Wall clock time and date at job start Mon Mar 30 2020 00:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38167 * 120.02876 * 2 1 4 4 C 1.38242 * 120.05578 * 179.97438 * 3 2 1 5 5 C 1.38284 * 120.11333 * 359.97438 * 4 3 2 6 6 C 1.38126 * 120.05420 * 0.02562 * 5 4 3 7 7 C 1.38713 * 120.03117 * 179.97438 * 2 1 3 8 8 O 1.35901 * 120.04872 * 0.02562 * 7 2 1 9 9 C 1.42908 * 116.99625 * 180.02562 * 8 7 2 10 10 C 1.52997 * 109.47163 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47306 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47480 * 180.02562 * 11 10 9 13 13 C 1.46893 * 111.00312 * 179.97438 * 12 11 10 14 14 H 1.09006 * 109.47105 * 35.00020 * 13 12 11 15 15 C 1.52999 * 109.47231 * 275.00135 * 13 12 11 16 16 C 1.50701 * 109.47363 * 154.99602 * 13 12 11 17 17 H 1.07998 * 119.99707 * 5.46705 * 16 13 12 18 18 C 1.37871 * 120.00186 * 185.46269 * 16 13 12 19 19 N 1.31514 * 120.00406 * 9.55158 * 18 16 13 20 20 Si 1.86800 * 120.00000 * 189.55646 * 18 16 13 21 21 H 1.48502 * 109.47429 * 84.99409 * 20 18 16 22 22 H 1.48499 * 109.47217 * 204.99538 * 20 18 16 23 23 H 1.48501 * 109.47127 * 324.99219 * 20 18 16 24 24 H 1.08999 * 109.47631 * 270.02484 * 1 2 3 25 25 H 1.09001 * 109.47087 * 30.03044 * 1 2 3 26 26 H 1.09007 * 109.46812 * 150.02613 * 1 2 3 27 27 H 1.08004 * 119.97174 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.93914 * 180.02562 * 4 3 2 29 29 H 1.07997 * 119.97362 * 180.28514 * 5 4 3 30 30 H 1.08001 * 120.02400 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47179 * 300.00290 * 9 8 7 32 32 H 1.09002 * 109.46815 * 60.00450 * 9 8 7 33 33 H 1.09001 * 109.47293 * 300.00673 * 10 9 8 34 34 H 1.09002 * 109.46974 * 60.00442 * 10 9 8 35 35 H 1.09007 * 109.46646 * 299.99818 * 11 10 9 36 36 H 1.08995 * 109.47310 * 59.99720 * 11 10 9 37 37 H 1.00902 * 110.99861 * 56.04144 * 12 11 10 38 38 H 1.08999 * 109.47069 * 303.68846 * 15 13 12 39 39 H 1.08991 * 109.47195 * 63.69123 * 15 13 12 40 40 H 1.09007 * 109.46895 * 183.69192 * 15 13 12 41 41 H 0.96999 * 120.00249 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 0.0016 6 6 3.5886 -1.1976 0.0016 7 6 2.2012 -1.2009 0.0005 8 8 1.5233 -2.3788 0.0005 9 6 2.3034 -3.5762 0.0017 10 6 1.3732 -4.7909 0.0009 11 6 2.2083 -6.0728 0.0027 12 7 1.3152 -7.2392 0.0013 13 6 2.0839 -8.4909 0.0024 14 1 2.9905 -8.3600 0.5933 15 6 2.4602 -8.8596 -1.4340 16 6 1.2486 -9.5929 0.6017 17 1 0.2181 -9.4066 0.8657 18 6 1.8000 -10.8388 0.8127 19 7 3.0951 -11.0176 0.6701 20 14 0.7074 -12.2731 1.3011 21 1 0.1289 -12.8925 0.0817 22 1 1.5134 -13.2822 2.0341 23 1 -0.3888 -11.7848 2.1760 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6584 2.1316 -0.0004 28 1 4.1194 2.1330 0.0010 29 1 5.3551 0.0041 0.0067 30 1 4.1314 -2.1313 0.0029 31 1 2.9330 -3.6005 -0.8878 32 1 2.9315 -3.5997 0.8922 33 1 0.7432 -4.7667 0.8900 34 1 0.7454 -4.7671 -0.8899 35 1 2.8385 -6.0972 -0.8864 36 1 2.8359 -6.0964 0.8936 37 1 0.6791 -7.2065 -0.7812 38 1 1.5569 -8.9263 -2.0405 39 1 3.1182 -8.0942 -1.8451 40 1 2.9734 -9.8213 -1.4397 41 1 3.4830 -11.8941 0.8189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067407243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:31 Heat of formation + Delta-G solvation = -31.123105 kcal Electronic energy + Delta-G solvation = -18863.767250 eV Core-core repulsion = 15936.170023 eV Total energy + Delta-G solvation = -2927.597227 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.32572 -37.73635 -36.30697 -33.48965 -32.86785 -31.47105 -30.03445 -28.12107 -26.86795 -25.18293 -24.61852 -22.17532 -21.79294 -20.79358 -20.19175 -18.10069 -16.34418 -16.23501 -16.13079 -15.76868 -14.76005 -14.69053 -14.53048 -14.07850 -13.60220 -13.32961 -13.29045 -13.13136 -12.45501 -12.42881 -12.02765 -11.90059 -11.65235 -11.55138 -11.44546 -11.18351 -10.94009 -10.86549 -10.76680 -10.57499 -10.37798 -10.18589 -9.80569 -9.06675 -9.00246 -8.33591 -8.23340 -7.29274 -6.01070 -4.00595 1.14599 1.29620 3.11580 3.33528 3.39543 3.43557 3.59287 4.44698 4.61573 4.64776 4.86668 4.97498 4.99842 5.09954 5.12329 5.31216 5.32435 5.37950 5.50093 5.56744 5.58348 5.65502 5.70364 5.85155 6.01063 6.06444 6.20283 6.28878 6.36036 6.39934 6.45721 6.60382 6.66733 6.73781 7.00439 7.30625 7.35893 7.57814 7.88102 8.19888 8.51765 8.59817 9.05862 9.63146 11.08352 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.044010 B = 0.002806 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.066034 B = 9975.391004 C =10334.044474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.122 4.122 3 C -0.086 4.086 4 C -0.161 4.161 5 C -0.086 4.086 6 C -0.207 4.207 7 C 0.134 3.866 8 O -0.311 6.311 9 C 0.061 3.939 10 C -0.114 4.114 11 C 0.065 3.935 12 N -0.683 5.683 13 C 0.209 3.791 14 H 0.041 0.959 15 C -0.163 4.163 16 C -0.498 4.498 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.896 5.896 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.289 1.289 23 H -0.274 1.274 24 H 0.067 0.933 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.126 0.874 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.019 0.981 36 H 0.067 0.933 37 H 0.325 0.675 38 H 0.030 0.970 39 H 0.009 0.991 40 H 0.071 0.929 41 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.292 22.531 -2.748 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.122 4.122 3 C -0.104 4.104 4 C -0.179 4.179 5 C -0.105 4.105 6 C -0.226 4.226 7 C 0.088 3.912 8 O -0.224 6.224 9 C -0.014 4.014 10 C -0.152 4.152 11 C -0.066 4.066 12 N -0.312 5.312 13 C 0.101 3.899 14 H 0.058 0.942 15 C -0.223 4.223 16 C -0.537 4.537 17 H 0.081 0.919 18 C -0.144 4.144 19 N -0.536 5.536 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.215 1.215 23 H -0.199 1.199 24 H 0.086 0.914 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.144 0.856 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.147 0.853 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.037 0.963 36 H 0.085 0.915 37 H 0.141 0.859 38 H 0.049 0.951 39 H 0.028 0.972 40 H 0.090 0.910 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.137 22.328 -2.031 22.420 hybrid contribution 0.294 -0.978 -0.726 1.253 sum 0.431 21.349 -2.757 21.531 Atomic orbital electron populations 1.20609 0.90509 1.02738 1.02332 1.19309 0.96618 0.90414 1.05894 1.20869 0.94134 0.96700 0.98695 1.21008 0.94232 0.97996 1.04653 1.20935 0.99761 0.91907 0.97856 1.21327 0.93148 0.99645 1.08432 1.18891 0.90420 0.85962 0.95902 1.86067 1.36085 1.12257 1.88016 1.22882 0.94663 0.82554 1.01316 1.21541 0.98436 0.91369 1.03890 1.21753 0.94853 0.90004 0.99960 1.60785 1.19790 1.02054 1.48605 1.19204 0.93629 0.85199 0.91828 0.94153 1.22389 0.98768 1.01455 0.99665 1.21109 0.98113 0.94220 1.40228 0.91921 1.24950 0.94882 0.98921 0.95615 1.69964 1.10043 1.23164 1.50385 0.86572 0.80584 0.82134 0.78480 1.20714 1.21453 1.19891 0.91401 0.91883 0.90975 0.85614 0.86113 0.85944 0.85300 0.92201 0.91861 0.90094 0.91354 0.96271 0.91472 0.85855 0.95098 0.97155 0.90968 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.79 36.00 0.35 -0.66 16 2 C -0.12 -1.37 5.89 -104.47 -0.62 -1.98 16 3 C -0.09 -0.82 9.70 -39.61 -0.38 -1.20 16 4 C -0.16 -1.47 10.04 -39.56 -0.40 -1.87 16 5 C -0.09 -0.85 10.04 -39.61 -0.40 -1.25 16 6 C -0.21 -2.35 9.04 -39.44 -0.36 -2.70 16 7 C 0.13 1.69 6.66 -39.22 -0.26 1.43 16 8 O -0.31 -4.19 9.18 -19.43 -0.18 -4.37 16 9 C 0.06 0.77 4.74 37.16 0.18 0.95 16 10 C -0.11 -1.63 5.84 -26.73 -0.16 -1.78 16 11 C 0.06 1.11 5.48 -3.83 -0.02 1.09 16 12 N -0.68 -14.35 6.23 -107.95 -0.67 -15.02 16 13 C 0.21 5.23 2.44 -68.87 -0.17 5.06 16 14 H 0.04 1.12 7.74 -51.93 -0.40 0.72 16 15 C -0.16 -3.84 9.04 37.16 0.34 -3.50 16 16 C -0.50 -13.84 8.76 -34.44 -0.30 -14.14 16 17 H 0.06 1.76 7.83 -52.49 -0.41 1.34 16 18 C 0.06 1.60 5.17 -17.82 -0.09 1.51 16 19 N -0.90 -25.91 12.16 55.43 0.67 -25.23 16 20 Si 0.89 21.53 29.55 -169.99 -5.02 16.51 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 24 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 26 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 27 H 0.13 0.89 8.06 -52.48 -0.42 0.46 16 28 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 29 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 31 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 32 H 0.06 0.75 7.66 -51.93 -0.40 0.36 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.02 0.32 7.50 -51.92 -0.39 -0.06 16 36 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 37 H 0.33 6.41 8.43 -39.29 -0.33 6.08 16 38 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 39 H 0.01 0.20 7.54 -51.93 -0.39 -0.19 16 40 H 0.07 1.87 6.83 -51.92 -0.35 1.52 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 337.25 15.07 5.08 5.08 Total: -1.00 -29.64 337.25 -9.13 -38.77 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.73 Total: 3.31 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -2.29 Total: -19.05 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.00 Total: -40.25 kcal Atomic # 8 Polarization: -4.19 SS G_CDS: -0.18 Total: -4.37 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.64 -9.13 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.646 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds