Wall clock time and date at job start Mon Mar 30 2020 00:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 109.47179 * 2 1 4 4 C 1.38280 * 119.97205 * 270.02299 * 3 2 1 5 5 C 1.38250 * 120.10833 * 180.02562 * 4 3 2 6 6 C 1.38159 * 120.05742 * 359.68104 * 5 4 3 7 7 C 1.38710 * 119.94311 * 0.57011 * 6 5 4 8 8 O 1.35900 * 120.05544 * 179.72143 * 7 6 5 9 9 C 1.42898 * 117.00172 * 359.72769 * 8 7 6 10 10 C 1.52997 * 109.47319 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.47150 * 64.99949 * 10 9 8 12 12 C 1.46897 * 110.99705 * 66.04695 * 11 10 9 13 13 C 1.46902 * 111.00011 * 190.00236 * 11 10 9 14 14 C 1.50695 * 109.46925 * 170.00466 * 13 11 10 15 15 H 1.08005 * 120.00318 * 359.97438 * 14 13 11 16 16 C 1.37882 * 119.99907 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99955 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99908 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47186 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47041 * 119.99860 * 18 16 14 21 21 H 1.48504 * 109.47028 * 239.99999 * 18 16 14 22 22 C 1.38129 * 119.97079 * 89.99908 * 3 2 1 23 23 H 1.08992 * 109.46874 * 299.99433 * 1 2 3 24 24 H 1.08995 * 109.46940 * 60.00457 * 1 2 3 25 25 H 1.09003 * 109.46889 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47190 * 239.99987 * 2 1 3 27 27 H 1.09002 * 109.47355 * 120.00304 * 2 1 3 28 28 H 1.08000 * 119.95034 * 0.02562 * 4 3 2 29 29 H 1.08006 * 119.97154 * 179.97438 * 5 4 3 30 30 H 1.08006 * 120.03137 * 180.29323 * 6 5 4 31 31 H 1.09002 * 109.47259 * 300.00149 * 9 8 7 32 32 H 1.09001 * 109.47074 * 60.00171 * 9 8 7 33 33 H 1.09001 * 109.47630 * 185.00204 * 10 9 8 34 34 H 1.09004 * 109.47346 * 305.00335 * 10 9 8 35 35 H 1.08999 * 109.47085 * 60.00226 * 12 11 10 36 36 H 1.09006 * 109.47338 * 179.97438 * 12 11 10 37 37 H 1.08998 * 109.47507 * 300.00170 * 12 11 10 38 38 H 1.09000 * 109.47194 * 289.99976 * 13 11 10 39 39 H 1.08992 * 109.47514 * 50.00046 * 13 11 10 40 40 H 0.96999 * 119.99977 * 180.02562 * 17 16 14 41 41 H 1.07998 * 120.02418 * 0.02613 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0722 -1.1979 5 6 2.7235 3.3755 -1.2012 6 6 2.9498 4.0325 -0.0070 7 6 2.7250 3.3794 1.1959 8 8 2.9523 4.0216 2.3718 9 6 3.4281 5.3669 2.2950 10 6 3.6233 5.9203 3.7080 11 7 4.6889 5.1693 4.3852 12 6 5.9874 5.3983 3.7377 13 6 4.7457 5.5080 5.8135 14 6 5.6722 4.5522 6.5199 15 1 6.1687 3.7709 5.9636 16 6 5.8859 4.6751 7.8765 17 7 5.2816 5.6268 8.5538 18 14 7.0338 3.4898 8.7523 19 1 7.5835 2.5184 7.7729 20 1 8.1474 4.2489 9.3758 21 1 6.2823 2.7595 9.8046 22 6 2.2624 2.0714 1.1966 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.0810 1.5622 -2.1325 29 1 2.9027 3.8821 -2.1381 30 1 3.3057 5.0522 -0.0101 31 1 4.3788 5.3862 1.7623 32 1 2.7007 5.9796 1.7625 33 1 3.9005 6.9729 3.6509 34 1 2.6944 5.8192 4.2694 35 1 6.2300 6.4602 3.7755 36 1 6.7585 4.8310 4.2590 37 1 5.9374 5.0738 2.6983 38 1 5.1160 6.5265 5.9309 39 1 3.7477 5.4324 6.2449 40 1 5.4323 5.7135 9.5081 41 1 2.0827 1.5620 2.1318 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078645314.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:00 Heat of formation + Delta-G solvation = -39.181437 kcal Electronic energy + Delta-G solvation = -19295.041776 eV Core-core repulsion = 16367.095114 eV Total energy + Delta-G solvation = -2927.946663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.09503 -39.10492 -37.87325 -34.82464 -34.60105 -31.96270 -30.50339 -29.89560 -28.86832 -27.01730 -25.02549 -23.85068 -23.37921 -22.18352 -21.09071 -18.75186 -18.52020 -17.34904 -16.99503 -16.85160 -16.55014 -15.92584 -15.51259 -15.37726 -15.25050 -14.67362 -14.38232 -14.06861 -13.99962 -13.72767 -13.46101 -13.27015 -13.07953 -12.78570 -12.71452 -12.50904 -12.47565 -12.34188 -12.16740 -11.84712 -11.78743 -11.64894 -11.46340 -11.22542 -10.63754 -9.71428 -9.05987 -8.99798 -8.22066 -6.31960 0.41399 0.56804 1.39291 1.40512 1.54264 2.33570 2.39362 2.85584 3.10204 3.28343 3.81902 3.89902 4.04343 4.12463 4.14021 4.29511 4.32124 4.44018 4.47803 4.50713 4.54649 4.64386 4.68649 4.70233 4.81723 4.85084 5.04728 5.10673 5.12206 5.14988 5.19255 5.28679 5.39633 5.45311 5.54671 5.63105 5.72223 5.95358 6.03630 6.30711 6.55734 6.66664 6.83976 7.37625 8.89312 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.023196 B = 0.003797 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.808824 B = 7371.558133 C = 8067.496307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.047 4.047 4 C -0.165 4.165 5 C -0.078 4.078 6 C -0.226 4.226 7 C 0.115 3.885 8 O -0.324 6.324 9 C 0.074 3.926 10 C 0.051 3.949 11 N -0.549 5.549 12 C 0.039 3.961 13 C 0.208 3.792 14 C -0.524 4.524 15 H 0.060 0.940 16 C 0.001 3.999 17 N -0.935 5.935 18 Si 0.970 3.030 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.278 1.278 22 C -0.178 4.178 23 H 0.043 0.957 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.138 0.862 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.018 0.982 36 H 0.055 0.945 37 H 0.074 0.926 38 H -0.033 1.033 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 -5.856 -21.904 23.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.047 4.047 4 C -0.183 4.183 5 C -0.095 4.095 6 C -0.245 4.245 7 C 0.069 3.931 8 O -0.237 6.237 9 C -0.001 4.001 10 C -0.077 4.077 11 N -0.274 5.274 12 C -0.109 4.109 13 C 0.081 3.919 14 C -0.562 4.562 15 H 0.078 0.922 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.794 3.206 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.203 1.203 22 C -0.197 4.197 23 H 0.062 0.938 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.165 0.835 29 H 0.169 0.831 30 H 0.156 0.844 31 H 0.089 0.911 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.037 0.963 36 H 0.074 0.926 37 H 0.093 0.907 38 H -0.015 1.015 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.944 -6.342 -21.569 23.529 hybrid contribution 0.715 0.883 1.157 1.622 sum -6.229 -5.459 -20.411 22.028 Atomic orbital electron populations 1.21722 0.93929 1.02563 1.01878 1.20623 0.96790 0.91096 1.03736 1.19961 0.96040 0.96872 0.91865 1.21228 1.03534 0.95559 0.97968 1.21276 0.95817 0.94658 0.97792 1.21465 1.08984 1.01971 0.92087 1.19411 0.95424 0.92774 0.85443 1.86221 1.80440 1.28614 1.28458 1.22919 0.99481 0.80596 0.97063 1.22193 0.95974 0.95445 0.94112 1.61983 1.04966 1.56901 1.03513 1.22243 0.91375 0.98477 0.98782 1.19385 0.95413 0.93213 0.83840 1.21492 1.26509 1.14720 0.93485 0.92207 1.25918 0.97970 0.97519 0.98263 1.70085 1.44738 1.34132 1.08559 0.85324 0.78344 0.78638 0.78250 1.18938 1.20074 1.20347 1.20470 1.06840 0.93215 0.99200 0.93799 0.92053 0.90842 0.88982 0.91236 0.83515 0.83085 0.84392 0.91074 0.89485 0.92044 0.91584 0.96333 0.92627 0.90749 1.01502 0.98061 0.92624 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.90 71.98 0.71 -1.45 16 2 C -0.09 -1.44 6.06 29.85 0.18 -1.26 16 3 C -0.05 -1.06 5.13 -19.88 -0.10 -1.16 16 4 C -0.16 -3.13 9.70 22.28 0.22 -2.92 16 5 C -0.08 -1.50 10.04 22.25 0.22 -1.28 16 6 C -0.23 -5.43 9.04 22.36 0.20 -5.23 16 7 C 0.12 3.49 6.69 22.50 0.15 3.64 16 8 O -0.32 -11.44 10.08 -92.43 -0.93 -12.37 16 9 C 0.07 2.19 4.79 71.98 0.35 2.53 16 10 C 0.05 1.85 5.34 86.30 0.46 2.31 16 11 N -0.55 -24.91 4.70 -927.05 -4.36 -29.26 16 12 C 0.04 1.55 9.14 127.69 1.17 2.72 16 13 C 0.21 11.50 4.72 85.56 0.40 11.90 16 14 C -0.52 -30.84 8.46 25.60 0.22 -30.62 16 15 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 16 C 0.00 0.07 5.46 84.66 0.46 0.53 16 17 N -0.93 -57.35 13.29 21.45 0.28 -57.06 16 18 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 C -0.18 -5.14 9.64 22.37 0.22 -4.92 16 23 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 1.19 8.09 -2.38 -0.02 1.17 16 27 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 28 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 29 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 30 H 0.14 2.80 6.30 -2.91 -0.02 2.79 16 31 H 0.07 1.91 5.87 -2.39 -0.01 1.90 16 32 H 0.09 2.00 7.65 -2.39 -0.02 1.99 16 33 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 34 H 0.07 2.54 7.93 -2.39 -0.02 2.52 16 35 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 2.40 6.76 -2.38 -0.02 2.39 16 37 H 0.07 2.46 6.37 -2.39 -0.02 2.44 16 38 H -0.03 -1.91 8.12 -2.39 -0.02 -1.93 16 39 H 0.00 0.08 7.93 -2.39 -0.02 0.06 16 40 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 41 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -69.52 336.44 2.86 -66.66 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.98 Total: 9.78 kcal Atomic # 6 Polarization: -30.06 SS G_CDS: 4.86 Total: -25.21 kcal Atomic # 7 Polarization: -82.25 SS G_CDS: -4.07 Total: -86.33 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: -0.93 Total: -12.37 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.52 2.86 -66.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078645314.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.482 kcal (2) G-P(sol) polarization free energy of solvation -69.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds