7.6828 35 1 4.6186 -1.2829 -8.7414 36 1 6.5932 -2.3056 -7.5198 37 1 5.4364 -3.2757 -6.4606 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:34 Heat of formation + Delta-G solvation = 75.636994 kcal Electronic energy + Delta-G solvation = -19618.962887 eV Core-core repulsion = 16592.454781 eV Total energy + Delta-G solvation = -3026.508105 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.59965 -38.67148 -37.41471 -35.22891 -32.84888 -31.60902 -30.60872 -29.02333 -26.00133 -25.14628 -23.96190 -23.29905 -22.81931 -21.00318 -20.34734 -18.04752 -17.84663 -16.44741 -16.18028 -15.63860 -15.46818 -15.19067 -14.29536 -14.17986 -13.93889 -13.40936 -12.87252 -12.49657 -12.37737 -12.21654 -12.03598 -11.71478 -11.43667 -11.35388 -10.99728 -10.86112 -10.75303 -10.66934 -10.19765 -10.12772 -10.04369 -9.17562 -9.13980 -9.03394 -8.74141 -8.35865 -7.45377 -5.99756 -4.07060 1.80164 2.24105 2.89046 3.33778 3.38000 3.40684 3.56486 3.92465 4.10033 4.24203 4.39185 4.47270 4.55491 4.71442 4.91480 5.17856 5.31021 5.38442 5.45949 5.62065 5.65544 5.77821 5.98770 6.16942 6.34015 6.50053 6.63911 6.85400 6.91815 7.08582 7.14186 7.55226 7.60680 7.79514 8.02008 8.11148 8.27854 8.62851 8.91109 9.13269 9.58872 11.05652 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.039833 B = 0.004207 C = 0.004142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.771615 B = 6654.172382 C = 6759.088814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.523 4.523 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.576 5.576 13 C 0.078 3.922 14 C 0.583 3.417 15 O -0.545 6.545 16 C 0.011 3.989 17 C -0.173 4.173 18 C 0.038 3.962 19 C -0.082 4.082 20 C -0.176 4.176 21 C -0.175 4.175 22 N -0.392 5.392 23 H 0.437 0.563 24 N -0.255 5.255 25 H 0.094 0.906 26 H 0.012 0.988 27 H 0.031 0.969 28 H 0.263 0.737 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.161 0.839 33 H 0.132 0.868 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.354 -7.657 -19.125 21.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.561 4.561 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.306 5.306 13 C -0.066 4.066 14 C 0.367 3.633 15 O -0.422 6.422 16 C -0.150 4.150 17 C -0.201 4.201 18 C -0.087 4.087 19 C -0.101 4.101 20 C -0.213 4.213 21 C -0.213 4.213 22 N -0.105 5.105 23 H 0.281 0.719 24 N -0.090 5.090 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.179 0.821 33 H 0.150 0.850 34 H 0.112 0.888 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.758 -7.794 -18.468 20.602 hybrid contribution 0.728 -0.426 0.416 0.941 sum 5.486 -8.221 -18.052 20.580 Atomic orbital electron populations 1.22102 0.98084 0.99468 1.00861 1.18998 0.90909 0.94540 0.79864 0.91781 1.21294 1.31695 1.12913 0.90249 0.92316 1.24883 0.95001 0.95000 0.98894 1.69863 1.36448 1.22677 1.23788 0.86549 0.79251 0.79557 0.81975 1.20252 1.21198 1.20280 1.48114 1.47697 1.12049 1.22755 1.21969 1.00450 0.82151 1.02078 1.16996 0.79518 0.85357 0.81436 1.90738 1.56640 1.17884 1.76966 1.22404 1.01679 0.92188 0.98751 1.21447 1.03589 1.01320 0.93695 1.20372 0.99605 0.90721 0.98020 1.20500 1.01324 0.98671 0.89649 1.23092 0.98061 1.03873 0.96274 1.23096 0.98325 0.96287 1.03562 1.43418 1.34117 1.16619 1.16364 0.71942 1.73819 1.19597 1.17374 0.98235 0.88716 0.96922 0.95029 0.92680 0.93980 0.89628 0.91317 0.82146 0.85043 0.88846 0.87704 0.87702 0.88810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 8.96 37.16 0.33 -3.33 16 2 C 0.26 6.91 2.63 -69.09 -0.18 6.73 16 3 H 0.06 1.96 6.91 -51.93 -0.36 1.61 16 4 C -0.52 -14.77 8.37 -34.44 -0.29 -15.06 16 5 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 6 C 0.06 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.76 11.32 55.43 0.63 -25.13 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 12 N -0.58 -13.56 2.75 -176.43 -0.49 -14.04 16 13 C 0.08 1.52 9.03 59.85 0.54 2.06 16 14 C 0.58 13.55 7.68 -12.39 -0.10 13.45 16 15 O -0.55 -14.40 16.26 5.31 0.09 -14.31 16 16 C 0.01 0.21 6.86 -82.77 -0.57 -0.36 16 17 C -0.17 -2.68 10.73 -39.36 -0.42 -3.11 16 18 C 0.04 0.45 6.64 -82.21 -0.55 -0.09 16 19 C -0.08 -0.66 6.26 -91.77 -0.57 -1.23 16 20 C -0.18 -1.05 10.22 -26.69 -0.27 -1.33 16 21 C -0.18 -1.07 10.23 -26.69 -0.27 -1.34 16 22 N -0.39 -4.58 6.80 33.50 0.23 -4.35 16 23 H 0.44 3.42 8.96 -190.43 -1.71 1.71 16 24 N -0.26 -4.03 8.66 33.42 0.29 -3.75 16 25 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 26 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.03 0.73 6.67 -51.93 -0.35 0.38 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.50 5.02 -51.93 -0.26 1.24 16 31 H 0.07 1.33 6.44 -51.93 -0.33 1.00 16 32 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 33 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 310.64 15.07 4.68 4.68 Total: -1.00 -33.25 310.64 -8.28 -41.53 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -6.24 Total: 0.62 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -2.44 Total: -1.88 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.66 Total: -47.28 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: 0.09 Total: -14.31 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.25 -8.28 -41.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.167 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds