Wall clock time and date at job start Mon Mar 30 2020 00:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99722 * 2 1 4 4 C 1.53005 * 109.47225 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47114 * 67.25659 * 4 3 2 6 6 C 1.46903 * 110.99988 * 290.52202 * 5 4 3 7 7 C 1.50701 * 109.47363 * 299.82500 * 6 5 4 8 8 H 1.08002 * 119.99674 * 354.86794 * 7 6 5 9 9 C 1.37877 * 120.00185 * 174.87130 * 7 6 5 10 10 N 1.31512 * 120.00016 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99777 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47228 * 90.00373 * 11 9 7 13 13 H 1.48506 * 109.46822 * 209.99884 * 11 9 7 14 14 H 1.48498 * 109.47345 * 329.99953 * 11 9 7 15 15 C 1.46894 * 111.00012 * 54.47493 * 5 4 3 16 16 C 1.50705 * 109.47016 * 66.04944 * 15 5 4 17 17 C 1.38263 * 119.99771 * 270.21044 * 16 15 5 18 18 C 1.38210 * 119.99794 * 180.25325 * 17 16 15 19 19 C 1.38255 * 119.99945 * 359.51275 * 18 17 16 20 20 C 1.38215 * 120.00294 * 0.27734 * 19 18 17 21 21 C 1.50700 * 120.00357 * 179.97438 * 20 19 18 22 22 C 1.38209 * 120.00324 * 89.99720 * 16 15 5 23 23 H 1.08998 * 109.47107 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47500 * 299.99965 * 1 2 3 25 25 H 1.09006 * 109.46828 * 60.00547 * 1 2 3 26 26 H 1.09003 * 109.47360 * 59.99761 * 3 2 1 27 27 H 1.08996 * 109.47563 * 299.99626 * 3 2 1 28 28 H 1.09006 * 109.46596 * 307.25630 * 4 3 2 29 29 H 1.08997 * 109.46920 * 187.26093 * 4 3 2 30 30 H 1.09005 * 109.46655 * 59.82036 * 6 5 4 31 31 H 1.09001 * 109.47484 * 179.81957 * 6 5 4 32 32 H 0.96992 * 120.00353 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.47697 * 306.04579 * 15 5 4 34 34 H 1.08996 * 109.47184 * 186.04712 * 15 5 4 35 35 H 1.08001 * 120.00123 * 0.04172 * 17 16 15 36 36 H 1.07999 * 120.00046 * 179.78834 * 18 17 16 37 37 H 1.08003 * 120.00270 * 180.25398 * 19 18 17 38 38 H 1.08999 * 109.46882 * 89.99626 * 21 20 19 39 39 H 1.08995 * 109.46927 * 209.99679 * 21 20 19 40 40 H 1.09007 * 109.46838 * 330.00244 * 21 20 19 41 41 H 1.07999 * 119.99734 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9818 0.6121 -1.2763 6 6 3.5915 -0.7999 -1.3852 7 6 4.2209 -1.5832 -0.2621 8 1 4.9136 -1.1001 0.4111 9 6 3.9126 -2.9165 -0.0942 10 7 3.0687 -3.5046 -0.9137 11 14 4.6934 -3.8875 1.2975 12 1 3.8380 -3.7932 2.5077 13 1 4.8257 -5.3107 0.8946 14 1 6.0372 -3.3307 1.5965 15 6 3.4663 1.3898 -2.4109 16 6 4.0834 2.7647 -2.3993 17 6 3.4687 3.7925 -1.7083 18 6 4.0319 5.0546 -1.7020 19 6 5.2152 5.2870 -2.3783 20 6 5.8320 4.2585 -3.0654 21 6 7.1215 4.5118 -3.8029 22 6 5.2661 2.9971 -3.0756 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8481 0.5360 0.8189 29 1 3.9780 2.1724 0.1305 30 1 2.5064 -0.8827 -1.3223 31 1 3.9314 -1.1982 -2.3412 32 1 2.8521 -4.4426 -0.7958 33 1 2.3829 1.4772 -2.3292 34 1 3.7208 0.8852 -3.3428 35 1 2.5467 3.6099 -1.1764 36 1 3.5500 5.8583 -1.1652 37 1 5.6575 6.2722 -2.3700 38 1 7.9637 4.3274 -3.1361 39 1 7.1856 3.8445 -4.6624 40 1 7.1478 5.5469 -4.1437 41 1 5.7478 2.1935 -3.6128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070142979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:08 Heat of formation + Delta-G solvation = -12.581510 kcal Electronic energy + Delta-G solvation = -20350.366021 eV Core-core repulsion = 17423.572818 eV Total energy + Delta-G solvation = -2926.793203 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.47623 -37.87061 -35.73131 -32.92307 -32.19980 -31.16236 -28.98352 -27.17060 -26.61049 -25.83144 -24.35901 -22.62323 -21.79461 -20.68122 -19.17383 -16.36893 -16.27777 -16.02422 -15.77623 -14.97512 -14.83145 -14.49544 -14.25083 -14.03019 -13.52487 -13.39004 -13.04187 -12.82164 -12.21605 -12.05917 -11.88193 -11.77392 -11.51292 -11.24737 -11.05120 -10.97719 -10.81153 -10.71655 -10.57807 -10.49301 -10.04693 -9.73047 -9.03772 -8.91836 -8.52930 -8.38539 -8.22364 -6.99929 -5.84443 -3.81825 1.57149 1.64196 3.41184 3.46716 3.50824 3.96226 4.45710 4.57640 4.96866 4.98615 5.10460 5.26644 5.29748 5.46528 5.52455 5.58451 5.64141 5.64744 5.71589 5.71828 5.83922 5.87614 5.87668 5.93353 6.07725 6.17620 6.18736 6.30957 6.35654 6.41585 6.66521 6.77205 6.83741 6.98325 7.25410 7.42552 7.79730 7.90458 7.94419 8.20653 8.38028 8.73093 9.23537 9.78992 11.27067 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.005607 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.800447 B = 4992.917556 C = 5802.721455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.342 6.342 3 C 0.021 3.979 4 C 0.062 3.938 5 N -0.525 5.525 6 C 0.181 3.819 7 C -0.491 4.491 8 H 0.057 0.943 9 C 0.059 3.941 10 N -0.898 5.898 11 Si 0.890 3.110 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.275 1.275 15 C 0.082 3.918 16 C -0.054 4.054 17 C -0.125 4.125 18 C -0.120 4.120 19 C -0.132 4.132 20 C -0.091 4.091 21 C -0.112 4.112 22 C -0.100 4.100 23 H 0.082 0.918 24 H 0.028 0.972 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.017 0.983 32 H 0.256 0.744 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.324 15.884 -2.763 16.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.260 6.260 3 C -0.057 4.057 4 C -0.067 4.067 5 N -0.248 5.248 6 C 0.057 3.943 7 C -0.530 4.530 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.538 5.538 11 Si 0.718 3.282 12 H -0.210 1.210 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.046 4.046 16 C -0.055 4.055 17 C -0.144 4.144 18 C -0.138 4.138 19 C -0.151 4.151 20 C -0.091 4.091 21 C -0.168 4.168 22 C -0.119 4.119 23 H 0.100 0.900 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.056 0.944 31 H 0.035 0.965 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.234 15.522 -2.824 15.779 hybrid contribution -0.838 -0.399 0.877 1.277 sum -0.604 15.124 -1.948 15.261 Atomic orbital electron populations 1.22677 0.83758 1.02269 0.98242 1.88490 1.17295 1.25649 1.94554 1.23415 0.97697 0.86075 0.98552 1.22217 0.89280 0.99789 0.95444 1.62371 1.58193 1.05114 0.99104 1.20056 0.97213 0.80237 0.96808 1.21036 1.24838 0.94288 1.12845 0.92503 1.24859 0.95378 0.97708 0.96213 1.69956 1.34903 1.11360 1.37592 0.86638 0.79645 0.79208 0.82675 1.20970 1.21536 1.20052 1.21119 0.96362 0.90317 0.96826 1.20002 0.94814 0.95263 0.95417 1.21083 1.00422 0.92917 0.99948 1.21013 0.96221 0.96765 0.99825 1.20895 0.96319 0.98497 0.99361 1.19884 0.96868 0.93743 0.98569 1.20761 0.94660 1.01789 0.99632 1.20939 0.95143 0.95926 0.99896 0.89960 0.95361 0.95336 0.94698 0.94014 0.88748 0.91380 0.94435 0.96548 0.93389 0.94456 0.90700 0.86663 0.86650 0.86779 0.91320 0.91637 0.92021 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.34 -7.32 7.57 -35.23 -0.27 -7.58 16 3 C 0.02 0.38 5.16 37.16 0.19 0.57 16 4 C 0.06 1.22 5.18 -3.82 -0.02 1.20 16 5 N -0.52 -11.38 4.74 -237.51 -1.13 -12.51 16 6 C 0.18 4.74 4.27 -4.97 -0.02 4.72 16 7 C -0.49 -13.97 8.22 -34.44 -0.28 -14.25 16 8 H 0.06 1.62 6.97 -52.49 -0.37 1.25 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 11 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 12 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 C 0.08 1.50 4.80 -4.98 -0.02 1.48 16 16 C -0.05 -0.87 4.89 -104.62 -0.51 -1.38 16 17 C -0.13 -1.79 8.02 -39.58 -0.32 -2.11 16 18 C -0.12 -1.52 10.05 -39.59 -0.40 -1.91 16 19 C -0.13 -1.63 9.70 -39.58 -0.38 -2.02 16 20 C -0.09 -1.19 5.88 -104.62 -0.62 -1.80 16 21 C -0.11 -1.14 10.01 36.01 0.36 -0.78 16 22 C -0.10 -1.52 9.36 -39.59 -0.37 -1.89 16 23 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 24 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.04 0.70 4.46 -51.93 -0.23 0.47 16 28 H 0.09 2.11 6.33 -51.93 -0.33 1.78 16 29 H 0.07 1.21 6.52 -51.93 -0.34 0.87 16 30 H 0.04 1.05 5.29 -51.93 -0.27 0.78 16 31 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 32 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 33 H 0.04 0.68 5.66 -51.93 -0.29 0.39 16 34 H 0.07 1.38 7.95 -51.93 -0.41 0.97 16 35 H 0.12 1.56 6.17 -52.49 -0.32 1.23 16 36 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.11 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 40 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 41 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -31.22 325.25 -8.50 -39.72 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -6.35 Total: -0.43 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.38 Total: -15.00 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: -0.39 Total: -38.81 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.27 Total: -7.58 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -31.22 -8.50 -39.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070142979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.136 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds