Wall clock time and date at job start Mon Mar 30 2020 00:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38146 * 120.02700 * 2 1 4 4 C 1.38269 * 120.05724 * 179.70112 * 3 2 1 5 5 C 1.38269 * 120.10857 * 0.30352 * 4 3 2 6 6 C 1.38147 * 120.05902 * 359.97042 * 5 4 3 7 7 C 1.50692 * 120.03120 * 180.02562 * 6 5 4 8 8 C 1.38735 * 120.02894 * 180.25222 * 2 1 3 9 9 O 1.35899 * 120.05441 * 0.02562 * 8 2 1 10 10 C 1.42901 * 116.99738 * 270.26842 * 9 8 2 11 11 C 1.53000 * 109.46749 * 179.97438 * 10 9 8 12 12 N 1.46896 * 109.46892 * 65.00775 * 11 10 9 13 13 C 1.46906 * 110.99924 * 179.97438 * 12 11 10 14 14 H 1.08995 * 109.47035 * 35.00236 * 13 12 11 15 15 C 1.52992 * 109.47169 * 274.99729 * 13 12 11 16 16 C 1.50702 * 109.47017 * 154.99874 * 13 12 11 17 17 H 1.08005 * 120.00006 * 5.45599 * 16 13 12 18 18 C 1.37877 * 119.99662 * 185.46685 * 16 13 12 19 19 N 1.31507 * 120.00556 * 9.54103 * 18 16 13 20 20 Si 1.86803 * 119.99652 * 189.54209 * 18 16 13 21 21 H 1.48506 * 109.47168 * 84.98943 * 20 18 16 22 22 H 1.48495 * 109.47325 * 204.98720 * 20 18 16 23 23 H 1.48502 * 109.47299 * 324.99484 * 20 18 16 24 24 H 1.08996 * 109.47252 * 90.00068 * 1 2 3 25 25 H 1.09006 * 109.47039 * 210.00358 * 1 2 3 26 26 H 1.09007 * 109.47231 * 329.99689 * 1 2 3 27 27 H 1.08000 * 119.97576 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.94677 * 180.27200 * 4 3 2 29 29 H 1.07999 * 119.97084 * 179.97438 * 5 4 3 30 30 H 1.09005 * 109.47155 * 90.00437 * 7 6 5 31 31 H 1.09001 * 109.47337 * 209.99891 * 7 6 5 32 32 H 1.08996 * 109.47349 * 330.00318 * 7 6 5 33 33 H 1.08999 * 109.47341 * 300.00249 * 10 9 8 34 34 H 1.09007 * 109.46682 * 60.00764 * 10 9 8 35 35 H 1.09000 * 109.46899 * 185.00115 * 11 10 9 36 36 H 1.09000 * 109.47588 * 305.00244 * 11 10 9 37 37 H 1.00904 * 111.00241 * 303.94632 * 12 11 10 38 38 H 1.08999 * 109.47343 * 303.75895 * 15 13 12 39 39 H 1.09003 * 109.47237 * 63.75814 * 15 13 12 40 40 H 1.09002 * 109.47385 * 183.75636 * 15 13 12 41 41 H 0.96997 * 120.00584 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5809 1.1968 0.0062 5 6 4.2752 0.0010 0.0062 6 6 3.5886 -1.1977 0.0005 7 6 4.3459 -2.5006 0.0010 8 6 2.2012 -1.2011 -0.0053 9 8 1.5234 -2.3790 -0.0110 10 6 1.1942 -2.9442 1.2595 11 6 0.4381 -4.2581 1.0527 12 7 1.3246 -5.2372 0.4099 13 6 0.6310 -6.5143 0.1955 14 1 -0.4160 -6.3240 -0.0401 15 6 0.7221 -7.3635 1.4649 16 6 1.2775 -7.2512 -0.9491 17 1 2.1722 -6.8573 -1.4083 18 6 0.7266 -8.4279 -1.4103 19 7 -0.4572 -8.8111 -0.9846 20 14 1.6618 -9.4781 -2.6400 21 1 2.6034 -10.3688 -1.9152 22 1 0.7022 -10.3012 -3.4190 23 1 2.4235 -8.5991 -3.5633 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5139 27 1 1.6583 2.1314 -0.0004 28 1 4.1195 2.1328 0.0107 29 1 5.3551 0.0042 0.0106 30 1 4.5238 -2.8170 1.0288 31 1 3.7613 -3.2608 -0.5171 32 1 5.3002 -2.3663 -0.5083 33 1 2.1092 -3.1354 1.8202 34 1 0.5663 -2.2477 1.8153 35 1 0.1096 -4.6440 2.0177 36 1 -0.4299 -4.0817 0.4174 37 1 1.6941 -4.8762 -0.4569 38 1 1.7687 -7.4978 1.7379 39 1 0.1964 -6.8608 2.2768 40 1 0.2659 -8.3368 1.2845 41 1 -0.8446 -9.6392 -1.3088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068611944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:06 Heat of formation + Delta-G solvation = -30.096519 kcal Electronic energy + Delta-G solvation = -19803.072597 eV Core-core repulsion = 16875.519886 eV Total energy + Delta-G solvation = -2927.552711 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.15014 -37.43751 -35.63637 -33.56999 -32.68197 -31.13503 -29.83375 -27.29639 -26.62317 -26.34384 -25.03985 -22.11972 -21.40781 -20.86587 -19.76764 -17.64050 -16.49430 -16.39703 -15.49899 -14.97202 -14.76646 -14.54727 -14.06973 -13.71710 -13.45244 -13.12099 -12.99159 -12.80473 -12.65951 -12.54427 -11.93693 -11.85481 -11.69433 -11.46160 -11.31690 -11.23997 -10.98206 -10.79413 -10.65734 -10.26710 -10.19561 -9.87271 -9.57323 -8.84913 -8.61410 -8.45142 -8.39939 -7.23096 -6.02641 -4.04152 1.21225 1.29986 3.33325 3.39199 3.42422 3.46096 4.03695 4.44142 4.75897 4.79607 4.92496 5.13522 5.20137 5.31563 5.38336 5.47306 5.48300 5.58277 5.62123 5.64902 5.74696 5.80319 5.85442 5.88763 6.09445 6.27319 6.35721 6.37449 6.41381 6.46038 6.62007 6.81104 6.83763 7.10542 7.19727 7.42825 7.76440 7.82402 7.89147 8.20976 8.41101 8.73189 9.07180 9.60589 11.06745 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.026712 B = 0.004216 C = 0.003966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.956390 B = 6639.879120 C = 7057.987680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.103 4.103 3 C -0.119 4.119 4 C -0.125 4.125 5 C -0.118 4.118 6 C -0.095 4.095 7 C -0.115 4.115 8 C 0.101 3.899 9 O -0.328 6.328 10 C 0.072 3.928 11 C 0.063 3.937 12 N -0.686 5.686 13 C 0.208 3.792 14 H 0.008 0.992 15 C -0.118 4.118 16 C -0.518 4.518 17 H 0.060 0.940 18 C 0.064 3.936 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.079 0.921 36 H 0.029 0.971 37 H 0.339 0.661 38 H 0.034 0.966 39 H 0.007 0.993 40 H 0.062 0.938 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.104 18.400 4.100 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.104 4.104 3 C -0.138 4.138 4 C -0.143 4.143 5 C -0.136 4.136 6 C -0.095 4.095 7 C -0.171 4.171 8 C 0.058 3.942 9 O -0.245 6.245 10 C -0.002 4.002 11 C -0.067 4.067 12 N -0.319 5.319 13 C 0.100 3.900 14 H 0.026 0.974 15 C -0.177 4.177 16 C -0.557 4.557 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.720 3.280 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.141 0.859 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.047 0.953 37 H 0.157 0.843 38 H 0.053 0.947 39 H 0.026 0.974 40 H 0.081 0.919 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.177 17.924 4.523 19.197 hybrid contribution -0.092 -0.275 -1.194 1.228 sum 5.084 17.650 3.330 18.667 Atomic orbital electron populations 1.20701 0.90796 1.02539 1.02676 1.20247 0.96714 0.92577 1.00833 1.20870 0.94166 0.96953 1.01762 1.21079 0.94218 0.97901 1.01086 1.20934 0.99708 0.91575 1.01424 1.20338 0.93194 0.96342 0.99659 1.20743 0.99477 0.94264 1.02663 1.18423 0.89502 0.85425 1.00889 1.86036 1.74284 1.34250 1.29917 1.22916 0.99230 0.94260 0.83788 1.21938 0.94433 0.90035 1.00336 1.60752 1.36342 1.04172 1.30600 1.19115 0.92838 0.84673 0.93353 0.97400 1.21646 0.98913 1.00850 0.96263 1.21218 1.11150 1.07479 1.15852 0.92188 1.24910 0.94537 0.97870 0.96496 1.69967 1.14895 1.23114 1.44839 0.86604 0.79743 0.80514 0.81092 1.20537 1.21419 1.19945 0.90958 0.91184 0.91866 0.86051 0.86141 0.85931 0.91181 0.89814 0.91819 0.92276 0.93539 0.90281 0.95298 0.84319 0.94704 0.97401 0.91893 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 9.79 36.00 0.35 -0.89 16 2 C -0.10 -1.32 5.89 -104.47 -0.62 -1.94 16 3 C -0.12 -1.31 9.70 -39.60 -0.38 -1.69 16 4 C -0.12 -1.30 10.04 -39.56 -0.40 -1.70 16 5 C -0.12 -1.35 9.70 -39.60 -0.38 -1.73 16 6 C -0.09 -1.28 5.89 -104.47 -0.62 -1.89 16 7 C -0.11 -1.50 9.79 36.00 0.35 -1.15 16 8 C 0.10 1.48 5.67 -39.21 -0.22 1.26 16 9 O -0.33 -5.32 7.85 -19.42 -0.15 -5.48 16 10 C 0.07 1.10 6.03 37.16 0.22 1.33 16 11 C 0.06 1.13 5.90 -3.83 -0.02 1.11 16 12 N -0.69 -14.82 6.30 -107.96 -0.68 -15.50 16 13 C 0.21 5.32 2.47 -68.86 -0.17 5.15 16 14 H 0.01 0.23 7.74 -51.93 -0.40 -0.17 16 15 C -0.12 -2.90 9.27 37.15 0.34 -2.56 16 16 C -0.52 -14.43 8.48 -34.44 -0.29 -14.73 16 17 H 0.06 1.66 7.69 -52.48 -0.40 1.26 16 18 C 0.06 1.79 5.17 -17.82 -0.09 1.70 16 19 N -0.89 -25.85 12.16 55.43 0.67 -25.18 16 20 Si 0.89 21.55 29.55 -169.99 -5.02 16.53 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.84 6.30 -51.93 -0.33 0.52 16 26 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 27 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 29 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.27 7.53 -51.93 -0.39 0.88 16 32 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.62 7.23 -51.92 -0.38 0.24 16 35 H 0.08 1.38 7.51 -51.93 -0.39 0.99 16 36 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 37 H 0.34 7.49 7.82 -39.29 -0.31 7.18 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.01 0.16 7.55 -51.93 -0.39 -0.24 16 40 H 0.06 1.67 6.83 -51.93 -0.35 1.32 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -29.52 336.44 -8.73 -38.25 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.70 Total: 4.03 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.92 Total: -17.72 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.01 Total: -40.68 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.15 Total: -5.48 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.52 -8.73 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068611944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.152 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds