Wall clock time and date at job start Mon Mar 30 2020 00:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99722 * 2 1 4 4 C 1.53005 * 109.47225 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47114 * 67.25659 * 4 3 2 6 6 C 1.46903 * 110.99988 * 290.52202 * 5 4 3 7 7 C 1.50701 * 109.47363 * 299.82500 * 6 5 4 8 8 H 1.08002 * 119.99674 * 354.86794 * 7 6 5 9 9 C 1.37877 * 120.00185 * 174.87130 * 7 6 5 10 10 N 1.31512 * 120.00016 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99777 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47228 * 90.00373 * 11 9 7 13 13 H 1.48506 * 109.46822 * 209.99884 * 11 9 7 14 14 H 1.48498 * 109.47345 * 329.99953 * 11 9 7 15 15 C 1.46894 * 111.00012 * 54.47493 * 5 4 3 16 16 C 1.50705 * 109.47016 * 66.04944 * 15 5 4 17 17 C 1.38263 * 119.99771 * 270.21044 * 16 15 5 18 18 C 1.38210 * 119.99794 * 180.25325 * 17 16 15 19 19 C 1.38255 * 119.99945 * 359.51275 * 18 17 16 20 20 C 1.38215 * 120.00294 * 0.27734 * 19 18 17 21 21 C 1.50700 * 120.00357 * 179.97438 * 20 19 18 22 22 C 1.38209 * 120.00324 * 89.99720 * 16 15 5 23 23 H 1.08998 * 109.47107 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47500 * 299.99965 * 1 2 3 25 25 H 1.09006 * 109.46828 * 60.00547 * 1 2 3 26 26 H 1.09003 * 109.47360 * 59.99761 * 3 2 1 27 27 H 1.08996 * 109.47563 * 299.99626 * 3 2 1 28 28 H 1.09006 * 109.46596 * 307.25630 * 4 3 2 29 29 H 1.08997 * 109.46920 * 187.26093 * 4 3 2 30 30 H 1.09005 * 109.46655 * 59.82036 * 6 5 4 31 31 H 1.09001 * 109.47484 * 179.81957 * 6 5 4 32 32 H 0.96992 * 120.00353 * 179.97438 * 10 9 7 33 33 H 1.08999 * 109.47697 * 306.04579 * 15 5 4 34 34 H 1.08996 * 109.47184 * 186.04712 * 15 5 4 35 35 H 1.08001 * 120.00123 * 0.04172 * 17 16 15 36 36 H 1.07999 * 120.00046 * 179.78834 * 18 17 16 37 37 H 1.08003 * 120.00270 * 180.25398 * 19 18 17 38 38 H 1.08999 * 109.46882 * 89.99626 * 21 20 19 39 39 H 1.08995 * 109.46927 * 209.99679 * 21 20 19 40 40 H 1.09007 * 109.46838 * 330.00244 * 21 20 19 41 41 H 1.07999 * 119.99734 * 0.02562 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9818 0.6121 -1.2763 6 6 3.5915 -0.7999 -1.3852 7 6 4.2209 -1.5832 -0.2621 8 1 4.9136 -1.1001 0.4111 9 6 3.9126 -2.9165 -0.0942 10 7 3.0687 -3.5046 -0.9137 11 14 4.6934 -3.8875 1.2975 12 1 3.8380 -3.7932 2.5077 13 1 4.8257 -5.3107 0.8946 14 1 6.0372 -3.3307 1.5965 15 6 3.4663 1.3898 -2.4109 16 6 4.0834 2.7647 -2.3993 17 6 3.4687 3.7925 -1.7083 18 6 4.0319 5.0546 -1.7020 19 6 5.2152 5.2870 -2.3783 20 6 5.8320 4.2585 -3.0654 21 6 7.1215 4.5118 -3.8029 22 6 5.2661 2.9971 -3.0756 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8481 0.5360 0.8189 29 1 3.9780 2.1724 0.1305 30 1 2.5064 -0.8827 -1.3223 31 1 3.9314 -1.1982 -2.3412 32 1 2.8521 -4.4426 -0.7958 33 1 2.3829 1.4772 -2.3292 34 1 3.7208 0.8852 -3.3428 35 1 2.5467 3.6099 -1.1764 36 1 3.5500 5.8583 -1.1652 37 1 5.6575 6.2722 -2.3700 38 1 7.9637 4.3274 -3.1361 39 1 7.1856 3.8445 -4.6624 40 1 7.1478 5.5469 -4.1437 41 1 5.7478 2.1935 -3.6128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070142979.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:08 Heat of formation + Delta-G solvation = -31.935924 kcal Electronic energy + Delta-G solvation = -20351.205292 eV Core-core repulsion = 17423.572818 eV Total energy + Delta-G solvation = -2927.632474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.69656 -39.29283 -37.29924 -34.76042 -33.53669 -32.39047 -30.63342 -28.82362 -27.68496 -27.23458 -26.00319 -24.37104 -22.94741 -22.05792 -20.63339 -18.37323 -17.59951 -17.52796 -17.10757 -16.65036 -16.12367 -15.96281 -15.77318 -15.51262 -14.91251 -14.45506 -14.38179 -13.96028 -13.82674 -13.49379 -13.14894 -13.01953 -12.97649 -12.84104 -12.61579 -12.57545 -12.46996 -12.37360 -12.01678 -11.80035 -11.75505 -11.55387 -11.09374 -10.57527 -10.29752 -9.62260 -9.42881 -8.74547 -8.06181 -6.11072 0.50842 0.57947 1.41844 1.43032 1.53462 2.47212 2.86715 3.05096 3.27836 3.58945 3.87234 3.98020 4.14640 4.14956 4.28252 4.36260 4.38804 4.49215 4.54016 4.55581 4.57400 4.69298 4.70588 4.82361 4.85996 4.88235 4.92538 5.05512 5.15431 5.25511 5.37423 5.42874 5.63586 5.70442 5.74861 5.78299 5.84762 6.19898 6.22584 6.42194 6.47099 6.77013 7.03824 7.54287 9.05121 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.005607 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.800447 B = 4992.917556 C = 5802.721455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.389 6.389 3 C 0.025 3.975 4 C 0.066 3.934 5 N -0.535 5.535 6 C 0.198 3.802 7 C -0.502 4.502 8 H 0.051 0.949 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.957 3.043 12 H -0.277 1.277 13 H -0.284 1.284 14 H -0.269 1.269 15 C 0.089 3.911 16 C -0.074 4.074 17 C -0.133 4.133 18 C -0.116 4.116 19 C -0.129 4.129 20 C -0.094 4.094 21 C -0.111 4.111 22 C -0.121 4.121 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.022 0.978 31 H -0.019 1.019 32 H 0.258 0.742 33 H 0.038 0.962 34 H 0.059 0.941 35 H 0.122 0.878 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.016 18.473 -1.755 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.308 6.308 3 C -0.052 4.052 4 C -0.063 4.063 5 N -0.258 5.258 6 C 0.072 3.928 7 C -0.540 4.540 8 H 0.069 0.931 9 C -0.190 4.190 10 N -0.572 5.572 11 Si 0.782 3.218 12 H -0.203 1.203 13 H -0.210 1.210 14 H -0.194 1.194 15 C -0.038 4.038 16 C -0.074 4.074 17 C -0.151 4.151 18 C -0.134 4.134 19 C -0.147 4.147 20 C -0.094 4.094 21 C -0.167 4.167 22 C -0.140 4.140 23 H 0.090 0.910 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.040 0.960 31 H -0.001 1.001 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.575 18.137 -1.814 18.237 hybrid contribution -0.940 -1.097 0.518 1.535 sum -0.366 17.041 -1.297 17.094 Atomic orbital electron populations 1.22786 0.81716 1.02317 1.00262 1.88394 1.19750 1.27712 1.94939 1.23399 0.96090 0.85304 1.00442 1.22150 0.91066 0.99832 0.93218 1.62213 1.59034 1.03372 1.01177 1.19653 0.95847 0.82985 0.94282 1.21291 1.24682 0.94891 1.13177 0.93074 1.25680 0.95886 0.98769 0.98682 1.70085 1.36186 1.11674 1.39287 0.85585 0.78913 0.77682 0.79578 1.20259 1.20981 1.19367 1.21026 0.96516 0.91473 0.94833 1.19796 0.95818 0.94179 0.97629 1.21191 1.00769 0.93282 0.99885 1.21374 0.96132 0.96651 0.99267 1.21316 0.95946 0.99518 0.97967 1.20208 0.97764 0.92977 0.98490 1.20812 0.93255 1.03219 0.99460 1.21007 0.95396 0.96983 1.00613 0.91032 0.92699 0.93782 0.91918 0.92650 0.91761 0.89075 0.96047 1.00126 0.93305 0.94369 0.92197 0.85971 0.83612 0.83679 0.90842 0.91599 0.89793 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.10 16 2 O -0.39 -16.76 7.57 -148.98 -1.13 -17.89 16 3 C 0.03 0.89 5.16 71.98 0.37 1.26 16 4 C 0.07 2.60 5.18 86.31 0.45 3.05 16 5 N -0.53 -23.95 4.74 -905.36 -4.29 -28.24 16 6 C 0.20 10.88 4.27 85.56 0.37 11.24 16 7 C -0.50 -29.45 8.22 25.60 0.21 -29.23 16 8 H 0.05 2.99 6.97 -2.91 -0.02 2.97 16 9 C 0.01 0.42 5.46 84.65 0.46 0.88 16 10 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 11 Si 0.96 46.26 29.54 68.60 2.03 48.29 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 15 C 0.09 3.38 4.80 85.56 0.41 3.79 16 16 C -0.07 -2.34 4.89 -19.86 -0.10 -2.44 16 17 C -0.13 -3.53 8.02 22.27 0.18 -3.35 16 18 C -0.12 -2.52 10.05 22.27 0.22 -2.30 16 19 C -0.13 -2.72 9.70 22.27 0.22 -2.51 16 20 C -0.09 -2.28 5.88 -19.87 -0.12 -2.40 16 21 C -0.11 -2.01 10.01 71.24 0.71 -1.29 16 22 C -0.12 -3.65 9.36 22.27 0.21 -3.44 16 23 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.79 4.46 -2.39 -0.01 1.78 16 28 H 0.06 2.92 6.33 -2.38 -0.02 2.91 16 29 H 0.09 3.15 6.52 -2.39 -0.02 3.13 16 30 H 0.02 1.28 5.29 -2.38 -0.01 1.27 16 31 H -0.02 -1.17 8.05 -2.39 -0.02 -1.19 16 32 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 33 H 0.04 1.42 5.66 -2.39 -0.01 1.41 16 34 H 0.06 2.37 7.95 -2.39 -0.02 2.36 16 35 H 0.12 3.00 6.17 -2.91 -0.02 2.98 16 36 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.15 2.16 8.06 -2.91 -0.02 2.13 16 38 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.07 1.18 8.09 -2.39 -0.02 1.16 16 40 H 0.08 1.14 8.09 -2.38 -0.02 1.13 16 41 H 0.11 3.44 8.06 -2.91 -0.02 3.41 16 Total: -1.00 -69.17 325.25 2.73 -66.44 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 1.00 Total: 13.39 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: 4.84 Total: -24.63 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -4.01 Total: -85.60 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -1.13 Total: -17.89 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -69.17 2.73 -66.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070142979.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.504 kcal (2) G-P(sol) polarization free energy of solvation -69.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds