Wall clock time and date at job start Mon Mar 30 2020 00:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38144 * 120.02628 * 2 1 4 4 C 1.38272 * 120.05615 * 179.70256 * 3 2 1 5 5 C 1.38266 * 120.11218 * 0.30302 * 4 3 2 6 6 C 1.38145 * 120.05300 * 359.97192 * 5 4 3 7 7 C 1.50702 * 120.02629 * 180.02562 * 6 5 4 8 8 C 1.38735 * 119.94822 * 0.02562 * 6 5 4 9 9 O 1.35900 * 120.05750 * 180.02562 * 8 6 5 10 10 C 1.42900 * 116.99949 * 89.99977 * 9 8 6 11 11 C 1.53001 * 109.46955 * 179.97438 * 10 9 8 12 12 C 1.52994 * 109.47141 * 179.97438 * 11 10 9 13 13 N 1.46501 * 109.47266 * 180.02562 * 12 11 10 14 14 C 1.46496 * 120.00012 * 270.00261 * 13 12 11 15 15 C 1.36934 * 119.99987 * 90.00146 * 13 12 11 16 16 H 1.08003 * 120.00370 * 20.36219 * 15 13 12 17 17 C 1.38813 * 120.00151 * 200.36241 * 15 13 12 18 18 N 1.31620 * 119.99934 * 14.98728 * 17 15 13 19 19 Si 1.86796 * 120.00080 * 194.98624 * 17 15 13 20 20 H 1.48495 * 109.47093 * 85.00470 * 19 17 15 21 21 H 1.48509 * 109.46961 * 205.00344 * 19 17 15 22 22 H 1.48499 * 109.47472 * 325.00224 * 19 17 15 23 23 H 1.09000 * 109.47293 * 90.00086 * 1 2 3 24 24 H 1.09002 * 109.46730 * 209.99470 * 1 2 3 25 25 H 1.08995 * 109.46927 * 329.99251 * 1 2 3 26 26 H 1.08000 * 119.97114 * 359.97438 * 3 2 1 27 27 H 1.07998 * 119.94598 * 180.27772 * 4 3 2 28 28 H 1.07996 * 119.97717 * 179.97438 * 5 4 3 29 29 H 1.09003 * 109.47024 * 90.00364 * 7 6 5 30 30 H 1.09006 * 109.47036 * 209.99913 * 7 6 5 31 31 H 1.08998 * 109.46988 * 330.00169 * 7 6 5 32 32 H 1.08998 * 109.47044 * 300.00036 * 10 9 8 33 33 H 1.08997 * 109.47085 * 59.99929 * 10 9 8 34 34 H 1.09003 * 109.47250 * 300.00449 * 11 10 9 35 35 H 1.09000 * 109.46919 * 59.99665 * 11 10 9 36 36 H 1.09003 * 109.47467 * 300.00379 * 12 11 10 37 37 H 1.09000 * 109.47435 * 60.00045 * 12 11 10 38 38 H 1.08997 * 109.47513 * 95.09267 * 14 13 12 39 39 H 1.09004 * 109.47123 * 215.09327 * 14 13 12 40 40 H 1.09005 * 109.46977 * 335.09116 * 14 13 12 41 41 H 0.96998 * 120.00382 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1960 0.0000 4 6 3.5810 1.1968 0.0062 5 6 4.2753 0.0011 0.0061 6 6 3.5887 -1.1976 0.0004 7 6 4.3460 -2.5005 0.0009 8 6 2.2013 -1.2011 -0.0058 9 8 1.5236 -2.3791 -0.0109 10 6 1.1944 -2.9436 1.2599 11 6 0.4384 -4.2577 1.0537 12 6 0.0865 -4.8625 2.4142 13 7 -0.6370 -6.1211 2.2168 14 6 -2.0984 -6.1177 2.1148 15 6 0.0529 -7.3006 2.1276 16 1 1.0574 -7.3696 2.5183 17 6 -0.5389 -8.4076 1.5349 18 7 -1.6234 -8.2616 0.8036 19 14 0.2041 -10.1045 1.7752 20 1 -0.3009 -10.6910 3.0425 21 1 -0.1799 -10.9786 0.6376 22 1 1.6836 -9.9931 1.8363 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8901 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 1.6582 2.1313 -0.0004 27 1 4.1196 2.1329 0.0107 28 1 5.3552 0.0042 0.0106 29 1 4.5240 -2.8169 1.0287 30 1 3.7615 -3.2608 -0.5173 31 1 5.3003 -2.3662 -0.5084 32 1 2.1094 -3.1346 1.8206 33 1 0.5666 -2.2469 1.8153 34 1 -0.4766 -4.0663 0.4930 35 1 1.0658 -4.9545 0.4980 36 1 1.0017 -5.0539 2.9745 37 1 -0.5409 -4.1658 2.9703 38 1 -2.3893 -6.0892 1.0648 39 1 -2.4970 -7.0203 2.5780 40 1 -2.4962 -5.2410 2.6260 41 1 -2.0372 -9.0351 0.3898 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078674172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:19 Heat of formation + Delta-G solvation = -6.786718 kcal Electronic energy + Delta-G solvation = -19621.502893 eV Core-core repulsion = 16694.960971 eV Total energy + Delta-G solvation = -2926.541922 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16369 -37.36629 -35.77771 -33.61496 -32.54321 -31.10832 -30.07580 -27.16366 -26.67936 -25.90385 -25.12889 -22.12026 -21.57634 -20.91012 -20.17561 -17.56484 -16.72965 -16.43914 -15.52719 -15.04773 -14.64292 -14.60570 -14.06681 -13.64615 -13.33909 -13.15235 -13.04587 -12.97344 -12.75535 -12.61262 -12.05209 -11.92825 -11.61479 -11.51408 -11.27290 -11.06381 -10.89226 -10.77829 -10.62399 -10.43565 -10.07666 -9.88893 -9.77264 -9.51525 -8.65349 -8.53451 -8.47039 -6.76893 -5.70092 -3.13756 1.18318 1.26167 3.39923 3.43692 3.46904 3.48009 4.02347 4.53433 4.72271 4.76710 4.87969 5.16896 5.33026 5.37460 5.38930 5.47715 5.51552 5.54684 5.61962 5.64375 5.67305 5.75629 5.78041 6.01659 6.08300 6.10162 6.25253 6.34287 6.37537 6.41794 6.44973 6.56385 6.74823 6.79767 6.89167 7.11929 7.39863 7.74887 7.78534 7.83642 8.41445 9.25901 9.89815 10.37918 11.35237 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030445 B = 0.003903 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.458668 B = 7172.755252 C = 7801.437904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.117 4.117 4 C -0.126 4.126 5 C -0.117 4.117 6 C -0.101 4.101 7 C -0.114 4.114 8 C 0.101 3.899 9 O -0.333 6.333 10 C 0.072 3.928 11 C -0.136 4.136 12 C 0.157 3.843 13 N -0.600 5.600 14 C 0.163 3.837 15 C -0.255 4.255 16 H 0.070 0.930 17 C 0.001 3.999 18 N -0.907 5.907 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.280 1.280 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.123 0.877 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.044 0.956 37 H 0.037 0.963 38 H 0.029 0.971 39 H 0.043 0.957 40 H -0.002 1.002 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.237 18.107 -0.439 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.103 4.103 3 C -0.135 4.135 4 C -0.144 4.144 5 C -0.135 4.135 6 C -0.101 4.101 7 C -0.171 4.171 8 C 0.057 3.943 9 O -0.250 6.250 10 C -0.002 4.002 11 C -0.177 4.177 12 C 0.029 3.971 13 N -0.323 5.323 14 C 0.018 3.982 15 C -0.385 4.385 16 H 0.088 0.912 17 C -0.197 4.197 18 N -0.552 5.552 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.218 1.218 22 H -0.206 1.206 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.082 0.918 26 H 0.140 0.860 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.062 0.938 40 H 0.016 0.984 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.044 17.833 -0.657 19.574 hybrid contribution 0.454 -0.769 0.049 0.894 sum 8.498 17.064 -0.608 19.073 Atomic orbital electron populations 1.20716 0.90652 1.02779 1.02686 1.20274 0.96837 0.92535 1.00636 1.20896 0.94160 0.97014 1.01478 1.21080 0.94231 0.97893 1.01173 1.20909 0.99647 0.91562 1.01408 1.20285 0.93197 0.96218 1.00439 1.20729 0.99453 0.94412 1.02512 1.18479 0.89494 0.85705 1.00609 1.86075 1.74269 1.34116 1.30544 1.22920 0.98442 0.95556 0.83320 1.22391 0.99872 0.92958 1.02467 1.20707 0.95666 0.87947 0.92753 1.44004 1.02178 1.01520 1.84570 1.20808 0.82357 0.96227 0.98821 1.19231 0.99507 0.87616 1.32151 0.91248 1.24978 0.98325 0.98799 0.97645 1.70087 1.22337 1.28821 1.33970 0.86272 0.78649 0.84413 0.77213 1.21479 1.21756 1.20553 0.90963 0.90956 0.91789 0.85961 0.86086 0.85946 0.91238 0.90423 0.91671 0.93439 0.93606 0.91882 0.91020 0.93770 0.94427 0.95250 0.93814 0.98371 0.93750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.79 36.01 0.35 -0.95 16 2 C -0.10 -1.33 5.89 -104.47 -0.62 -1.94 16 3 C -0.12 -1.28 9.70 -39.60 -0.38 -1.66 16 4 C -0.13 -1.28 10.04 -39.56 -0.40 -1.68 16 5 C -0.12 -1.29 9.70 -39.61 -0.38 -1.68 16 6 C -0.10 -1.33 5.89 -104.47 -0.62 -1.94 16 7 C -0.11 -1.38 9.79 36.01 0.35 -1.03 16 8 C 0.10 1.48 5.67 -39.21 -0.22 1.26 16 9 O -0.33 -5.51 8.33 -19.43 -0.16 -5.67 16 10 C 0.07 1.15 5.69 37.16 0.21 1.36 16 11 C -0.14 -2.63 5.91 -26.73 -0.16 -2.79 16 12 C 0.16 3.24 5.71 -4.04 -0.02 3.21 16 13 N -0.60 -15.36 2.93 -181.12 -0.53 -15.89 16 14 C 0.16 4.08 9.02 59.84 0.54 4.62 16 15 C -0.26 -7.11 9.68 -15.06 -0.15 -7.26 16 16 H 0.07 1.88 7.86 -52.48 -0.41 1.47 16 17 C 0.00 0.02 5.06 -17.43 -0.09 -0.07 16 18 N -0.91 -26.81 10.67 55.49 0.59 -26.22 16 19 Si 0.90 22.07 29.58 -169.99 -5.03 17.04 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.07 0.93 6.30 -51.93 -0.33 0.60 16 25 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 26 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.08 1.06 7.53 -51.93 -0.39 0.67 16 31 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.67 7.23 -51.93 -0.38 0.30 16 34 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.04 0.88 8.03 -51.93 -0.42 0.46 16 37 H 0.04 0.70 7.86 -51.93 -0.41 0.29 16 38 H 0.03 0.79 7.40 -51.93 -0.38 0.41 16 39 H 0.04 1.17 7.21 -51.93 -0.37 0.79 16 40 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -30.70 336.98 -8.48 -39.18 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -6.85 Total: -2.97 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: -1.58 Total: -10.54 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.06 Total: -42.12 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.16 Total: -5.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.03 Total: 17.04 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.70 -8.48 -39.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078674172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.398 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds