Wall clock time and date at job start Sun Mar 29 2020 23:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99611 * 2 1 4 4 H 1.48500 * 109.46852 * 275.48451 * 3 2 1 5 5 H 1.48491 * 109.47417 * 35.48226 * 3 2 1 6 6 H 1.48498 * 109.47030 * 155.48698 * 3 2 1 7 7 C 1.38949 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00056 * 342.30606 * 7 2 1 9 9 N 1.37098 * 120.00253 * 162.31330 * 7 2 1 10 10 C 1.34773 * 119.99478 * 314.58347 * 9 7 2 11 11 O 1.21297 * 120.00285 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99779 * 179.97438 * 10 9 7 13 13 C 1.53005 * 109.46927 * 181.48858 * 12 10 9 14 14 C 1.52997 * 109.46979 * 301.29660 * 13 12 10 15 15 C 1.52997 * 117.50103 * 231.25481 * 14 13 12 16 16 C 1.53002 * 117.49974 * 299.91482 * 14 13 12 17 17 C 1.52993 * 109.47383 * 61.29902 * 13 12 10 18 18 C 1.52998 * 117.50296 * 129.19028 * 17 13 12 19 19 C 1.53006 * 117.49809 * 60.52990 * 17 13 12 20 20 C 1.46497 * 120.00332 * 134.58835 * 9 7 2 21 21 C 1.52997 * 117.49984 * 10.69783 * 20 9 7 22 22 C 1.53001 * 117.49639 * 302.03960 * 20 9 7 23 23 H 0.96996 * 120.00602 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46694 * 61.49080 * 12 10 9 25 25 H 1.09001 * 109.47094 * 301.48713 * 12 10 9 26 26 H 1.08995 * 109.46610 * 181.29950 * 13 12 10 27 27 H 1.09003 * 115.54978 * 85.58546 * 14 13 12 28 28 H 1.09001 * 117.50369 * 215.00501 * 15 14 13 29 29 H 1.09004 * 117.49969 * 0.02575 * 15 14 13 30 30 H 1.09001 * 117.50155 * 359.97438 * 16 14 13 31 31 H 1.09003 * 117.49514 * 144.97410 * 16 14 13 32 32 H 1.09004 * 115.55049 * 274.86144 * 17 13 12 33 33 H 1.09003 * 117.49521 * 0.02562 * 18 17 13 34 34 H 1.08996 * 117.50339 * 145.02237 * 18 17 13 35 35 H 1.09007 * 117.49569 * 214.97843 * 19 17 13 36 36 H 1.08991 * 117.50003 * 359.97438 * 19 17 13 37 37 H 1.08995 * 115.55088 * 156.37088 * 20 9 7 38 38 H 1.09005 * 117.49997 * 0.02562 * 21 20 9 39 39 H 1.08994 * 117.50255 * 145.02357 * 21 20 9 40 40 H 1.09001 * 117.49689 * 214.97866 * 22 20 9 41 41 H 1.09004 * 117.49946 * 359.97409 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3796 2.1133 -1.3937 5 1 1.5082 2.6165 0.8126 6 1 3.5987 1.4096 0.5809 7 6 2.0089 -1.2033 0.0005 8 1 1.5073 -2.1164 0.2852 9 7 3.3313 -1.2315 -0.3602 10 6 3.7457 -0.5624 -1.4542 11 8 2.9488 0.0651 -2.1195 12 6 5.1994 -0.5929 -1.8505 13 6 5.4066 0.2707 -3.0964 14 6 4.5293 -0.2563 -4.2338 15 6 5.2043 -0.5249 -5.5803 16 6 4.7633 -1.6953 -4.6978 17 6 5.0213 1.7179 -2.7837 18 6 6.0310 2.8107 -3.1405 19 6 5.7981 2.4321 -1.6757 20 6 4.2939 -1.9889 0.4435 21 6 3.7358 -2.9249 1.5175 22 6 4.4249 -1.6194 1.9225 23 1 -0.4851 0.8400 -0.0004 24 1 5.4956 -1.6194 -2.0665 25 1 5.8069 -0.2036 -1.0335 26 1 6.4536 0.2301 -3.3965 27 1 3.5055 0.1175 -4.2497 28 1 4.6247 -0.3279 -6.4821 29 1 6.2735 -0.3267 -5.6558 30 1 5.5424 -2.2666 -4.1931 31 1 3.8933 -2.2684 -5.0187 32 1 3.9630 1.9563 -2.8905 33 1 6.9696 2.4985 -3.5985 34 1 5.6371 3.7680 -3.4816 35 1 5.2508 3.1407 -1.0539 36 1 6.5832 1.8708 -1.1693 37 1 5.1973 -2.3040 -0.0785 38 1 2.6524 -2.9774 1.6259 39 1 4.2723 -3.8554 1.7024 40 1 5.4146 -1.6917 2.3735 41 1 3.7953 -0.8124 2.2973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065894493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:17 Heat of formation + Delta-G solvation = 52.178767 kcal Electronic energy + Delta-G solvation = -21299.282809 eV Core-core repulsion = 18375.297822 eV Total energy + Delta-G solvation = -2923.984987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60701 -37.90899 -36.11711 -35.96537 -32.85646 -31.56998 -30.80879 -26.22059 -23.97529 -22.05562 -22.03634 -21.80163 -21.32229 -20.74600 -19.98257 -18.72380 -16.73330 -16.08775 -15.83418 -15.35971 -14.90301 -14.33282 -14.10045 -13.72783 -13.42527 -13.13752 -12.73808 -12.39149 -12.26321 -12.03392 -11.47961 -11.30104 -11.22437 -11.06152 -10.85244 -10.66242 -10.59255 -10.31282 -10.19412 -10.02034 -9.92973 -9.88296 -9.64094 -9.50366 -9.34602 -8.53399 -8.23735 -7.34042 -6.14735 -3.93669 3.35320 3.51029 3.63301 3.85438 4.06820 4.26022 4.43087 4.52721 4.70118 4.81409 5.10550 5.16516 5.20977 5.35133 5.38488 5.48963 5.53414 5.54835 5.66437 5.69961 5.78408 5.81754 5.82159 5.87098 5.93994 6.08400 6.14144 6.16260 6.20786 6.31612 6.36601 6.40123 6.40606 6.49366 6.73490 6.83433 6.89442 6.95517 7.90204 8.09043 8.85664 9.02642 9.48816 9.92571 10.90934 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.009045 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.661232 B = 3095.006371 C = 3444.908127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.092 3.908 3 Si 0.906 3.094 4 H -0.254 1.254 5 H -0.313 1.313 6 H -0.275 1.275 7 C -0.344 4.344 8 H 0.092 0.908 9 N -0.444 5.444 10 C 0.471 3.529 11 O -0.534 6.534 12 C -0.131 4.131 13 C -0.005 4.005 14 C -0.120 4.120 15 C -0.192 4.192 16 C -0.182 4.182 17 C -0.129 4.129 18 C -0.187 4.187 19 C -0.187 4.187 20 C 0.066 3.934 21 C -0.178 4.178 22 C -0.198 4.198 23 H 0.270 0.730 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.123 0.877 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.595 -0.516 -3.780 14.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.116 4.116 3 Si 0.737 3.263 4 H -0.180 1.180 5 H -0.243 1.243 6 H -0.201 1.201 7 C -0.470 4.470 8 H 0.109 0.891 9 N -0.165 5.165 10 C 0.261 3.739 11 O -0.415 6.415 12 C -0.172 4.172 13 C -0.023 4.023 14 C -0.138 4.138 15 C -0.229 4.229 16 C -0.219 4.219 17 C -0.147 4.147 18 C -0.224 4.224 19 C -0.224 4.224 20 C -0.040 4.040 21 C -0.216 4.216 22 C -0.237 4.237 23 H 0.080 0.920 24 H 0.098 0.902 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.141 0.859 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.139 0.861 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 12.993 -0.117 -4.139 13.637 hybrid contribution 0.397 0.728 0.309 0.885 sum 13.389 0.611 -3.830 13.940 Atomic orbital electron populations 1.69739 1.06795 1.27931 1.46170 1.25306 0.94844 0.99243 0.92219 0.86438 0.79210 0.82375 0.78302 1.17986 1.24308 1.20055 1.18684 0.82829 0.95473 1.49967 0.89079 1.43167 1.06944 1.45425 1.20979 1.20148 0.89543 0.83238 0.80996 1.90468 1.55470 1.43192 1.52359 1.21757 0.96673 1.00593 0.98148 1.20022 0.97033 0.92233 0.93062 1.22393 1.01175 0.97475 0.92802 1.23012 1.00256 1.04427 0.95206 1.22856 1.02982 0.91741 1.04292 1.22498 0.98589 0.91930 1.01658 1.22994 1.00991 1.00101 0.98268 1.22901 1.03686 1.04290 0.91509 1.21820 0.94776 0.99952 0.87449 1.23124 1.02112 0.92896 1.03425 1.23235 1.01095 0.99841 0.99556 0.92015 0.90209 0.90430 0.91662 0.85935 0.89499 0.89614 0.89475 0.89181 0.86096 0.89361 0.89444 0.89522 0.89178 0.87310 0.87359 0.89681 0.89769 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.73 13.96 55.50 0.77 -25.96 16 2 C 0.09 2.70 4.88 -17.47 -0.09 2.61 16 3 Si 0.91 23.97 24.85 -169.99 -4.22 19.75 16 4 H -0.25 -6.85 5.66 56.52 0.32 -6.53 16 5 H -0.31 -8.35 7.11 56.52 0.40 -7.95 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.34 -9.56 8.58 -14.93 -0.13 -9.68 16 8 H 0.09 2.68 6.95 -52.49 -0.36 2.32 16 9 N -0.44 -10.46 2.46 -107.73 -0.27 -10.73 16 10 C 0.47 10.65 5.31 -10.98 -0.06 10.59 16 11 O -0.53 -13.70 8.16 5.54 0.05 -13.65 16 12 C -0.13 -2.27 3.68 -27.88 -0.10 -2.37 16 13 C 0.00 -0.08 2.43 -90.62 -0.22 -0.30 16 14 C -0.12 -2.00 3.99 -90.62 -0.36 -2.36 16 15 C -0.19 -2.60 10.18 -26.70 -0.27 -2.87 16 16 C -0.18 -2.68 9.75 -26.69 -0.26 -2.94 16 17 C -0.13 -2.23 4.12 -90.62 -0.37 -2.61 16 18 C -0.19 -2.63 10.18 -26.69 -0.27 -2.90 16 19 C -0.19 -2.97 9.73 -26.69 -0.26 -3.23 16 20 C 0.07 1.24 6.01 -67.93 -0.41 0.83 16 21 C -0.18 -3.09 9.85 -26.70 -0.26 -3.36 16 22 C -0.20 -3.47 10.24 -26.69 -0.27 -3.74 16 23 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 24 H 0.08 1.21 6.85 -51.93 -0.36 0.86 16 25 H 0.08 1.26 7.21 -51.93 -0.37 0.88 16 26 H 0.07 0.90 7.66 -51.93 -0.40 0.50 16 27 H 0.12 2.46 6.71 -51.93 -0.35 2.11 16 28 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.09 1.03 8.05 -51.93 -0.42 0.62 16 30 H 0.09 1.17 7.62 -51.93 -0.40 0.77 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 32 H 0.12 2.55 6.09 -51.93 -0.32 2.23 16 33 H 0.09 1.08 8.05 -51.93 -0.42 0.66 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.02 16 36 H 0.09 1.30 7.63 -51.93 -0.40 0.90 16 37 H 0.11 1.70 6.78 -51.93 -0.35 1.35 16 38 H 0.11 2.16 6.51 -51.93 -0.34 1.82 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -31.32 319.66 -8.84 -40.16 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.65 Total: 7.93 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -3.34 Total: -22.32 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.51 Total: -36.68 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.05 Total: -13.65 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.22 Total: 19.75 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.32 -8.84 -40.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.341 kcal (2) G-P(sol) polarization free energy of solvation -31.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds