Wall clock time and date at job start Mon Mar 30 2020 00:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38287 * 119.97319 * 2 1 4 4 C 1.38247 * 120.11084 * 180.02562 * 3 2 1 5 5 C 1.38168 * 120.05649 * 359.67852 * 4 3 2 6 6 C 1.38708 * 119.94125 * 0.57375 * 5 4 3 7 7 O 1.35904 * 120.05570 * 179.72127 * 6 5 4 8 8 C 1.42903 * 116.99628 * 359.72917 * 7 6 5 9 9 C 1.53000 * 109.46726 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47357 * 64.99864 * 9 8 7 11 11 C 1.46903 * 110.99890 * 66.04367 * 10 9 8 12 12 C 1.46901 * 110.99919 * 189.99710 * 10 9 8 13 13 C 1.52994 * 109.47086 * 169.99867 * 12 10 9 14 14 C 1.50699 * 109.47334 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00206 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99982 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99913 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47317 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46882 * 119.99770 * 18 16 14 21 21 H 1.48503 * 109.47542 * 239.99440 * 18 16 14 22 22 C 1.38123 * 119.97441 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.47152 * 270.02361 * 1 2 3 24 24 H 1.09001 * 109.47607 * 30.02162 * 1 2 3 25 25 H 1.08999 * 109.47654 * 150.02566 * 1 2 3 26 26 H 1.08000 * 119.94054 * 359.97438 * 3 2 1 27 27 H 1.08007 * 119.96942 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.02385 * 180.29699 * 5 4 3 29 29 H 1.09002 * 109.47382 * 59.99787 * 8 7 6 30 30 H 1.09001 * 109.46938 * 299.99774 * 8 7 6 31 31 H 1.09002 * 109.46642 * 184.99995 * 9 8 7 32 32 H 1.09002 * 109.47069 * 304.99524 * 9 8 7 33 33 H 1.09003 * 109.46747 * 60.00020 * 11 10 9 34 34 H 1.09001 * 109.46639 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47330 * 300.00019 * 11 10 9 36 36 H 1.09000 * 109.47142 * 290.00332 * 12 10 9 37 37 H 1.08997 * 109.47112 * 50.00069 * 12 10 9 38 38 H 1.09000 * 109.47510 * 300.00240 * 13 12 10 39 39 H 1.09001 * 109.47462 * 60.00166 * 13 12 10 40 40 H 0.97002 * 120.00252 * 179.97438 * 17 16 14 41 41 H 1.08006 * 120.02399 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.2752 0.0070 0.0056 6 6 3.5845 -1.1959 0.0003 7 8 4.2657 -2.3719 0.0007 8 6 5.6927 -2.2949 0.0006 9 6 6.2795 -3.7079 0.0004 10 7 5.9267 -4.3845 -1.2549 11 6 6.5754 -3.7365 -2.4026 12 6 6.2651 -5.8128 -1.1962 13 6 5.6636 -6.5295 -2.4067 14 6 6.0103 -7.9949 -2.3463 15 1 6.6009 -8.3767 -1.5267 16 6 5.5743 -8.8480 -3.3379 17 7 4.8555 -8.3830 -4.3362 18 14 6.0046 -10.6641 -3.2632 19 1 6.8155 -10.9313 -2.0482 20 1 4.7562 -11.4668 -3.2109 21 1 6.7834 -11.0385 -4.4710 22 6 2.1970 -1.1965 0.0005 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.6564 2.1324 -0.0004 27 1 4.1176 2.1382 -0.0010 28 1 5.3552 0.0103 0.0101 29 1 6.0279 -1.7620 0.8904 30 1 6.0278 -1.7626 -0.8896 31 1 7.3643 -3.6508 0.0899 32 1 5.8745 -4.2697 0.8422 33 1 7.6575 -3.7743 -2.2773 34 1 6.2976 -4.2575 -3.3188 35 1 6.2528 -2.6971 -2.4631 36 1 7.3487 -5.9301 -1.2059 37 1 5.8611 -6.2446 -0.2806 38 1 4.5800 -6.4122 -2.3971 39 1 6.0676 -6.0978 -3.3224 40 1 4.5491 -8.9830 -5.0340 41 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053421354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:11 Heat of formation + Delta-G solvation = -20.128562 kcal Electronic energy + Delta-G solvation = -19143.721493 eV Core-core repulsion = 16216.601025 eV Total energy + Delta-G solvation = -2927.120468 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12500 -38.02052 -36.73587 -33.13199 -32.56859 -31.13918 -29.76418 -28.32683 -27.07950 -26.11987 -24.04275 -22.54079 -21.95275 -20.47749 -19.83292 -17.82031 -16.61717 -16.12717 -15.91901 -15.84362 -14.79107 -14.52072 -14.36336 -14.26950 -13.84736 -13.65978 -13.26824 -12.96170 -12.65371 -12.35632 -12.18683 -12.12038 -11.83883 -11.57523 -11.37313 -11.13646 -11.05831 -10.90644 -10.81812 -10.54892 -10.45009 -9.83445 -9.34634 -9.07826 -8.83917 -8.30718 -8.14105 -7.70159 -5.96899 -3.99221 1.26530 1.44570 3.29253 3.32740 3.40017 3.43946 3.71875 4.35668 4.54889 4.72460 4.73423 4.99193 5.03701 5.11652 5.20591 5.27390 5.31214 5.38888 5.45251 5.47797 5.57105 5.64351 5.77369 5.86140 5.87501 5.97857 6.02665 6.27887 6.31101 6.38238 6.44052 6.53020 6.54317 6.76845 6.99410 7.49385 7.51179 7.61335 7.81657 7.93505 8.11968 8.46312 9.08374 9.64172 11.14519 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.003354 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.169847 B = 8346.967227 C = 8965.312673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.168 4.168 4 C -0.078 4.078 5 C -0.221 4.221 6 C 0.143 3.857 7 O -0.291 6.291 8 C 0.066 3.934 9 C 0.053 3.947 10 N -0.535 5.535 11 C 0.023 3.977 12 C 0.063 3.937 13 C 0.027 3.973 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.155 4.155 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.124 0.876 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.049 0.951 32 H 0.083 0.917 33 H 0.017 0.983 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.061 0.939 38 H 0.025 0.975 39 H 0.017 0.983 40 H 0.260 0.740 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.490 19.565 9.619 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.049 4.049 3 C -0.187 4.187 4 C -0.096 4.096 5 C -0.240 4.240 6 C 0.096 3.904 7 O -0.203 6.203 8 C -0.010 4.010 9 C -0.076 4.076 10 N -0.259 5.259 11 C -0.125 4.125 12 C -0.063 4.063 13 C -0.010 4.010 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.173 4.173 23 H 0.090 0.910 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.142 0.858 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.035 0.965 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.069 0.931 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.146 19.330 9.401 21.724 hybrid contribution 1.385 -0.884 0.017 1.643 sum -1.761 18.446 9.418 20.786 Atomic orbital electron populations 1.20807 0.90903 1.03007 1.02419 1.19697 0.95975 0.92313 0.96930 1.20865 0.94125 0.97372 1.06303 1.20874 0.94169 0.97229 0.97367 1.21238 1.00141 0.92379 1.10255 1.19118 0.91963 0.85140 0.94130 1.86266 1.19796 1.26837 1.87435 1.22936 0.78736 0.98693 1.00648 1.22149 0.97140 0.93199 0.95062 1.62066 1.58663 1.04094 1.01126 1.22447 0.95431 0.98901 0.95770 1.22354 0.97230 0.84614 1.02109 1.19101 0.96952 0.93633 0.91309 1.21233 1.33264 0.93364 1.08137 0.92778 1.24999 0.95181 0.98712 0.95481 1.69986 1.36446 1.35077 1.11673 0.86544 0.78157 0.85458 0.77868 1.19798 1.20978 1.21072 1.20360 0.91143 0.98710 1.07134 0.91023 0.91458 0.91159 0.86298 0.86145 0.85783 0.92251 0.91948 0.93288 0.89891 0.96452 0.90070 0.92705 0.96271 0.92054 0.95614 0.96479 0.93072 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.01 36.00 0.36 -0.60 16 2 C -0.05 -0.55 5.88 -104.65 -0.62 -1.17 16 3 C -0.17 -1.75 9.70 -39.56 -0.38 -2.13 16 4 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 5 C -0.22 -2.64 9.04 -39.43 -0.36 -3.00 16 6 C 0.14 2.02 6.69 -39.22 -0.26 1.75 16 7 O -0.29 -4.57 10.08 -19.44 -0.20 -4.77 16 8 C 0.07 0.85 4.80 37.16 0.18 1.03 16 9 C 0.05 0.78 5.34 -3.82 -0.02 0.76 16 10 N -0.54 -10.03 4.71 -242.92 -1.14 -11.18 16 11 C 0.02 0.39 9.13 60.07 0.55 0.94 16 12 C 0.06 1.37 4.90 -3.83 -0.02 1.35 16 13 C 0.03 0.73 4.90 -27.89 -0.14 0.59 16 14 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 15 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 18 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 19 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 22 C -0.15 -2.07 9.64 -39.43 -0.38 -2.45 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 25 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 26 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 27 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 28 H 0.12 1.27 6.30 -52.49 -0.33 0.94 16 29 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 30 H 0.06 0.78 5.87 -51.93 -0.30 0.47 16 31 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.08 1.22 7.93 -51.93 -0.41 0.81 16 33 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 1.57 6.30 -51.93 -0.33 1.25 16 35 H 0.05 0.82 6.37 -51.93 -0.33 0.49 16 36 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 37 H 0.06 1.31 7.93 -51.93 -0.41 0.90 16 38 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.47 6.47 -51.93 -0.34 0.14 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 335.45 15.07 5.06 5.06 Total: -1.00 -31.96 335.45 -9.08 -41.03 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -6.61 Total: -2.64 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: -1.89 Total: -17.86 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: -0.41 Total: -37.68 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.20 Total: -4.77 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.96 -9.08 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053421354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.906 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds