Wall clock time and date at job start Mon Mar 30 2020 00:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35895 * 117.00194 * 2 1 4 4 C 1.38753 * 120.05779 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94212 * 180.25731 * 4 3 2 6 6 C 1.38289 * 120.05896 * 359.41677 * 5 4 3 7 7 C 1.50700 * 119.94615 * 180.32354 * 6 5 4 8 8 C 1.38245 * 120.10736 * 0.60441 * 6 5 4 9 9 C 1.38169 * 120.05541 * 359.67504 * 8 6 5 10 10 C 1.50703 * 120.02358 * 179.97438 * 9 8 6 11 11 N 1.46905 * 109.47029 * 260.02187 * 10 9 8 12 12 C 1.46900 * 110.99955 * 66.05146 * 11 10 9 13 13 C 1.46900 * 110.99652 * 190.00095 * 11 10 9 14 14 H 1.09008 * 109.47186 * 55.00426 * 13 11 10 15 15 C 1.53001 * 109.47321 * 295.00390 * 13 11 10 16 16 C 1.50706 * 109.47046 * 175.00263 * 13 11 10 17 17 H 1.07989 * 119.99945 * 114.87692 * 16 13 11 18 18 C 1.37876 * 119.99604 * 294.87591 * 16 13 11 19 19 N 1.31510 * 119.99621 * 178.53693 * 18 16 13 20 20 Si 1.86806 * 120.00271 * 358.53371 * 18 16 13 21 21 H 1.48495 * 109.47088 * 85.34897 * 20 18 16 22 22 H 1.48505 * 109.46881 * 205.34581 * 20 18 16 23 23 H 1.48498 * 109.46976 * 325.34806 * 20 18 16 24 24 H 1.08999 * 109.46829 * 300.00234 * 1 2 3 25 25 H 1.09009 * 109.46705 * 59.99884 * 1 2 3 26 26 H 1.08991 * 109.47575 * 179.97438 * 1 2 3 27 27 H 1.07998 * 120.02551 * 359.97378 * 4 3 2 28 28 H 1.08002 * 119.96957 * 179.71871 * 5 4 3 29 29 H 1.08997 * 109.47258 * 270.27913 * 7 6 5 30 30 H 1.09001 * 109.46866 * 30.27935 * 7 6 5 31 31 H 1.09004 * 109.46903 * 150.27877 * 7 6 5 32 32 H 1.08002 * 119.96729 * 179.69755 * 8 6 5 33 33 H 1.08994 * 109.47493 * 20.02589 * 10 9 8 34 34 H 1.09001 * 109.46566 * 140.02847 * 10 9 8 35 35 H 1.08998 * 109.47298 * 59.99362 * 12 11 10 36 36 H 1.08997 * 109.47281 * 179.97438 * 12 11 10 37 37 H 1.09001 * 109.47148 * 300.00222 * 12 11 10 38 38 H 1.08997 * 109.47072 * 294.56780 * 15 13 11 39 39 H 1.08994 * 109.47252 * 54.56853 * 15 13 11 40 40 H 1.09000 * 109.47111 * 174.56997 * 15 13 11 41 41 H 0.97008 * 120.00088 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6046 -0.0048 6 6 3.3021 3.6756 0.0014 7 6 3.9864 5.0184 0.0029 8 6 4.0561 2.5169 0.0005 9 6 3.4311 1.2846 0.0000 10 6 4.2538 0.0219 -0.0016 11 7 4.3189 -0.5183 -1.3661 12 6 5.0627 0.3844 -2.2548 13 6 4.9065 -1.8646 -1.3718 14 1 4.3479 -2.5077 -0.6915 15 6 6.3653 -1.7864 -0.9171 16 6 4.8446 -2.4339 -2.7658 17 1 5.7567 -2.6347 -3.3080 18 6 3.6235 -2.6984 -3.3488 19 7 3.5688 -3.1682 -4.5759 20 14 2.0469 -2.3897 -2.3956 21 1 1.6448 -0.9687 -2.5509 22 1 0.9711 -3.2687 -2.9203 23 1 2.2715 -2.6863 -0.9580 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0275 -0.0005 27 1 0.2129 2.3204 0.0005 28 1 1.3342 4.5113 -0.0090 29 1 4.1516 5.3431 -1.0244 30 1 3.3582 5.7456 0.5173 31 1 4.9442 4.9375 0.5169 32 1 5.1346 2.5750 0.0004 33 1 5.2613 0.2442 0.3497 34 1 3.7927 -0.7128 0.6584 35 1 6.0784 0.5086 -1.8792 36 1 5.0962 -0.0397 -3.2583 37 1 4.5660 1.3542 -2.2861 38 1 6.9442 -1.2232 -1.6490 39 1 6.4181 -1.2867 0.0501 40 1 6.7728 -2.7934 -0.8285 41 1 2.7096 -3.3539 -4.9863 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058575402.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:24:42 Heat of formation + Delta-G solvation = -7.299468 kcal Electronic energy + Delta-G solvation = -20944.733186 eV Core-core repulsion = 18018.169030 eV Total energy + Delta-G solvation = -2926.564157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.07412 -37.60172 -36.98247 -32.88843 -31.82612 -31.22242 -29.13171 -27.68331 -26.68315 -25.64443 -25.40297 -23.38439 -21.67635 -20.27035 -18.94133 -17.68082 -16.66278 -16.17115 -15.59496 -15.04967 -14.70128 -14.19946 -14.13743 -13.79193 -13.56053 -13.44012 -13.26539 -12.69185 -12.52039 -12.13039 -12.04035 -11.99140 -11.62324 -11.37412 -11.27053 -10.96334 -10.68898 -10.65298 -10.60812 -10.45190 -10.11067 -9.81664 -9.50533 -9.02724 -8.60908 -8.42128 -7.71669 -7.07934 -5.93101 -3.99841 1.53986 1.65949 3.54337 3.63611 3.71055 3.88948 3.92841 4.74383 4.88987 4.96036 5.02458 5.14217 5.21827 5.31475 5.38248 5.47088 5.62683 5.63246 5.64235 5.70812 5.82610 5.93439 5.96944 6.10962 6.25310 6.33537 6.38836 6.40826 6.45576 6.53338 6.60550 6.70837 6.78464 6.93116 7.04757 7.09388 7.32936 7.71917 7.76425 8.15854 8.37163 8.68459 9.06675 9.72274 11.15888 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019701 B = 0.008093 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.923458 B = 3458.875570 C = 4265.361897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.144 3.856 4 C -0.211 4.211 5 C -0.089 4.089 6 C -0.132 4.132 7 C -0.104 4.104 8 C -0.078 4.078 9 C -0.093 4.093 10 C 0.094 3.906 11 N -0.524 5.524 12 C 0.039 3.961 13 C 0.170 3.830 14 H 0.044 0.956 15 C -0.164 4.164 16 C -0.510 4.510 17 H 0.070 0.930 18 C 0.081 3.919 19 N -0.903 5.903 20 Si 0.920 3.080 21 H -0.267 1.267 22 H -0.319 1.319 23 H -0.269 1.269 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.033 0.967 34 H 0.074 0.926 35 H 0.010 0.990 36 H 0.081 0.919 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.029 0.971 40 H 0.048 0.952 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.693 13.370 11.204 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.207 6.207 3 C 0.098 3.902 4 C -0.230 4.230 5 C -0.107 4.107 6 C -0.133 4.133 7 C -0.161 4.161 8 C -0.096 4.096 9 C -0.094 4.094 10 C -0.034 4.034 11 N -0.249 5.249 12 C -0.109 4.109 13 C 0.065 3.935 14 H 0.062 0.938 15 C -0.223 4.223 16 C -0.548 4.548 17 H 0.088 0.912 18 C -0.123 4.123 19 N -0.541 5.541 20 Si 0.751 3.249 21 H -0.193 1.193 22 H -0.249 1.249 23 H -0.195 1.195 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.113 0.887 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.141 0.859 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.028 0.972 36 H 0.099 0.901 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.187 13.058 10.889 17.510 hybrid contribution -0.396 0.375 0.556 0.779 sum -4.582 13.433 11.445 18.233 Atomic orbital electron populations 1.23013 0.79572 1.03688 1.00745 1.86272 1.20236 1.26334 1.87874 1.18839 0.91876 0.84172 0.95312 1.21153 0.99670 0.92443 1.09740 1.20659 0.93845 0.96623 0.99582 1.19697 0.93597 0.95222 1.04739 1.20661 0.99982 0.93587 1.01877 1.20743 0.99372 0.90625 0.98878 1.19348 0.90855 0.95816 1.03386 1.20899 0.95925 0.92808 0.93773 1.62660 1.53449 1.03731 1.05043 1.22126 0.93952 0.95386 0.99430 1.19884 0.89362 0.85903 0.98352 0.93847 1.22294 1.00787 1.00679 0.98538 1.20858 0.94127 1.41474 0.98319 0.91235 1.25045 0.99973 0.92736 0.94519 1.69976 1.25738 1.44565 1.13785 0.86116 0.80847 0.77927 0.79985 1.19282 1.24883 1.19457 0.93035 0.92864 0.88665 0.85914 0.86464 0.91695 0.92148 0.91952 0.85917 0.94919 0.90771 0.97171 0.90071 0.93960 0.93309 0.95227 0.93242 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.81 101.05 0.99 1.35 16 2 O -0.29 -5.52 8.72 -19.41 -0.17 -5.69 16 3 C 0.14 2.55 6.66 -39.22 -0.26 2.29 16 4 C -0.21 -3.12 9.04 -39.43 -0.36 -3.48 16 5 C -0.09 -1.18 9.69 -39.61 -0.38 -1.57 16 6 C -0.13 -1.78 5.88 -104.60 -0.62 -2.39 16 7 C -0.10 -1.06 10.01 36.01 0.36 -0.70 16 8 C -0.08 -1.17 8.38 -39.60 -0.33 -1.51 16 9 C -0.09 -1.64 4.59 -104.47 -0.48 -2.12 16 10 C 0.09 1.79 4.21 -4.97 -0.02 1.77 16 11 N -0.52 -11.72 2.87 -237.72 -0.68 -12.40 16 12 C 0.04 0.83 8.52 60.06 0.51 1.34 16 13 C 0.17 4.09 1.70 -68.86 -0.12 3.97 16 14 H 0.04 1.10 6.74 -51.92 -0.35 0.75 16 15 C -0.16 -3.38 8.39 37.16 0.31 -3.07 16 16 C -0.51 -14.46 7.75 -34.44 -0.27 -14.73 16 17 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 18 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 19 N -0.90 -28.26 13.96 55.43 0.77 -27.48 16 20 Si 0.92 24.28 25.33 -169.99 -4.31 19.97 16 21 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.32 -8.48 7.11 56.52 0.40 -8.08 16 23 H -0.27 -6.97 6.50 56.52 0.37 -6.60 16 24 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 25 H 0.05 0.71 7.66 -51.92 -0.40 0.31 16 26 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 27 H 0.12 1.53 6.30 -52.49 -0.33 1.20 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.12 1.68 8.04 -52.49 -0.42 1.25 16 33 H 0.03 0.58 6.68 -51.93 -0.35 0.23 16 34 H 0.07 1.47 7.71 -51.93 -0.40 1.07 16 35 H 0.01 0.19 6.63 -51.93 -0.34 -0.15 16 36 H 0.08 1.94 6.99 -51.93 -0.36 1.58 16 37 H 0.04 0.84 6.65 -51.93 -0.35 0.49 16 38 H 0.05 1.00 6.79 -51.93 -0.35 0.65 16 39 H 0.03 0.53 6.50 -51.93 -0.34 0.20 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 LS Contribution 320.98 15.07 4.84 4.84 Total: -1.00 -32.34 320.98 -6.81 -39.14 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -6.51 Total: -1.83 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -0.75 Total: -16.55 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.09 Total: -39.88 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.17 Total: -5.69 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -4.31 Total: 19.97 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.34 -6.81 -39.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058575402.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.843 kcal (2) G-P(sol) polarization free energy of solvation -32.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds