Wall clock time and date at job start Sun Mar 29 2020 23:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99611 * 2 1 4 4 H 1.48500 * 109.46852 * 275.48451 * 3 2 1 5 5 H 1.48491 * 109.47417 * 35.48226 * 3 2 1 6 6 H 1.48498 * 109.47030 * 155.48698 * 3 2 1 7 7 C 1.38949 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00056 * 342.30606 * 7 2 1 9 9 N 1.37098 * 120.00253 * 162.31330 * 7 2 1 10 10 C 1.34773 * 119.99478 * 314.58347 * 9 7 2 11 11 O 1.21297 * 120.00285 * 0.02562 * 10 9 7 12 12 C 1.50705 * 119.99779 * 179.97438 * 10 9 7 13 13 C 1.53005 * 109.46927 * 181.48858 * 12 10 9 14 14 C 1.52997 * 109.46979 * 301.29660 * 13 12 10 15 15 C 1.52997 * 117.50103 * 231.25481 * 14 13 12 16 16 C 1.53002 * 117.49974 * 299.91482 * 14 13 12 17 17 C 1.52993 * 109.47383 * 61.29902 * 13 12 10 18 18 C 1.52998 * 117.50296 * 129.19028 * 17 13 12 19 19 C 1.53006 * 117.49809 * 60.52990 * 17 13 12 20 20 C 1.46497 * 120.00332 * 134.58835 * 9 7 2 21 21 C 1.52997 * 117.49984 * 10.69783 * 20 9 7 22 22 C 1.53001 * 117.49639 * 302.03960 * 20 9 7 23 23 H 0.96996 * 120.00602 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46694 * 61.49080 * 12 10 9 25 25 H 1.09001 * 109.47094 * 301.48713 * 12 10 9 26 26 H 1.08995 * 109.46610 * 181.29950 * 13 12 10 27 27 H 1.09003 * 115.54978 * 85.58546 * 14 13 12 28 28 H 1.09001 * 117.50369 * 215.00501 * 15 14 13 29 29 H 1.09004 * 117.49969 * 0.02575 * 15 14 13 30 30 H 1.09001 * 117.50155 * 359.97438 * 16 14 13 31 31 H 1.09003 * 117.49514 * 144.97410 * 16 14 13 32 32 H 1.09004 * 115.55049 * 274.86144 * 17 13 12 33 33 H 1.09003 * 117.49521 * 0.02562 * 18 17 13 34 34 H 1.08996 * 117.50339 * 145.02237 * 18 17 13 35 35 H 1.09007 * 117.49569 * 214.97843 * 19 17 13 36 36 H 1.08991 * 117.50003 * 359.97438 * 19 17 13 37 37 H 1.08995 * 115.55088 * 156.37088 * 20 9 7 38 38 H 1.09005 * 117.49997 * 0.02562 * 21 20 9 39 39 H 1.08994 * 117.50255 * 145.02357 * 21 20 9 40 40 H 1.09001 * 117.49689 * 214.97866 * 22 20 9 41 41 H 1.09004 * 117.49946 * 359.97409 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.3796 2.1133 -1.3937 5 1 1.5082 2.6165 0.8126 6 1 3.5987 1.4096 0.5809 7 6 2.0089 -1.2033 0.0005 8 1 1.5073 -2.1164 0.2852 9 7 3.3313 -1.2315 -0.3602 10 6 3.7457 -0.5624 -1.4542 11 8 2.9488 0.0651 -2.1195 12 6 5.1994 -0.5929 -1.8505 13 6 5.4066 0.2707 -3.0964 14 6 4.5293 -0.2563 -4.2338 15 6 5.2043 -0.5249 -5.5803 16 6 4.7633 -1.6953 -4.6978 17 6 5.0213 1.7179 -2.7837 18 6 6.0310 2.8107 -3.1405 19 6 5.7981 2.4321 -1.6757 20 6 4.2939 -1.9889 0.4435 21 6 3.7358 -2.9249 1.5175 22 6 4.4249 -1.6194 1.9225 23 1 -0.4851 0.8400 -0.0004 24 1 5.4956 -1.6194 -2.0665 25 1 5.8069 -0.2036 -1.0335 26 1 6.4536 0.2301 -3.3965 27 1 3.5055 0.1175 -4.2497 28 1 4.6247 -0.3279 -6.4821 29 1 6.2735 -0.3267 -5.6558 30 1 5.5424 -2.2666 -4.1931 31 1 3.8933 -2.2684 -5.0187 32 1 3.9630 1.9563 -2.8905 33 1 6.9696 2.4985 -3.5985 34 1 5.6371 3.7680 -3.4816 35 1 5.2508 3.1407 -1.0539 36 1 6.5832 1.8708 -1.1693 37 1 5.1973 -2.3040 -0.0785 38 1 2.6524 -2.9774 1.6259 39 1 4.2723 -3.8554 1.7024 40 1 5.4146 -1.6917 2.3735 41 1 3.7953 -0.8124 2.2973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065894493.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:47:17 Heat of formation + Delta-G solvation = 34.193405 kcal Electronic energy + Delta-G solvation = -21300.062713 eV Core-core repulsion = 18375.297822 eV Total energy + Delta-G solvation = -2924.764891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.18530 -39.31056 -37.70493 -37.13069 -34.85991 -33.39395 -32.28899 -27.89255 -25.66907 -23.36096 -23.18031 -23.06745 -22.81211 -21.97565 -21.53934 -20.39113 -18.54629 -17.69925 -17.25649 -17.03209 -16.15783 -15.95727 -15.72926 -15.18273 -15.04595 -14.75024 -14.34029 -14.13708 -13.62034 -13.41890 -13.34118 -12.81220 -12.46608 -12.35946 -12.29026 -12.17717 -12.09177 -12.03387 -11.81111 -11.57834 -11.42900 -11.19881 -11.07718 -10.76529 -10.68157 -10.53091 -10.00485 -9.22031 -8.39756 -6.15625 1.21403 1.33995 1.46027 2.07838 2.40863 2.74842 2.91079 2.99607 3.10176 3.31256 3.59838 3.94013 3.98532 4.08657 4.15129 4.18367 4.23080 4.25692 4.34464 4.35319 4.47223 4.55355 4.62531 4.75719 4.83111 4.87731 4.90759 4.96626 5.00551 5.08006 5.10554 5.25663 5.29054 5.31464 5.34339 5.48181 5.50440 5.65511 5.74397 5.93387 6.86373 7.02566 7.44710 8.04631 8.69334 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.016897 B = 0.009045 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.661232 B = 3095.006371 C = 3444.908127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.040 3.960 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.321 1.321 6 H -0.257 1.257 7 C -0.327 4.327 8 H 0.061 0.939 9 N -0.466 5.466 10 C 0.464 3.536 11 O -0.570 6.570 12 C -0.123 4.123 13 C 0.004 3.996 14 C -0.148 4.148 15 C -0.165 4.165 16 C -0.182 4.182 17 C -0.157 4.157 18 C -0.157 4.157 19 C -0.194 4.194 20 C 0.050 3.950 21 C -0.175 4.175 22 C -0.189 4.189 23 H 0.268 0.732 24 H 0.111 0.889 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.114 0.886 37 H 0.155 0.845 38 H 0.069 0.931 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.892 -1.330 -4.223 19.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.162 4.162 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.252 1.252 6 H -0.181 1.181 7 C -0.455 4.455 8 H 0.079 0.921 9 N -0.188 5.188 10 C 0.256 3.744 11 O -0.453 6.453 12 C -0.163 4.163 13 C -0.014 4.014 14 C -0.166 4.166 15 C -0.202 4.202 16 C -0.219 4.219 17 C -0.175 4.175 18 C -0.194 4.194 19 C -0.231 4.231 20 C -0.054 4.054 21 C -0.213 4.213 22 C -0.227 4.227 23 H 0.077 0.923 24 H 0.129 0.871 25 H 0.118 0.882 26 H 0.124 0.876 27 H 0.090 0.910 28 H 0.105 0.895 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.139 0.861 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.132 0.868 37 H 0.172 0.828 38 H 0.087 0.913 39 H 0.146 0.854 40 H 0.148 0.852 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 18.323 -0.947 -4.566 18.907 hybrid contribution -1.291 0.895 0.383 1.617 sum 17.031 -0.052 -4.183 17.538 Atomic orbital electron populations 1.69841 1.08137 1.28192 1.49805 1.25949 0.95316 1.01973 0.92997 0.85550 0.78883 0.79371 0.76989 1.19827 1.25195 1.18090 1.18543 0.85346 0.93843 1.47761 0.92147 1.43402 1.06193 1.46683 1.22526 1.21281 0.91984 0.81277 0.79904 1.90478 1.57294 1.44345 1.53201 1.21822 0.92008 1.02999 0.99490 1.20035 0.98709 0.90683 0.91976 1.22175 0.99528 0.99278 0.95667 1.23091 1.01552 1.02010 0.93516 1.22935 1.03171 0.91148 1.04645 1.22322 0.96703 0.94095 1.04380 1.23089 1.00778 0.98797 0.96696 1.22994 1.03729 1.04059 0.92273 1.22236 0.95192 1.00100 0.87903 1.23144 1.00440 0.94893 1.02815 1.23279 1.02619 0.98468 0.98367 0.92326 0.87132 0.88210 0.87589 0.91047 0.89455 0.86640 0.87112 0.90734 0.91309 0.86085 0.89367 0.91429 0.86823 0.82762 0.91253 0.85379 0.85155 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -60.07 13.96 21.66 0.30 -59.77 16 2 C 0.04 2.47 4.88 84.93 0.41 2.89 16 3 Si 0.96 52.22 24.85 68.60 1.70 53.92 16 4 H -0.27 -15.40 5.66 99.48 0.56 -14.84 16 5 H -0.32 -17.54 7.11 99.48 0.71 -16.83 16 6 H -0.26 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.33 -18.94 8.58 84.04 0.72 -18.21 16 8 H 0.06 3.78 6.95 -2.91 -0.02 3.76 16 9 N -0.47 -21.74 2.46 -613.14 -1.51 -23.25 16 10 C 0.46 20.63 5.31 87.66 0.47 21.09 16 11 O -0.57 -30.24 8.16 -3.08 -0.03 -30.27 16 12 C -0.12 -3.77 3.68 29.85 0.11 -3.66 16 13 C 0.00 0.13 2.43 -10.80 -0.03 0.10 16 14 C -0.15 -4.73 3.99 -10.80 -0.04 -4.77 16 15 C -0.16 -3.92 10.18 30.62 0.31 -3.61 16 16 C -0.18 -4.89 9.75 30.62 0.30 -4.59 16 17 C -0.16 -5.20 4.12 -10.79 -0.04 -5.24 16 18 C -0.16 -3.89 10.18 30.62 0.31 -3.58 16 19 C -0.19 -5.62 9.73 30.62 0.30 -5.32 16 20 C 0.05 1.73 6.01 44.99 0.27 2.00 16 21 C -0.18 -5.72 9.85 30.62 0.30 -5.42 16 22 C -0.19 -6.03 10.24 30.62 0.31 -5.72 16 23 H 0.27 16.65 8.31 -92.71 -0.77 15.88 16 24 H 0.11 2.72 6.85 -2.39 -0.02 2.70 16 25 H 0.10 2.66 7.21 -2.39 -0.02 2.65 16 26 H 0.11 2.23 7.66 -2.39 -0.02 2.21 16 27 H 0.07 3.02 6.71 -2.39 -0.02 3.01 16 28 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.12 2.11 8.05 -2.39 -0.02 2.09 16 30 H 0.11 2.44 7.62 -2.39 -0.02 2.42 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.07 3.03 6.09 -2.38 -0.01 3.01 16 33 H 0.12 2.24 8.05 -2.39 -0.02 2.22 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.11 2.73 7.63 -2.39 -0.02 2.71 16 37 H 0.16 3.89 6.78 -2.39 -0.02 3.88 16 38 H 0.07 2.82 6.51 -2.38 -0.02 2.81 16 39 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 Total: -1.00 -76.01 319.66 5.04 -70.97 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.86 Total: 22.43 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 3.70 Total: -34.04 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.21 Total: -83.01 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.03 Total: -30.27 kcal Atomic # 14 Polarization: 52.22 SS G_CDS: 1.70 Total: 53.92 kcal Total: -76.01 5.04 -70.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065894493.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.163 kcal (2) G-P(sol) polarization free energy of solvation -76.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds