Wall clock time and date at job start Mon Mar 30 2020 00:31:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38287 * 119.97319 * 2 1 4 4 C 1.38247 * 120.11084 * 180.02562 * 3 2 1 5 5 C 1.38168 * 120.05649 * 359.67852 * 4 3 2 6 6 C 1.38708 * 119.94125 * 0.57375 * 5 4 3 7 7 O 1.35904 * 120.05570 * 179.72127 * 6 5 4 8 8 C 1.42903 * 116.99628 * 359.72917 * 7 6 5 9 9 C 1.53000 * 109.46726 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47357 * 64.99864 * 9 8 7 11 11 C 1.46903 * 110.99890 * 66.04367 * 10 9 8 12 12 C 1.46901 * 110.99919 * 189.99710 * 10 9 8 13 13 C 1.52994 * 109.47086 * 169.99867 * 12 10 9 14 14 C 1.50699 * 109.47334 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00145 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00206 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99982 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99913 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47317 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46882 * 119.99770 * 18 16 14 21 21 H 1.48503 * 109.47542 * 239.99440 * 18 16 14 22 22 C 1.38123 * 119.97441 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.47152 * 270.02361 * 1 2 3 24 24 H 1.09001 * 109.47607 * 30.02162 * 1 2 3 25 25 H 1.08999 * 109.47654 * 150.02566 * 1 2 3 26 26 H 1.08000 * 119.94054 * 359.97438 * 3 2 1 27 27 H 1.08007 * 119.96942 * 179.97438 * 4 3 2 28 28 H 1.08001 * 120.02385 * 180.29699 * 5 4 3 29 29 H 1.09002 * 109.47382 * 59.99787 * 8 7 6 30 30 H 1.09001 * 109.46938 * 299.99774 * 8 7 6 31 31 H 1.09002 * 109.46642 * 184.99995 * 9 8 7 32 32 H 1.09002 * 109.47069 * 304.99524 * 9 8 7 33 33 H 1.09003 * 109.46747 * 60.00020 * 11 10 9 34 34 H 1.09001 * 109.46639 * 179.97438 * 11 10 9 35 35 H 1.09000 * 109.47330 * 300.00019 * 11 10 9 36 36 H 1.09000 * 109.47142 * 290.00332 * 12 10 9 37 37 H 1.08997 * 109.47112 * 50.00069 * 12 10 9 38 38 H 1.09000 * 109.47510 * 300.00240 * 13 12 10 39 39 H 1.09001 * 109.47462 * 60.00166 * 13 12 10 40 40 H 0.97002 * 120.00252 * 179.97438 * 17 16 14 41 41 H 1.08006 * 120.02399 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1978 1.1979 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.2752 0.0070 0.0056 6 6 3.5845 -1.1959 0.0003 7 8 4.2657 -2.3719 0.0007 8 6 5.6927 -2.2949 0.0006 9 6 6.2795 -3.7079 0.0004 10 7 5.9267 -4.3845 -1.2549 11 6 6.5754 -3.7365 -2.4026 12 6 6.2651 -5.8128 -1.1962 13 6 5.6636 -6.5295 -2.4067 14 6 6.0103 -7.9949 -2.3463 15 1 6.6009 -8.3767 -1.5267 16 6 5.5743 -8.8480 -3.3379 17 7 4.8555 -8.3830 -4.3362 18 14 6.0046 -10.6641 -3.2632 19 1 6.8155 -10.9313 -2.0482 20 1 4.7562 -11.4668 -3.2109 21 1 6.7834 -11.0385 -4.4710 22 6 2.1970 -1.1965 0.0005 23 1 -0.3634 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.6564 2.1324 -0.0004 27 1 4.1176 2.1382 -0.0010 28 1 5.3552 0.0103 0.0101 29 1 6.0279 -1.7620 0.8904 30 1 6.0278 -1.7626 -0.8896 31 1 7.3643 -3.6508 0.0899 32 1 5.8745 -4.2697 0.8422 33 1 7.6575 -3.7743 -2.2773 34 1 6.2976 -4.2575 -3.3188 35 1 6.2528 -2.6971 -2.4631 36 1 7.3487 -5.9301 -1.2059 37 1 5.8611 -6.2446 -0.2806 38 1 4.5800 -6.4122 -2.3971 39 1 6.0676 -6.0978 -3.3224 40 1 4.5491 -8.9830 -5.0340 41 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053421354.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:11 Heat of formation + Delta-G solvation = -39.593656 kcal Electronic energy + Delta-G solvation = -19144.565563 eV Core-core repulsion = 16216.601025 eV Total energy + Delta-G solvation = -2927.964538 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.07943 -39.15269 -38.03750 -35.22688 -33.37486 -32.60257 -31.11051 -29.66828 -27.96084 -27.63967 -25.80234 -23.43819 -23.24299 -21.86407 -21.24383 -18.76680 -18.64084 -17.24646 -17.05734 -16.81737 -16.51369 -16.18488 -15.72702 -15.17639 -15.16089 -14.50110 -14.41281 -14.17892 -14.11612 -13.97207 -13.40834 -13.11762 -12.98149 -12.91153 -12.82165 -12.64739 -12.46874 -12.36095 -12.22698 -11.83526 -11.73314 -11.55477 -11.31338 -11.18301 -10.55207 -9.70425 -9.15826 -9.06183 -8.20289 -6.32003 0.40103 0.55032 1.39561 1.40599 1.53835 2.32465 2.39910 2.84430 3.06215 3.12921 3.83178 3.94680 4.01957 4.11429 4.17014 4.26278 4.35863 4.40469 4.44646 4.47323 4.55992 4.61393 4.65820 4.74279 4.83216 4.84082 4.90535 5.02295 5.05948 5.10375 5.26489 5.43160 5.45345 5.52876 5.65075 5.69037 5.77911 5.94143 6.08825 6.27461 6.32637 6.60398 6.85696 7.37136 8.92237 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.027905 B = 0.003354 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.169847 B = 8346.967227 C = 8965.312673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.055 4.055 3 C -0.169 4.169 4 C -0.078 4.078 5 C -0.227 4.227 6 C 0.116 3.884 7 O -0.324 6.324 8 C 0.067 3.933 9 C 0.053 3.947 10 N -0.556 5.556 11 C 0.028 3.972 12 C 0.081 3.919 13 C 0.035 3.965 14 C -0.544 4.544 15 H 0.061 0.939 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.969 3.031 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.277 1.277 22 C -0.184 4.184 23 H 0.083 0.917 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.147 0.853 27 H 0.151 0.849 28 H 0.141 0.859 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.026 0.974 37 H 0.061 0.939 38 H -0.014 1.014 39 H -0.005 1.005 40 H 0.263 0.737 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 20.957 10.750 23.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.055 4.055 3 C -0.187 4.187 4 C -0.096 4.096 5 C -0.245 4.245 6 C 0.070 3.930 7 O -0.238 6.238 8 C -0.008 4.008 9 C -0.075 4.075 10 N -0.281 5.281 11 C -0.120 4.120 12 C -0.047 4.047 13 C -0.002 4.002 14 C -0.582 4.582 15 H 0.080 0.920 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.184 1.184 20 H -0.204 1.204 21 H -0.202 1.202 22 C -0.203 4.203 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.083 0.917 26 H 0.165 0.835 27 H 0.169 0.831 28 H 0.158 0.842 29 H 0.108 0.892 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.005 0.995 39 H 0.014 0.986 40 H 0.072 0.928 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.228 20.744 10.548 23.378 hybrid contribution 1.045 -1.208 -0.335 1.632 sum -1.183 19.537 10.213 22.077 Atomic orbital electron populations 1.20863 0.89151 1.03666 1.03365 1.20043 0.97411 0.91952 0.96080 1.21265 0.94489 0.98014 1.04946 1.21296 0.94491 0.97920 0.95898 1.21467 1.01063 0.92019 1.09991 1.19379 0.92284 0.85499 0.95798 1.86209 1.21099 1.28317 1.88138 1.23006 0.77785 0.97625 1.02358 1.22250 0.98816 0.93804 0.92589 1.61932 1.59845 1.02846 1.03493 1.22377 0.96366 0.99409 0.93850 1.21965 0.96977 0.86407 0.99320 1.18929 0.94537 0.93862 0.92888 1.21663 1.33488 0.94553 1.08513 0.92045 1.26009 0.94818 1.04165 0.94902 1.70130 1.37488 1.37125 1.12529 0.85345 0.78138 0.78745 0.78462 1.18429 1.20419 1.20247 1.20522 0.91489 0.99243 1.09014 0.89847 0.89611 0.91691 0.83508 0.83094 0.84172 0.89239 0.91318 0.90744 0.90291 0.94722 0.93367 0.90467 0.95549 0.92076 0.99544 0.98637 0.92776 0.86516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.01 71.23 0.71 -1.07 16 2 C -0.05 -1.18 5.88 -19.88 -0.12 -1.30 16 3 C -0.17 -3.10 9.70 22.28 0.22 -2.88 16 4 C -0.08 -1.43 10.04 22.26 0.22 -1.21 16 5 C -0.23 -5.03 9.04 22.37 0.20 -4.83 16 6 C 0.12 3.28 6.69 22.50 0.15 3.43 16 7 O -0.32 -10.30 10.08 -92.47 -0.93 -11.23 16 8 C 0.07 1.65 4.80 71.98 0.35 1.99 16 9 C 0.05 1.49 5.34 86.30 0.46 1.95 16 10 N -0.56 -20.98 4.71 -922.45 -4.35 -25.33 16 11 C 0.03 0.96 9.13 127.69 1.17 2.12 16 12 C 0.08 3.54 4.90 86.30 0.42 3.96 16 13 C 0.04 1.96 4.90 29.85 0.15 2.11 16 14 C -0.54 -31.90 9.11 25.60 0.23 -31.66 16 15 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 17 N -0.93 -58.45 13.29 21.45 0.28 -58.17 16 18 Si 0.97 45.13 29.54 68.60 2.03 47.15 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 22 C -0.18 -5.07 9.64 22.36 0.22 -4.85 16 23 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.09 1.01 8.09 -2.39 -0.02 1.00 16 25 H 0.06 1.07 8.08 -2.39 -0.02 1.05 16 26 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 27 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 28 H 0.14 2.52 6.30 -2.91 -0.02 2.50 16 29 H 0.09 1.65 7.65 -2.39 -0.02 1.63 16 30 H 0.07 1.57 5.87 -2.39 -0.01 1.56 16 31 H 0.07 1.74 8.12 -2.39 -0.02 1.72 16 32 H 0.08 2.28 7.93 -2.39 -0.02 2.26 16 33 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.95 6.30 -2.39 -0.02 1.93 16 35 H 0.08 2.26 6.37 -2.39 -0.02 2.25 16 36 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 37 H 0.06 2.64 7.93 -2.39 -0.02 2.62 16 38 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 39 H 0.00 -0.28 6.47 -2.39 -0.02 -0.29 16 40 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 Total: -1.00 -71.30 335.45 2.86 -68.44 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.99 Total: 10.97 kcal Atomic # 6 Polarization: -36.68 SS G_CDS: 4.84 Total: -31.84 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -4.06 Total: -83.50 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.93 Total: -11.23 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -71.30 2.86 -68.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053421354.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.845 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds