Wall clock time and date at job start Mon Mar 30 2020 00:15:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00126 * 2 1 4 4 H 1.48497 * 109.47300 * 239.99610 * 3 2 1 5 5 H 1.48503 * 109.46866 * 0.02562 * 3 2 1 6 6 H 1.48510 * 109.46948 * 119.99844 * 3 2 1 7 7 C 1.37881 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00411 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99574 * 359.72510 * 7 2 1 10 10 C 1.53001 * 109.46926 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46805 * 180.02562 * 10 9 7 12 12 C 1.39772 * 111.00354 * 65.70180 * 11 10 9 13 13 C 1.54430 * 111.76886 * 189.12780 * 12 11 10 14 14 C 1.50755 * 109.02658 * 282.58766 * 13 12 11 15 15 C 1.54164 * 112.61287 * 93.01626 * 14 13 12 16 16 C 1.53821 * 111.96759 * 318.49239 * 15 14 13 17 17 C 1.47632 * 110.99728 * 194.59353 * 11 10 9 18 18 H 1.09002 * 109.74716 * 269.98351 * 17 11 10 19 19 C 1.50706 * 109.74626 * 30.70321 * 17 11 10 20 20 C 1.34516 * 125.78636 * 230.01424 * 19 17 11 21 21 C 1.41387 * 106.83733 * 180.02562 * 20 19 17 22 22 C 1.34519 * 106.84095 * 0.02562 * 21 20 19 23 23 O 1.34296 * 125.78871 * 49.71775 * 19 17 11 24 24 H 0.96998 * 119.99970 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47129 * 300.00178 * 9 7 2 26 26 H 1.09007 * 109.46969 * 60.00176 * 9 7 2 27 27 H 1.08997 * 109.46817 * 300.00093 * 10 9 7 28 28 H 1.08996 * 109.47029 * 59.99807 * 10 9 7 29 29 H 1.09003 * 109.02066 * 309.71534 * 12 11 10 30 30 H 1.08995 * 109.02293 * 68.60802 * 12 11 10 31 31 H 1.08997 * 109.54910 * 42.45383 * 13 12 11 32 32 H 1.09004 * 109.54596 * 162.63208 * 13 12 11 33 33 H 1.09006 * 108.85655 * 213.82932 * 14 13 12 34 34 H 1.09009 * 108.85114 * 332.20764 * 14 13 12 35 35 H 1.09001 * 108.98129 * 79.12889 * 15 14 13 36 36 H 1.08995 * 108.98489 * 197.93135 * 15 14 13 37 37 H 1.09004 * 109.05348 * 79.59523 * 16 15 14 38 38 H 1.09003 * 109.04941 * 198.48306 * 16 15 14 39 39 H 1.07994 * 126.58192 * 359.97355 * 20 19 17 40 40 H 1.07995 * 126.57966 * 180.02562 * 21 20 19 41 41 H 1.07994 * 125.79373 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0074 10 6 2.2453 -3.6621 0.0072 11 7 1.5107 -4.9342 0.0133 12 6 0.7912 -5.1029 -1.1731 13 6 -0.1615 -6.3160 -1.0976 14 6 0.6384 -7.5810 -1.2778 15 6 1.0932 -8.1909 0.0631 16 6 1.5761 -7.1147 1.0503 17 6 2.4025 -6.0583 0.3606 18 1 2.8452 -6.4710 -0.5460 19 6 3.4904 -5.5780 1.2863 20 6 4.8086 -5.7960 1.1308 21 6 5.4582 -5.1731 2.2213 22 6 4.4979 -4.6121 2.9781 23 8 3.3086 -4.8549 2.4033 24 1 -0.4850 0.8400 0.0004 25 1 0.6281 -2.5543 0.9001 26 1 0.6207 -2.5594 -0.8799 27 1 2.8686 -3.6070 -0.8853 28 1 2.8753 -3.6016 0.8946 29 1 0.2063 -4.2033 -1.3648 30 1 1.4912 -5.2529 -1.9949 31 1 -0.6552 -6.3320 -0.1260 32 1 -0.9105 -6.2411 -1.8859 33 1 0.0274 -8.3117 -1.8079 34 1 1.5191 -7.3581 -1.8802 35 1 0.2578 -8.7312 0.5084 36 1 1.9081 -8.8902 -0.1237 37 1 0.7098 -6.6423 1.5136 38 1 2.1787 -7.5878 1.8257 39 1 5.2802 -6.3428 0.3278 40 1 6.5212 -5.1517 2.4103 41 1 4.6568 -4.0557 3.8899 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078830694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:15:29 Heat of formation + Delta-G solvation = -4.242903 kcal Electronic energy + Delta-G solvation = -20777.264456 eV Core-core repulsion = 17850.832842 eV Total energy + Delta-G solvation = -2926.431614 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.60461 -40.47613 -36.36065 -34.82096 -34.19934 -33.55706 -31.57662 -29.87936 -27.67267 -26.08274 -25.52847 -23.08940 -22.39695 -22.10647 -20.93297 -20.26406 -18.82589 -18.11774 -17.28860 -16.72170 -16.53796 -16.09263 -15.76417 -15.73072 -15.01137 -14.89679 -14.32786 -14.14287 -13.67660 -13.66031 -13.50018 -13.38076 -13.01898 -12.94498 -12.79271 -12.58164 -12.32607 -12.13885 -11.76347 -11.54441 -11.36651 -11.27384 -11.22463 -11.09664 -10.76649 -10.52874 -9.33960 -9.08298 -8.21350 -6.32948 0.84959 1.37281 1.41006 1.49083 1.74418 2.17373 2.38778 3.00750 3.11357 3.59102 3.87046 4.01581 4.07738 4.12282 4.20856 4.24012 4.29491 4.41550 4.46522 4.56916 4.66191 4.76406 4.89906 4.94308 4.97774 5.01115 5.02910 5.07766 5.21326 5.25462 5.28683 5.33329 5.41570 5.47219 5.55739 5.65436 5.67151 5.77259 6.11159 6.22834 6.37415 6.60785 6.82969 7.35589 8.90665 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.006683 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.933815 B = 4188.939135 C = 5495.832259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.042 3.958 10 C 0.082 3.918 11 N -0.554 5.554 12 C 0.070 3.930 13 C -0.111 4.111 14 C -0.119 4.119 15 C -0.108 4.108 16 C -0.108 4.108 17 C 0.175 3.825 18 H 0.083 0.917 19 C -0.018 4.018 20 C -0.218 4.218 21 C -0.220 4.220 22 C -0.054 4.054 23 O -0.188 6.188 24 H 0.265 0.735 25 H -0.012 1.012 26 H -0.004 1.004 27 H 0.009 0.991 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.016 0.984 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.163 0.837 40 H 0.172 0.828 41 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.821 -16.804 1.217 18.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.584 4.584 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.044 4.044 11 N -0.279 5.279 12 C -0.060 4.060 13 C -0.149 4.149 14 C -0.156 4.156 15 C -0.146 4.146 16 C -0.146 4.146 17 C 0.068 3.932 18 H 0.100 0.900 19 C -0.068 4.068 20 C -0.238 4.238 21 C -0.238 4.238 22 C -0.121 4.121 23 O -0.084 6.084 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.014 0.986 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.034 0.966 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.180 0.820 40 H 0.190 0.810 41 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.049 -16.612 1.641 17.755 hybrid contribution 0.899 1.300 -0.589 1.686 sum 6.948 -15.312 1.052 16.847 Atomic orbital electron populations 1.70100 1.07772 1.27876 1.51219 1.25941 0.95758 1.03202 0.94485 0.85508 0.78341 0.78048 0.79192 1.19160 1.20444 1.19182 1.21522 0.93185 0.92398 1.51261 0.92841 1.18899 0.94013 0.91882 0.94784 1.22074 0.95386 0.88300 0.98689 1.58980 1.29220 1.02114 1.37605 1.21061 0.96119 0.99702 0.89070 1.21466 0.97529 0.93239 1.02689 1.21428 0.99804 0.96741 0.97629 1.21880 1.01514 0.96759 0.94435 1.21440 0.99441 0.95154 0.98542 1.20036 0.88331 0.90781 0.94019 0.89964 1.22510 0.96356 0.98498 0.89431 1.21862 0.92182 1.07084 1.02637 1.22096 1.01533 1.03748 0.96456 1.24768 0.81596 1.04145 1.01608 1.84167 1.34380 1.56391 1.33490 0.92671 0.99320 0.98615 0.97310 0.91414 0.92914 0.96620 0.91580 0.90427 0.90054 0.92743 0.90651 0.90599 0.91991 0.91225 0.81972 0.81021 0.75775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.25 13.29 21.45 0.28 -57.97 16 2 C 0.00 0.25 5.46 84.66 0.46 0.72 16 3 Si 0.97 45.47 29.54 68.60 2.03 47.50 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.55 -32.70 9.11 25.60 0.23 -32.47 16 8 H 0.05 3.11 7.74 -2.91 -0.02 3.08 16 9 C 0.04 2.36 4.87 29.85 0.15 2.51 16 10 C 0.08 3.82 4.43 86.30 0.38 4.20 16 11 N -0.55 -21.36 3.93 -892.30 -3.50 -24.86 16 12 C 0.07 2.48 4.82 88.07 0.42 2.90 16 13 C -0.11 -2.99 5.65 30.35 0.17 -2.82 16 14 C -0.12 -2.46 5.31 30.26 0.16 -2.30 16 15 C -0.11 -2.11 5.91 31.27 0.18 -1.92 16 16 C -0.11 -2.80 4.97 30.16 0.15 -2.65 16 17 C 0.17 5.41 2.33 43.32 0.10 5.51 16 18 H 0.08 2.31 6.64 -2.39 -0.02 2.30 16 19 C -0.02 -0.58 3.97 24.84 0.10 -0.49 16 20 C -0.22 -6.16 10.79 22.19 0.24 -5.92 16 21 C -0.22 -5.70 10.91 22.19 0.24 -5.46 16 22 C -0.05 -1.53 12.09 66.97 0.81 -0.72 16 23 O -0.19 -6.77 9.03 -2.46 -0.02 -6.80 16 24 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H 0.00 -0.26 6.34 -2.38 -0.02 -0.28 16 27 H 0.01 0.41 8.11 -2.39 -0.02 0.39 16 28 H 0.07 3.23 4.76 -2.39 -0.01 3.22 16 29 H 0.05 2.23 5.88 -2.39 -0.01 2.22 16 30 H 0.02 0.54 7.54 -2.39 -0.02 0.52 16 31 H 0.07 1.90 7.11 -2.39 -0.02 1.89 16 32 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.05 1.16 6.58 -2.38 -0.02 1.15 16 35 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.06 1.88 7.26 -2.38 -0.02 1.86 16 38 H 0.07 1.70 7.71 -2.39 -0.02 1.68 16 39 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 40 H 0.17 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.23 4.67 8.06 -2.91 -0.02 4.65 16 Total: -1.00 -70.01 316.57 3.59 -66.42 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: 1.00 Total: 14.61 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 3.81 Total: -38.91 kcal Atomic # 7 Polarization: -79.61 SS G_CDS: -3.22 Total: -82.83 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: -0.02 Total: -6.80 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.01 3.59 -66.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078830694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.181 kcal (2) G-P(sol) polarization free energy of solvation -70.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds