Wall clock time and date at job start Mon Mar 30 2020 00:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38167 * 120.02876 * 2 1 4 4 C 1.38242 * 120.05578 * 179.97438 * 3 2 1 5 5 C 1.38284 * 120.11333 * 359.97438 * 4 3 2 6 6 C 1.38126 * 120.05420 * 0.02562 * 5 4 3 7 7 C 1.38713 * 120.03117 * 179.97438 * 2 1 3 8 8 O 1.35901 * 120.04872 * 0.02562 * 7 2 1 9 9 C 1.42908 * 116.99625 * 180.02562 * 8 7 2 10 10 C 1.52997 * 109.47163 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47306 * 180.02562 * 10 9 8 12 12 N 1.46899 * 109.47480 * 180.02562 * 11 10 9 13 13 C 1.46893 * 111.00312 * 179.97438 * 12 11 10 14 14 H 1.09006 * 109.47105 * 35.00020 * 13 12 11 15 15 C 1.52999 * 109.47231 * 275.00135 * 13 12 11 16 16 C 1.50701 * 109.47363 * 154.99602 * 13 12 11 17 17 H 1.07998 * 119.99707 * 5.46705 * 16 13 12 18 18 C 1.37871 * 120.00186 * 185.46269 * 16 13 12 19 19 N 1.31514 * 120.00406 * 9.55158 * 18 16 13 20 20 Si 1.86800 * 120.00000 * 189.55646 * 18 16 13 21 21 H 1.48502 * 109.47429 * 84.99409 * 20 18 16 22 22 H 1.48499 * 109.47217 * 204.99538 * 20 18 16 23 23 H 1.48501 * 109.47127 * 324.99219 * 20 18 16 24 24 H 1.08999 * 109.47631 * 270.02484 * 1 2 3 25 25 H 1.09001 * 109.47087 * 30.03044 * 1 2 3 26 26 H 1.09007 * 109.46812 * 150.02613 * 1 2 3 27 27 H 1.08004 * 119.97174 * 359.97438 * 3 2 1 28 28 H 1.07999 * 119.93914 * 180.02562 * 4 3 2 29 29 H 1.07997 * 119.97362 * 180.28514 * 5 4 3 30 30 H 1.08001 * 120.02400 * 180.02562 * 6 5 4 31 31 H 1.08998 * 109.47179 * 300.00290 * 9 8 7 32 32 H 1.09002 * 109.46815 * 60.00450 * 9 8 7 33 33 H 1.09001 * 109.47293 * 300.00673 * 10 9 8 34 34 H 1.09002 * 109.46974 * 60.00442 * 10 9 8 35 35 H 1.09007 * 109.46646 * 299.99818 * 11 10 9 36 36 H 1.08995 * 109.47310 * 59.99720 * 11 10 9 37 37 H 1.00902 * 110.99861 * 56.04144 * 12 11 10 38 38 H 1.08999 * 109.47069 * 303.68846 * 15 13 12 39 39 H 1.08991 * 109.47195 * 63.69123 * 15 13 12 40 40 H 1.09007 * 109.46895 * 183.69192 * 15 13 12 41 41 H 0.96999 * 120.00249 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5808 1.1969 0.0005 5 6 4.2752 0.0010 0.0016 6 6 3.5886 -1.1976 0.0016 7 6 2.2012 -1.2009 0.0005 8 8 1.5233 -2.3788 0.0005 9 6 2.3034 -3.5762 0.0017 10 6 1.3732 -4.7909 0.0009 11 6 2.2083 -6.0728 0.0027 12 7 1.3152 -7.2392 0.0013 13 6 2.0839 -8.4909 0.0024 14 1 2.9905 -8.3600 0.5933 15 6 2.4602 -8.8596 -1.4340 16 6 1.2486 -9.5929 0.6017 17 1 0.2181 -9.4066 0.8657 18 6 1.8000 -10.8388 0.8127 19 7 3.0951 -11.0176 0.6701 20 14 0.7074 -12.2731 1.3011 21 1 0.1289 -12.8925 0.0817 22 1 1.5134 -13.2822 2.0341 23 1 -0.3888 -11.7848 2.1760 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3633 -0.8903 -0.5135 27 1 1.6584 2.1316 -0.0004 28 1 4.1194 2.1330 0.0010 29 1 5.3551 0.0041 0.0067 30 1 4.1314 -2.1313 0.0029 31 1 2.9330 -3.6005 -0.8878 32 1 2.9315 -3.5997 0.8922 33 1 0.7432 -4.7667 0.8900 34 1 0.7454 -4.7671 -0.8899 35 1 2.8385 -6.0972 -0.8864 36 1 2.8359 -6.0964 0.8936 37 1 0.6791 -7.2065 -0.7812 38 1 1.5569 -8.9263 -2.0405 39 1 3.1182 -8.0942 -1.8451 40 1 2.9734 -9.8213 -1.4397 41 1 3.4830 -11.8941 0.8189 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067407243.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:31 Heat of formation + Delta-G solvation = -48.037354 kcal Electronic energy + Delta-G solvation = -18864.500707 eV Core-core repulsion = 15936.170023 eV Total energy + Delta-G solvation = -2928.330684 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.17530 -38.69314 -37.91525 -35.13439 -33.79350 -33.06947 -30.93022 -29.70154 -27.64263 -27.21698 -25.92906 -23.26217 -22.64504 -22.16613 -21.78380 -19.00395 -18.31217 -17.35810 -17.06051 -16.68014 -16.53684 -16.07201 -15.38756 -15.36899 -15.10028 -14.52491 -14.37615 -14.01067 -13.96890 -13.61777 -13.26902 -13.15271 -13.11151 -12.88621 -12.74079 -12.51858 -12.36731 -12.27818 -12.21843 -12.11883 -11.74292 -11.65620 -11.55147 -11.08605 -10.47054 -9.76258 -9.06506 -9.00866 -8.13239 -6.20505 0.38257 0.50405 1.43351 1.43736 1.54055 2.15933 2.44736 2.82294 3.16880 3.60828 3.85712 3.89693 3.94208 4.12742 4.19767 4.23334 4.37243 4.42919 4.46163 4.56016 4.63687 4.70649 4.74846 4.80164 4.83078 4.83691 4.99064 5.01686 5.12682 5.19098 5.33372 5.40344 5.43803 5.54276 5.61214 5.63609 5.74929 5.91385 6.21221 6.46118 6.64006 6.83530 6.93357 7.47978 8.95003 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.044010 B = 0.002806 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.066034 B = 9975.391004 C =10334.044474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.138 4.138 3 C -0.088 4.088 4 C -0.159 4.159 5 C -0.094 4.094 6 C -0.221 4.221 7 C 0.104 3.896 8 O -0.325 6.325 9 C 0.067 3.933 10 C -0.101 4.101 11 C 0.068 3.932 12 N -0.690 5.690 13 C 0.213 3.787 14 H 0.007 0.993 15 C -0.151 4.151 16 C -0.518 4.518 17 H 0.055 0.945 18 C 0.010 3.990 19 N -0.925 5.925 20 Si 0.958 3.042 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.270 1.270 24 H 0.069 0.931 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.152 0.848 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.132 0.868 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.057 0.943 37 H 0.334 0.666 38 H 0.041 0.959 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 24.126 -3.130 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.139 4.139 3 C -0.106 4.106 4 C -0.177 4.177 5 C -0.112 4.112 6 C -0.239 4.239 7 C 0.059 3.941 8 O -0.240 6.240 9 C -0.008 4.008 10 C -0.139 4.139 11 C -0.062 4.062 12 N -0.320 5.320 13 C 0.105 3.895 14 H 0.025 0.975 15 C -0.211 4.211 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.564 5.564 20 Si 0.783 3.217 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.195 1.195 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.170 0.830 28 H 0.166 0.834 29 H 0.161 0.839 30 H 0.150 0.850 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.151 0.849 38 H 0.060 0.940 39 H 0.050 0.950 40 H 0.062 0.938 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.148 23.945 -2.420 24.067 hybrid contribution 0.419 -1.351 -0.600 1.536 sum 0.271 22.594 -3.020 22.797 Atomic orbital electron populations 1.20613 0.89823 1.03024 1.02531 1.19646 0.97477 0.90670 1.06114 1.21230 0.94610 0.97077 0.97673 1.21407 0.94355 0.98899 1.03055 1.21270 1.00992 0.91652 0.97285 1.21504 0.92924 1.00612 1.08893 1.19203 0.91182 0.85923 0.97810 1.86010 1.36608 1.12699 1.88643 1.22734 0.94096 0.81974 1.01992 1.21319 0.98112 0.90692 1.03727 1.21731 0.94731 0.89868 0.99822 1.60622 1.20287 1.01784 1.49318 1.18963 0.92229 0.86437 0.91920 0.97545 1.22203 0.99317 1.00521 0.99032 1.21434 0.98074 0.95525 1.40652 0.92680 1.25719 0.96079 1.01386 0.95644 1.70076 1.11494 1.23727 1.51147 0.85574 0.78822 0.78891 0.78367 1.19846 1.21099 1.19515 0.91220 0.89810 0.92449 0.83017 0.83383 0.83866 0.85044 0.91239 0.91532 0.91013 0.90733 0.95478 0.92462 0.84873 0.93999 0.95020 0.93762 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.89 9.79 71.24 0.70 -1.19 16 2 C -0.14 -2.96 5.89 -19.77 -0.12 -3.08 16 3 C -0.09 -1.47 9.70 22.25 0.22 -1.26 16 4 C -0.16 -2.49 10.04 22.28 0.22 -2.27 16 5 C -0.09 -1.67 10.04 22.25 0.22 -1.45 16 6 C -0.22 -4.83 9.04 22.36 0.20 -4.63 16 7 C 0.10 2.57 6.66 22.50 0.15 2.72 16 8 O -0.33 -8.74 9.18 -92.43 -0.85 -9.59 16 9 C 0.07 1.67 4.74 71.98 0.34 2.01 16 10 C -0.10 -2.82 5.84 30.59 0.18 -2.64 16 11 C 0.07 2.33 5.48 86.30 0.47 2.81 16 12 N -0.69 -28.95 6.23 -495.46 -3.09 -32.03 16 13 C 0.21 10.79 2.44 44.17 0.11 10.90 16 14 H 0.01 0.37 7.74 -2.38 -0.02 0.35 16 15 C -0.15 -7.08 9.04 71.98 0.65 -6.43 16 16 C -0.52 -29.07 8.76 25.60 0.22 -28.84 16 17 H 0.05 3.10 7.83 -2.91 -0.02 3.08 16 18 C 0.01 0.57 5.17 84.65 0.44 1.00 16 19 N -0.92 -54.12 12.16 21.45 0.26 -53.86 16 20 Si 0.96 44.21 29.55 68.60 2.03 46.24 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 23 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 24 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 26 H 0.06 1.20 7.53 -2.38 -0.02 1.18 16 27 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 28 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 29 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.13 2.66 6.30 -2.91 -0.02 2.64 16 31 H 0.07 1.57 7.66 -2.39 -0.02 1.55 16 32 H 0.07 1.58 7.66 -2.39 -0.02 1.56 16 33 H 0.07 2.14 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.03 0.89 7.50 -2.38 -0.02 0.87 16 36 H 0.06 2.06 8.06 -2.39 -0.02 2.04 16 37 H 0.33 12.93 8.43 -89.69 -0.76 12.18 16 38 H 0.04 1.82 8.07 -2.39 -0.02 1.80 16 39 H 0.03 1.30 7.54 -2.39 -0.02 1.28 16 40 H 0.04 2.30 6.83 -2.38 -0.02 2.29 16 41 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -63.51 337.25 2.60 -60.91 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.24 Total: 20.67 kcal Atomic # 6 Polarization: -36.35 SS G_CDS: 4.01 Total: -32.34 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -2.83 Total: -85.89 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.85 Total: -9.59 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.51 2.60 -60.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067407243.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.869 kcal (2) G-P(sol) polarization free energy of solvation -63.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds