Wall clock time and date at job start Mon Mar 30 2020 00:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46905 * 2 1 4 4 N 1.46496 * 109.46846 * 120.00160 * 2 1 3 5 5 C 1.34779 * 119.99707 * 154.99835 * 4 2 1 6 6 O 1.21280 * 120.00041 * 0.02562 * 5 4 2 7 7 C 1.50706 * 119.99836 * 179.97438 * 5 4 2 8 8 N 1.46496 * 109.46763 * 180.02562 * 7 5 4 9 9 C 1.38825 * 119.99721 * 180.02562 * 8 7 5 10 10 C 1.39797 * 119.58412 * 359.97438 * 9 8 7 11 11 C 1.38590 * 119.48864 * 180.02562 * 10 9 8 12 12 C 1.38385 * 118.68645 * 0.02562 * 11 10 9 13 13 C 1.40563 * 119.14613 * 359.97438 * 12 11 10 14 14 C 1.41313 * 119.78156 * 180.02562 * 13 12 11 15 15 H 1.07997 * 120.00203 * 6.43306 * 14 13 12 16 16 C 1.40023 * 119.99737 * 186.43292 * 14 13 12 17 17 N 1.30750 * 120.00001 * 176.32459 * 16 14 13 18 18 Si 1.86806 * 119.99972 * 356.05345 * 16 14 13 19 19 H 1.48501 * 109.46911 * 180.27289 * 18 16 14 20 20 H 1.48498 * 109.46717 * 300.27163 * 18 16 14 21 21 H 1.48497 * 109.47277 * 60.27102 * 18 16 14 22 22 N 1.31958 * 119.58381 * 180.30058 * 9 8 7 23 23 H 1.08994 * 109.47183 * 300.00254 * 1 2 3 24 24 H 1.09002 * 109.46833 * 60.00185 * 1 2 3 25 25 H 1.08997 * 109.46793 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47188 * 240.00354 * 2 1 3 27 27 H 1.09003 * 109.46909 * 60.00183 * 3 2 1 28 28 H 1.09003 * 109.46759 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47700 * 300.00145 * 3 2 1 30 30 H 0.96994 * 120.00183 * 334.99955 * 4 2 1 31 31 H 1.08998 * 109.47100 * 60.00108 * 7 5 4 32 32 H 1.09001 * 109.47135 * 300.00270 * 7 5 4 33 33 H 0.97000 * 120.00758 * 0.02562 * 8 7 5 34 34 H 1.08002 * 120.25638 * 0.04867 * 10 9 8 35 35 H 1.08007 * 120.65934 * 179.97438 * 11 10 9 36 36 H 1.08001 * 120.42947 * 180.02562 * 12 11 10 37 37 H 0.96993 * 119.99763 * 354.92649 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9358 -1.1987 0.2026 7 6 3.7428 -1.9692 2.4250 8 7 5.0860 -2.4959 2.1706 9 6 5.7577 -3.1938 3.1650 10 6 5.1444 -3.3886 4.4061 11 6 5.8170 -4.0851 5.3976 12 6 7.0846 -4.5694 5.1260 13 6 7.6476 -4.3411 3.8585 14 6 8.9409 -4.8300 3.5665 15 1 9.4513 -5.4645 4.2760 16 6 9.5607 -4.4919 2.3573 17 7 10.7847 -4.8844 2.1179 18 14 8.6361 -3.4864 1.0830 19 1 9.5045 -3.2703 -0.1021 20 1 7.4098 -4.2158 0.6717 21 1 8.2592 -2.1739 1.6665 22 7 6.9696 -3.6595 2.9290 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.4622 -0.7387 1.9894 31 1 3.0703 -2.7911 2.6703 32 1 3.7796 -1.2685 3.2591 33 1 5.5060 -2.3570 1.3073 34 1 4.1540 -2.9995 4.5907 35 1 5.3612 -4.2462 6.3635 36 1 7.6339 -5.1164 5.8780 37 1 11.2893 -5.3460 2.8057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116636027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:11:03 Heat of formation + Delta-G solvation = -22.668972 kcal Electronic energy + Delta-G solvation = -19274.780691 eV Core-core repulsion = 16244.009720 eV Total energy + Delta-G solvation = -3030.770972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.137 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.04595 -38.65969 -36.35086 -34.97375 -33.41468 -31.94693 -31.09339 -29.57647 -27.53759 -26.51277 -25.28352 -21.94157 -21.84931 -20.77394 -20.13356 -18.33061 -17.68723 -16.53387 -15.82921 -15.66541 -15.36892 -14.63255 -14.46776 -14.21433 -13.70031 -13.53105 -13.41975 -13.10465 -12.67705 -12.57397 -12.41000 -12.33173 -12.09717 -11.73471 -11.68596 -11.26484 -10.66258 -10.65951 -10.20387 -9.94725 -9.59871 -9.48826 -9.33143 -8.93332 -8.45363 -7.62975 -7.15851 -6.88183 -4.73483 2.50571 2.70312 2.83909 2.85081 3.72197 3.80034 3.92513 4.17368 4.46703 4.54400 4.68964 4.73478 4.75323 4.93078 5.24539 5.34412 5.36817 5.40821 5.46166 5.60892 5.67240 5.78857 5.86244 5.97985 6.24394 6.28081 6.50480 6.57115 6.63907 7.20451 7.30520 7.46723 7.51319 7.61194 7.91752 8.04764 8.05963 8.33919 8.50386 8.76589 9.62696 10.07549 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.026934 B = 0.004845 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.326664 B = 5777.943091 C = 6673.703989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.165 4.165 4 N -0.728 5.728 5 C 0.509 3.491 6 O -0.529 6.529 7 C 0.122 3.878 8 N -0.731 5.731 9 C 0.444 3.556 10 C -0.370 4.370 11 C -0.016 4.016 12 C -0.305 4.305 13 C 0.287 3.713 14 C -0.473 4.473 15 H 0.082 0.918 16 C 0.045 3.955 17 N -0.806 5.806 18 Si 1.161 2.839 19 H -0.337 1.337 20 H -0.289 1.289 21 H -0.290 1.290 22 N -0.618 5.618 23 H 0.061 0.939 24 H 0.072 0.928 25 H 0.062 0.938 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.401 0.599 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.407 0.593 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.460 9.377 -0.879 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.031 3.969 3 C -0.223 4.223 4 N -0.381 5.381 5 C 0.295 3.705 6 O -0.404 6.404 7 C -0.008 4.008 8 N -0.371 5.371 9 C 0.207 3.793 10 C -0.396 4.396 11 C -0.040 4.040 12 C -0.328 4.328 13 C 0.163 3.837 14 C -0.505 4.505 15 H 0.101 0.899 16 C -0.176 4.176 17 N -0.428 5.428 18 Si 0.998 3.002 19 H -0.272 1.272 20 H -0.218 1.218 21 H -0.218 1.218 22 N -0.347 5.347 23 H 0.080 0.920 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.235 0.765 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.245 0.755 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.498 10.107 -3.714 21.404 hybrid contribution -0.606 -0.861 2.733 2.928 sum -19.104 9.246 -0.982 21.247 Atomic orbital electron populations 1.22074 0.94082 1.02683 1.02909 1.20945 0.93912 0.93101 0.88933 1.22197 1.02423 0.95691 1.01992 1.46020 1.17842 1.57285 1.16989 1.20789 0.81386 0.78373 0.89904 1.90719 1.55816 1.59013 1.34875 1.20845 0.86609 0.98451 0.94866 1.43949 1.15379 1.61427 1.16323 1.17977 0.88165 0.87080 0.86069 1.20435 1.02971 1.20626 0.95534 1.20688 0.93698 0.93190 0.96415 1.21397 0.98191 1.14203 0.98989 1.18263 0.91922 0.86393 0.87138 1.20770 0.98723 1.26417 1.04637 0.89942 1.27834 0.95249 0.94364 1.00187 1.70666 1.09598 1.26282 1.36248 0.81651 0.71392 0.76391 0.70800 1.27158 1.21765 1.21835 1.65781 1.08781 1.25255 1.34861 0.92024 0.90942 0.91902 0.89345 0.92477 0.91879 0.91660 0.76453 0.89477 0.89490 0.75520 0.88225 0.88125 0.88072 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 9.38 37.16 0.35 -0.54 16 2 C 0.14 1.16 3.18 -67.93 -0.22 0.94 16 3 C -0.16 -1.39 9.48 37.16 0.35 -1.03 16 4 N -0.73 -6.63 5.08 -53.80 -0.27 -6.90 16 5 C 0.51 6.84 7.86 -10.98 -0.09 6.76 16 6 O -0.53 -9.36 15.33 5.56 0.09 -9.27 16 7 C 0.12 1.68 5.36 -5.19 -0.03 1.65 16 8 N -0.73 -14.55 5.69 -61.57 -0.35 -14.90 16 9 C 0.44 10.29 7.65 -155.32 -1.19 9.10 16 10 C -0.37 -7.67 9.34 -38.87 -0.36 -8.03 16 11 C -0.02 -0.34 10.15 -39.40 -0.40 -0.74 16 12 C -0.31 -7.38 9.83 -38.65 -0.38 -7.76 16 13 C 0.29 7.79 6.42 -85.00 -0.55 7.24 16 14 C -0.47 -13.40 9.57 -37.74 -0.36 -13.77 16 15 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 16 C 0.04 1.28 5.52 -17.34 -0.10 1.18 16 17 N -0.81 -22.83 13.65 55.55 0.76 -22.07 16 18 Si 1.16 30.66 25.45 -169.99 -4.33 26.33 16 19 H -0.34 -8.82 7.11 56.52 0.40 -8.41 16 20 H -0.29 -7.70 6.97 56.52 0.39 -7.31 16 21 H -0.29 -7.73 6.91 56.52 0.39 -7.34 16 22 N -0.62 -16.46 4.55 -10.33 -0.05 -16.51 16 23 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 24 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.94 7.58 -51.93 -0.39 0.55 16 27 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.40 2.39 8.60 -40.82 -0.35 2.04 16 31 H 0.09 1.04 7.92 -51.93 -0.41 0.63 16 32 H 0.09 1.05 7.92 -51.93 -0.41 0.63 16 33 H 0.41 8.77 7.56 -40.82 -0.31 8.46 16 34 H 0.10 1.70 6.68 -52.49 -0.35 1.35 16 35 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 36 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 37 H 0.28 7.59 8.72 -40.82 -0.36 7.24 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -33.06 312.50 -7.61 -40.67 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.20 Total: 2.95 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.96 Total: -5.00 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: 0.09 Total: -60.39 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 30.66 SS G_CDS: -4.33 Total: 26.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -33.06 -7.61 -40.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116636027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.002 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds