Wall clock time and date at job start Mon Mar 30 2020 00:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99576 * 2 1 4 4 C 1.53000 * 109.47144 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46785 * 64.99738 * 4 3 2 6 6 C 1.46901 * 110.99847 * 66.05098 * 5 4 3 7 7 C 1.50701 * 109.47089 * 190.86131 * 6 5 4 8 8 H 1.08001 * 119.99575 * 5.03432 * 7 6 5 9 9 C 1.37874 * 120.00229 * 185.02917 * 7 6 5 10 10 N 1.31515 * 119.99910 * 354.68786 * 9 7 6 11 11 Si 1.86798 * 120.00277 * 174.68983 * 9 7 6 12 12 H 1.48496 * 109.47182 * 64.99788 * 11 9 7 13 13 H 1.48499 * 109.47371 * 185.00501 * 11 9 7 14 14 H 1.48506 * 109.46659 * 305.00033 * 11 9 7 15 15 C 1.46899 * 110.99857 * 190.00355 * 5 4 3 16 16 C 1.50697 * 109.47608 * 67.15928 * 15 5 4 17 17 C 1.38253 * 120.00249 * 253.83310 * 16 15 5 18 18 C 1.38213 * 120.00059 * 179.97438 * 17 16 15 19 19 C 1.38251 * 120.00111 * 359.97331 * 18 17 16 20 20 C 1.38216 * 119.99800 * 359.97438 * 19 18 17 21 21 C 1.38215 * 119.99890 * 73.54977 * 16 15 5 22 22 C 1.50703 * 119.99959 * 0.02562 * 21 16 15 23 23 H 1.09002 * 109.47202 * 60.00290 * 1 2 3 24 24 H 1.08999 * 109.46947 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47616 * 300.00211 * 1 2 3 26 26 H 1.09005 * 109.47645 * 59.99619 * 3 2 1 27 27 H 1.09005 * 109.47269 * 299.99715 * 3 2 1 28 28 H 1.08997 * 109.46965 * 305.00224 * 4 3 2 29 29 H 1.08997 * 109.47678 * 185.00094 * 4 3 2 30 30 H 1.08996 * 109.46823 * 310.86325 * 6 5 4 31 31 H 1.08997 * 109.47245 * 70.86100 * 6 5 4 32 32 H 0.97003 * 120.00160 * 179.97438 * 10 9 7 33 33 H 1.09002 * 109.47156 * 187.16225 * 15 5 4 34 34 H 1.09009 * 109.47246 * 307.16020 * 15 5 4 35 35 H 1.08003 * 119.99579 * 359.97369 * 17 16 15 36 36 H 1.08006 * 119.99466 * 179.97438 * 18 17 16 37 37 H 1.07998 * 120.00308 * 179.97438 * 19 18 17 38 38 H 1.07999 * 119.99514 * 179.97438 * 20 19 18 39 39 H 1.08999 * 109.47000 * 90.54059 * 22 21 16 40 40 H 1.09002 * 109.47200 * 210.54463 * 22 21 16 41 41 H 1.09006 * 109.46863 * 330.54395 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9778 0.5624 -1.2543 6 6 3.6968 1.4348 -2.4023 7 6 3.9128 0.6674 -3.6812 8 1 4.1480 -0.3861 -3.6456 9 6 3.8102 1.3102 -4.8966 10 7 3.4219 2.5658 -4.9457 11 14 4.2225 0.3977 -6.4736 12 1 3.2505 -0.7067 -6.6750 13 1 4.1504 1.3364 -7.6220 14 1 5.5947 -0.1619 -6.3772 15 6 5.4035 0.2134 -1.1948 16 6 5.6100 -0.8859 -0.1849 17 6 6.1899 -0.6016 1.0375 18 6 6.3788 -1.6097 1.9639 19 6 5.9874 -2.9023 1.6685 20 6 5.4066 -3.1863 0.4468 21 6 5.2143 -2.1772 -0.4784 22 6 4.5769 -2.4860 -1.8086 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6885 1.8465 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8507 0.5687 0.8427 29 1 3.9784 2.1766 0.0902 30 1 2.6631 1.7770 -2.3541 31 1 4.3658 2.2950 -2.3773 32 1 3.3501 3.0181 -5.8008 33 1 5.7354 -0.1272 -2.1756 34 1 5.9803 1.0903 -0.9004 35 1 6.4954 0.4083 1.2684 36 1 6.8323 -1.3876 2.9187 37 1 6.1353 -3.6901 2.3922 38 1 5.1012 -4.1961 0.2159 39 1 5.3493 -2.7631 -2.5260 40 1 3.8756 -3.3124 -1.6924 41 1 4.0446 -1.6059 -2.1695 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070142975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:03 Heat of formation + Delta-G solvation = -36.723997 kcal Electronic energy + Delta-G solvation = -20549.289344 eV Core-core repulsion = 17621.449244 eV Total energy + Delta-G solvation = -2927.840100 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.57414 -39.01725 -37.54806 -34.69692 -33.58927 -32.47916 -30.85684 -28.90570 -27.57882 -27.06831 -25.88585 -24.31623 -22.76077 -22.00492 -20.91186 -18.66145 -17.47823 -17.16313 -16.85661 -16.67279 -16.39838 -15.88317 -15.84698 -15.35184 -14.96437 -14.68494 -14.29798 -13.92205 -13.85025 -13.45129 -13.27428 -13.19576 -12.95096 -12.79212 -12.71739 -12.57091 -12.41681 -12.33112 -12.02391 -11.75703 -11.68225 -11.30396 -11.25652 -10.58237 -10.39869 -9.58807 -9.32798 -8.87651 -8.16608 -6.23278 0.57965 0.63061 1.41638 1.43690 1.51247 2.42154 2.91602 3.00865 3.16431 3.45444 3.99457 4.06338 4.20038 4.23793 4.31203 4.34608 4.44192 4.52936 4.57200 4.59709 4.63651 4.70284 4.85879 4.87005 4.89601 4.94461 4.95989 4.99186 5.17515 5.24292 5.27020 5.36543 5.55887 5.71634 5.72541 5.79462 6.00878 6.12879 6.27227 6.37058 6.41020 6.71028 6.93450 7.45181 8.94392 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.007163 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.554308 B = 3907.886618 C = 4823.586332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.396 6.396 3 C 0.071 3.929 4 C 0.055 3.945 5 N -0.519 5.519 6 C 0.206 3.794 7 C -0.515 4.515 8 H 0.069 0.931 9 C 0.005 3.995 10 N -0.934 5.934 11 Si 0.958 3.042 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.268 1.268 15 C 0.106 3.894 16 C -0.087 4.087 17 C -0.124 4.124 18 C -0.131 4.131 19 C -0.122 4.122 20 C -0.133 4.133 21 C -0.070 4.070 22 C -0.125 4.125 23 H 0.030 0.970 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.011 0.989 31 H -0.039 1.039 32 H 0.262 0.738 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.626 -7.906 13.559 15.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.315 6.315 3 C -0.006 4.006 4 C -0.073 4.073 5 N -0.243 5.243 6 C 0.081 3.919 7 C -0.554 4.554 8 H 0.087 0.913 9 C -0.193 4.193 10 N -0.575 5.575 11 Si 0.783 3.217 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.192 1.192 15 C -0.022 4.022 16 C -0.088 4.088 17 C -0.142 4.142 18 C -0.149 4.149 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.070 4.070 22 C -0.182 4.182 23 H 0.049 0.951 24 H 0.113 0.887 25 H 0.074 0.926 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.100 0.900 29 H 0.058 0.942 30 H 0.029 0.971 31 H -0.021 1.021 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.042 0.958 35 H 0.142 0.858 36 H 0.162 0.838 37 H 0.164 0.836 38 H 0.151 0.849 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.424 -8.349 13.362 15.820 hybrid contribution 0.238 1.185 -1.154 1.671 sum 1.663 -7.164 12.208 14.252 Atomic orbital electron populations 1.22839 0.80644 1.03327 1.00026 1.87955 1.20355 1.27865 1.95315 1.22555 0.93487 0.84869 0.99649 1.22118 0.94004 0.97446 0.93709 1.61979 1.16045 1.44079 1.02209 1.19446 0.94245 0.89858 0.88397 1.21498 1.46544 0.96491 0.90841 0.91309 1.25802 0.95279 0.95735 1.02500 1.70081 1.48507 1.12411 1.26536 0.85603 0.79184 0.78342 0.78567 1.19513 1.21091 1.19247 1.20815 0.88878 0.94505 0.97976 1.19793 0.99340 0.94180 0.95448 1.21199 0.99881 1.00031 0.93139 1.21325 1.00853 0.92865 0.99815 1.21397 0.98436 0.97366 0.96756 1.21262 1.00599 0.99002 0.94217 1.19889 0.97220 0.93045 0.96893 1.20950 0.99980 1.03286 0.93956 0.95121 0.88746 0.92633 0.91201 0.95003 0.89952 0.94245 0.97131 1.02149 0.92919 0.91226 0.95819 0.85832 0.83759 0.83587 0.84867 0.92060 0.91577 0.90371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -14.74 10.65 -148.98 -1.59 -16.32 16 3 C 0.07 2.54 6.01 71.98 0.43 2.98 16 4 C 0.06 2.07 5.21 86.30 0.45 2.52 16 5 N -0.52 -22.74 3.28 -905.36 -2.97 -25.71 16 6 C 0.21 10.93 4.60 85.56 0.39 11.33 16 7 C -0.52 -28.92 8.19 25.60 0.21 -28.71 16 8 H 0.07 3.78 5.68 -2.91 -0.02 3.76 16 9 C 0.00 0.26 5.45 84.65 0.46 0.72 16 10 N -0.93 -56.16 13.29 21.45 0.29 -55.88 16 11 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 13 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 15 C 0.11 4.29 4.10 85.56 0.35 4.64 16 16 C -0.09 -3.02 4.46 -19.87 -0.09 -3.11 16 17 C -0.12 -3.58 8.92 22.27 0.20 -3.38 16 18 C -0.13 -3.12 10.05 22.27 0.22 -2.89 16 19 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 20 C -0.13 -3.65 9.71 22.27 0.22 -3.43 16 21 C -0.07 -2.36 5.88 -19.87 -0.12 -2.47 16 22 C -0.13 -4.45 9.36 71.24 0.67 -3.79 16 23 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 27 H 0.03 1.30 6.16 -2.38 -0.01 1.28 16 28 H 0.08 2.90 6.47 -2.39 -0.02 2.88 16 29 H 0.04 1.43 8.12 -2.39 -0.02 1.41 16 30 H 0.01 0.61 5.98 -2.39 -0.01 0.60 16 31 H -0.04 -2.26 8.11 -2.39 -0.02 -2.28 16 32 H 0.26 14.93 8.31 -92.71 -0.77 14.15 16 33 H 0.07 3.13 6.29 -2.39 -0.02 3.11 16 34 H 0.02 0.94 7.91 -2.38 -0.02 0.92 16 35 H 0.12 3.22 7.99 -2.91 -0.02 3.20 16 36 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 37 H 0.15 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 39 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.10 8.09 -2.39 -0.02 2.08 16 41 H 0.08 3.37 4.18 -2.38 -0.01 3.36 16 Total: -1.00 -65.36 329.24 3.63 -61.74 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 1.00 Total: 15.86 kcal Atomic # 6 Polarization: -31.05 SS G_CDS: 4.87 Total: -26.18 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -2.68 Total: -81.59 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -1.59 Total: -16.32 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -65.36 3.63 -61.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070142975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.011 kcal (2) G-P(sol) polarization free energy of solvation -65.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds