Wall clock time and date at job start Mon Mar 30 2020 00:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00238 * 2 1 4 4 C 1.38753 * 120.05532 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.94328 * 179.97438 * 4 3 2 6 6 C 1.38279 * 120.05826 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94587 * 180.02562 * 6 5 4 8 8 C 1.38240 * 120.11131 * 359.74320 * 6 5 4 9 9 C 1.38164 * 120.05720 * 0.50680 * 8 6 5 10 10 C 1.50701 * 120.03025 * 179.76696 * 9 8 6 11 11 N 1.46897 * 109.47242 * 259.72729 * 10 9 8 12 12 C 1.46896 * 111.00390 * 66.04812 * 11 10 9 13 13 C 1.46906 * 111.00012 * 190.00433 * 11 10 9 14 14 H 1.08998 * 109.46389 * 299.99580 * 13 11 10 15 15 C 1.52997 * 109.47302 * 59.99745 * 13 11 10 16 16 C 1.50697 * 109.47180 * 180.02562 * 13 11 10 17 17 H 1.07998 * 120.00039 * 359.97438 * 16 13 11 18 18 C 1.37880 * 119.99815 * 179.97438 * 16 13 11 19 19 N 1.31508 * 119.99915 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 119.99777 * 179.97438 * 18 16 13 21 21 H 1.48506 * 109.46954 * 59.99790 * 20 18 16 22 22 H 1.48496 * 109.46873 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47158 * 300.00368 * 20 18 16 24 24 H 1.08998 * 109.47166 * 59.99926 * 1 2 3 25 25 H 1.08997 * 109.47342 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.46818 * 300.00240 * 1 2 3 27 27 H 1.07999 * 120.02395 * 0.02562 * 4 3 2 28 28 H 1.08006 * 119.96936 * 180.02562 * 5 4 3 29 29 H 1.08996 * 109.47919 * 89.99536 * 7 6 5 30 30 H 1.09002 * 109.47179 * 209.99718 * 7 6 5 31 31 H 1.09003 * 109.46559 * 329.99219 * 7 6 5 32 32 H 1.08008 * 119.97672 * 180.25672 * 8 6 5 33 33 H 1.09009 * 109.46789 * 139.73011 * 10 9 8 34 34 H 1.09000 * 109.47165 * 19.73105 * 10 9 8 35 35 H 1.08994 * 109.47833 * 183.95153 * 12 11 10 36 36 H 1.09009 * 109.46755 * 303.95702 * 12 11 10 37 37 H 1.09001 * 109.47104 * 63.94533 * 12 11 10 38 38 H 1.09002 * 109.47153 * 180.02562 * 15 13 11 39 39 H 1.09001 * 109.46832 * 60.00356 * 15 13 11 40 40 H 1.09004 * 109.47261 * 300.00337 * 15 13 11 41 41 H 0.97001 * 119.99839 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3019 3.6757 0.0005 7 6 3.9861 5.0185 0.0017 8 6 4.0559 2.5171 0.0048 9 6 3.4312 1.2848 -0.0009 10 6 4.2538 0.0221 -0.0015 11 7 4.3190 -0.5191 -1.3656 12 6 5.0629 0.3829 -2.2549 13 6 4.9066 -1.8656 -1.3702 14 1 5.9166 -1.8225 -0.9626 15 6 4.0498 -2.7989 -0.5125 16 6 4.9576 -2.3866 -2.7833 17 1 4.5899 -1.7786 -3.5966 18 6 5.4737 -3.6396 -3.0379 19 7 5.9219 -4.3797 -2.0475 20 14 5.5362 -4.2857 -4.7895 21 1 6.3673 -3.3793 -5.6221 22 1 6.1314 -5.6462 -4.7942 23 1 4.1601 -4.3448 -5.3447 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.2129 2.3203 0.0014 28 1 1.3340 4.5114 0.0019 29 1 4.1515 5.3412 1.0296 30 1 4.9439 4.9387 -0.5126 31 1 3.3579 5.7467 -0.5112 32 1 5.1345 2.5751 0.0086 33 1 3.7926 -0.7122 0.6591 34 1 5.2613 0.2447 0.3497 35 1 5.0362 -0.0066 -3.2726 36 1 4.6068 1.3727 -2.2326 37 1 6.0976 0.4521 -1.9194 38 1 4.4860 -3.7978 -0.5156 39 1 3.0398 -2.8419 -0.9202 40 1 4.0133 -2.4218 0.5096 41 1 6.2853 -5.2610 -2.2267 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058575398.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:39 Heat of formation + Delta-G solvation = -26.870394 kcal Electronic energy + Delta-G solvation = -20395.885984 eV Core-core repulsion = 17468.473168 eV Total energy + Delta-G solvation = -2927.412816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.19952 -38.84335 -38.24241 -35.01683 -33.11500 -32.30098 -30.85566 -28.63497 -28.51942 -26.77723 -26.44106 -24.93818 -22.83489 -21.89046 -20.82916 -18.78998 -18.32970 -17.38826 -17.00174 -16.51037 -16.00980 -15.82614 -15.51595 -15.13553 -15.00118 -14.66025 -14.36053 -14.17234 -13.93270 -13.45279 -13.12279 -12.95103 -12.90302 -12.82092 -12.71183 -12.58869 -12.47557 -12.20448 -12.05883 -11.93390 -11.83676 -11.61461 -11.36116 -10.89058 -10.51173 -9.75432 -8.89366 -8.79780 -8.09377 -6.21523 0.42891 0.57179 1.42157 1.44517 1.52151 2.43109 2.57916 2.81185 3.18230 3.55235 3.85847 3.93695 4.10411 4.28702 4.35107 4.45290 4.50187 4.51109 4.60214 4.65764 4.72326 4.74494 4.80283 4.86682 4.93186 4.95556 5.05639 5.07413 5.18167 5.24834 5.27557 5.44300 5.51851 5.56570 5.72695 5.74568 5.80780 6.00656 6.26684 6.43786 6.64869 6.77127 6.92907 7.47182 8.96455 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.024488 B = 0.005312 C = 0.004832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.120973 B = 5270.207179 C = 5793.128038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.330 6.330 3 C 0.124 3.876 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.131 4.131 7 C -0.103 4.103 8 C -0.087 4.087 9 C -0.120 4.120 10 C 0.103 3.897 11 N -0.532 5.532 12 C 0.047 3.953 13 C 0.218 3.782 14 H -0.040 1.040 15 C -0.113 4.113 16 C -0.518 4.518 17 H 0.057 0.943 18 C 0.011 3.989 19 N -0.921 5.921 20 Si 0.961 3.039 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.272 1.272 24 H 0.061 0.939 25 H 0.103 0.897 26 H 0.070 0.930 27 H 0.148 0.852 28 H 0.152 0.848 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.126 0.874 33 H 0.069 0.931 34 H 0.023 0.977 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.006 0.994 38 H 0.059 0.941 39 H 0.028 0.972 40 H 0.024 0.976 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.149 16.578 5.169 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.243 6.243 3 C 0.078 3.922 4 C -0.228 4.228 5 C -0.103 4.103 6 C -0.131 4.131 7 C -0.160 4.160 8 C -0.106 4.106 9 C -0.121 4.121 10 C -0.025 4.025 11 N -0.256 5.256 12 C -0.102 4.102 13 C 0.111 3.889 14 H -0.023 1.023 15 C -0.171 4.171 16 C -0.556 4.556 17 H 0.075 0.925 18 C -0.187 4.187 19 N -0.561 5.561 20 Si 0.787 3.213 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.198 1.198 24 H 0.079 0.921 25 H 0.122 0.878 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.170 0.830 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.144 0.856 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.024 0.976 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.462 16.147 5.024 19.378 hybrid contribution 0.917 -0.814 -0.445 1.304 sum -8.545 15.333 4.579 18.141 Atomic orbital electron populations 1.23240 0.77310 1.04761 1.01976 1.86210 1.22693 1.27180 1.88242 1.19038 0.91778 0.84991 0.96358 1.21451 1.00834 0.91807 1.08729 1.21123 0.93960 0.97526 0.97648 1.20077 0.94072 0.95849 1.03128 1.20726 1.00337 0.92065 1.02872 1.20903 0.99904 0.90713 0.99090 1.19247 0.91424 0.95118 1.06290 1.20799 0.96141 0.93946 0.91572 1.62061 1.53278 1.02814 1.07431 1.22127 0.94292 0.96032 0.97728 1.19042 0.89686 0.84789 0.95372 1.02274 1.21584 0.98551 1.01176 0.95774 1.21366 1.40030 1.01247 0.92997 0.92474 1.25724 0.94969 0.96916 1.01124 1.70021 1.42291 1.11153 1.32612 0.85565 0.78431 0.77315 0.80015 1.19649 1.20787 1.19765 0.92071 0.87816 0.91187 0.83449 0.83012 0.90497 0.91669 0.90229 0.85630 0.91261 0.95920 0.92467 0.91529 0.97572 0.92182 0.95275 0.95715 0.92927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 9.81 113.37 1.11 1.61 16 2 O -0.33 -11.38 9.73 -92.45 -0.90 -12.28 16 3 C 0.12 4.06 6.66 22.51 0.15 4.21 16 4 C -0.21 -5.24 9.04 22.36 0.20 -5.04 16 5 C -0.08 -1.83 9.69 22.25 0.22 -1.62 16 6 C -0.13 -3.06 5.88 -19.85 -0.12 -3.18 16 7 C -0.10 -1.68 10.01 71.24 0.71 -0.97 16 8 C -0.09 -2.54 8.29 22.25 0.18 -2.35 16 9 C -0.12 -4.16 4.58 -19.77 -0.09 -4.25 16 10 C 0.10 4.24 4.57 85.56 0.39 4.63 16 11 N -0.53 -24.98 4.61 -906.04 -4.18 -29.16 16 12 C 0.05 2.00 9.01 127.69 1.15 3.15 16 13 C 0.22 11.88 2.06 44.17 0.09 11.97 16 14 H -0.04 -2.42 8.14 -2.39 -0.02 -2.44 16 15 C -0.11 -5.96 8.77 71.98 0.63 -5.33 16 16 C -0.52 -29.84 7.93 25.60 0.20 -29.64 16 17 H 0.06 3.28 6.39 -2.91 -0.02 3.26 16 18 C 0.01 0.63 5.30 84.66 0.45 1.08 16 19 N -0.92 -54.64 11.32 21.45 0.24 -54.40 16 20 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 23 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 24 H 0.06 1.25 7.66 -2.39 -0.02 1.23 16 25 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.07 1.26 7.66 -2.38 -0.02 1.24 16 27 H 0.15 2.84 6.30 -2.91 -0.02 2.82 16 28 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 31 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 32 H 0.13 3.43 8.04 -2.91 -0.02 3.40 16 33 H 0.07 3.01 5.54 -2.38 -0.01 3.00 16 34 H 0.02 0.92 7.98 -2.39 -0.02 0.90 16 35 H 0.06 2.60 6.23 -2.39 -0.01 2.58 16 36 H 0.07 2.51 6.43 -2.38 -0.02 2.49 16 37 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 39 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.02 1.17 6.20 -2.38 -0.01 1.16 16 41 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -67.36 325.90 3.48 -63.89 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.00 Total: 10.76 kcal Atomic # 6 Polarization: -31.01 SS G_CDS: 5.29 Total: -25.72 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -3.94 Total: -83.56 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: -0.90 Total: -12.28 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -67.36 3.48 -63.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058575398.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.015 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds