Wall clock time and date at job start Mon Mar 30 2020 00:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38165 * 120.03161 * 2 1 4 4 C 1.38247 * 120.05686 * 180.29742 * 3 2 1 5 5 C 1.38289 * 120.10972 * 359.67142 * 4 3 2 6 6 C 1.38121 * 120.05530 * 0.02562 * 5 4 3 7 7 C 1.38718 * 120.02679 * 179.67126 * 2 1 3 8 8 O 1.35896 * 120.05208 * 0.02562 * 7 2 1 9 9 C 1.42905 * 116.99464 * 179.72494 * 8 7 2 10 10 C 1.53008 * 109.46632 * 180.02562 * 9 8 7 11 11 N 1.46892 * 109.47341 * 65.70885 * 10 9 8 12 12 C 1.46897 * 111.00040 * 200.09345 * 11 10 9 13 13 C 1.46905 * 110.99869 * 76.14143 * 11 10 9 14 14 H 1.08997 * 109.46981 * 309.99689 * 13 11 10 15 15 C 1.53000 * 109.47006 * 70.00135 * 13 11 10 16 16 C 1.50701 * 109.46819 * 189.99979 * 13 11 10 17 17 H 1.07999 * 120.00105 * 245.15202 * 16 13 11 18 18 C 1.37878 * 120.00124 * 65.16009 * 16 13 11 19 19 N 1.31513 * 119.99901 * 176.46373 * 18 16 13 20 20 Si 1.86803 * 119.99741 * 356.45940 * 18 16 13 21 21 H 1.48500 * 109.46918 * 274.71665 * 20 18 16 22 22 H 1.48498 * 109.47064 * 34.72249 * 20 18 16 23 23 H 1.48504 * 109.46790 * 154.72069 * 20 18 16 24 24 H 1.09000 * 109.47434 * 270.32476 * 1 2 3 25 25 H 1.09007 * 109.46982 * 30.32853 * 1 2 3 26 26 H 1.08998 * 109.47418 * 150.32116 * 1 2 3 27 27 H 1.08002 * 119.97065 * 359.97438 * 3 2 1 28 28 H 1.08005 * 119.94175 * 179.69870 * 4 3 2 29 29 H 1.08001 * 119.97021 * 180.02562 * 5 4 3 30 30 H 1.07998 * 120.02601 * 179.97438 * 6 5 4 31 31 H 1.08997 * 109.47200 * 60.00375 * 9 8 7 32 32 H 1.08996 * 109.46981 * 299.99614 * 9 8 7 33 33 H 1.08998 * 109.47021 * 305.70302 * 10 9 8 34 34 H 1.09001 * 109.46619 * 185.71189 * 10 9 8 35 35 H 1.08995 * 109.47374 * 301.73677 * 12 11 10 36 36 H 1.08998 * 109.47051 * 61.73762 * 12 11 10 37 37 H 1.09002 * 109.47314 * 181.73583 * 12 11 10 38 38 H 1.09007 * 109.46794 * 175.56362 * 15 13 11 39 39 H 1.08996 * 109.46767 * 295.56383 * 15 13 11 40 40 H 1.08998 * 109.47573 * 55.56745 * 15 13 11 41 41 H 0.97010 * 119.99747 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1962 0.0000 4 6 3.5809 1.1968 -0.0062 5 6 4.2752 0.0008 -0.0056 6 6 3.5886 -1.1976 0.0007 7 6 2.2011 -1.2010 0.0069 8 8 1.5232 -2.3788 0.0131 9 6 2.3033 -3.5762 0.0139 10 6 1.3729 -4.7909 0.0206 11 7 0.6186 -4.8368 -1.2390 12 6 -0.5888 -5.6619 -1.0998 13 6 1.4621 -5.3199 -2.3405 14 1 2.3976 -4.7607 -2.3538 15 6 1.7597 -6.8073 -2.1404 16 6 0.7408 -5.1235 -3.6490 17 1 0.4432 -5.9801 -4.2355 18 6 0.4609 -3.8501 -4.0975 19 7 -0.1061 -3.6762 -5.2713 20 14 0.8869 -2.3719 -3.0378 21 1 -0.2170 -2.1165 -2.0779 22 1 2.1405 -2.6440 -2.2897 23 1 1.0757 -1.1802 -3.9035 24 1 -0.3634 0.0058 1.0276 25 1 -0.3633 0.8871 -0.5190 26 1 -0.3634 -0.8928 -0.5088 27 1 1.6585 2.1315 -0.0004 28 1 4.1195 2.1329 -0.0111 29 1 5.3552 0.0039 -0.0100 30 1 4.1313 -2.1314 0.0008 31 1 2.9355 -3.5974 0.9016 32 1 2.9287 -3.6029 -0.8784 33 1 0.6787 -4.7122 0.8572 34 1 1.9642 -5.7008 0.1235 35 1 -0.3071 -6.6697 -0.7951 36 1 -1.2431 -5.2240 -0.3460 37 1 -1.1122 -5.7040 -2.0550 38 1 2.3189 -7.1843 -2.9968 39 1 2.3498 -6.9409 -1.2338 40 1 0.8226 -7.3562 -2.0483 41 1 -0.3034 -2.7803 -5.5867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079601648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:39 Heat of formation + Delta-G solvation = -0.734074 kcal Electronic energy + Delta-G solvation = -20962.295756 eV Core-core repulsion = 18036.016296 eV Total energy + Delta-G solvation = -2926.279460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.00812 -37.88604 -36.67164 -32.67375 -32.36851 -30.62116 -29.60889 -28.75671 -26.51802 -25.57217 -24.58205 -22.76327 -21.48108 -21.01153 -18.87360 -17.81442 -16.83538 -15.96557 -15.74387 -15.46130 -14.78984 -14.44706 -14.27667 -13.70294 -13.48175 -12.99683 -12.94920 -12.81706 -12.71017 -12.32758 -12.02584 -11.77318 -11.55893 -11.30092 -11.23675 -11.02943 -10.86867 -10.81024 -10.38944 -10.28204 -10.04311 -9.87288 -9.49880 -9.02849 -8.66436 -8.42305 -7.81385 -7.21473 -5.94342 -4.03976 1.48135 1.65193 3.54250 3.65825 3.72075 3.87350 3.94685 4.69425 4.78417 4.95770 4.98498 5.18263 5.33877 5.36902 5.43633 5.57380 5.62665 5.70907 5.76430 5.86492 5.91662 5.93593 6.06192 6.10538 6.17046 6.21653 6.28167 6.33105 6.47270 6.50684 6.54030 6.63562 6.71935 6.79082 6.96646 7.01538 7.16971 7.70293 7.78128 8.02576 8.24589 8.61409 9.02732 9.69318 11.13176 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.007779 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.403967 B = 3598.428418 C = 4079.281847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.166 4.166 5 C -0.088 4.088 6 C -0.209 4.209 7 C 0.140 3.860 8 O -0.288 6.288 9 C 0.060 3.940 10 C 0.046 3.954 11 N -0.530 5.530 12 C 0.039 3.961 13 C 0.169 3.831 14 H 0.041 0.959 15 C -0.166 4.166 16 C -0.513 4.513 17 H 0.069 0.931 18 C 0.076 3.924 19 N -0.903 5.903 20 Si 0.937 3.063 21 H -0.265 1.265 22 H -0.271 1.271 23 H -0.326 1.326 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.013 0.987 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.027 0.973 40 H 0.050 0.950 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.663 5.186 13.534 15.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.104 4.104 4 C -0.184 4.184 5 C -0.106 4.106 6 C -0.227 4.227 7 C 0.093 3.907 8 O -0.200 6.200 9 C -0.016 4.016 10 C -0.082 4.082 11 N -0.255 5.255 12 C -0.109 4.109 13 C 0.064 3.936 14 H 0.059 0.941 15 C -0.225 4.225 16 C -0.551 4.551 17 H 0.087 0.913 18 C -0.128 4.128 19 N -0.540 5.540 20 Si 0.769 3.231 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.256 1.256 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.142 0.858 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.143 0.857 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.031 0.969 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.223 5.710 13.298 15.386 hybrid contribution 0.751 -0.085 0.568 0.946 sum 5.974 5.625 13.866 16.112 Atomic orbital electron populations 1.20770 0.90634 1.03635 1.02021 1.19324 0.96690 0.90529 1.05808 1.20843 0.94127 0.96639 0.98824 1.20935 0.94177 0.97812 1.05462 1.20867 0.99452 0.91988 0.98327 1.21261 0.93235 0.99365 1.08879 1.18931 0.90461 0.86534 0.94728 1.86250 1.35071 1.11620 1.87067 1.23019 0.94549 0.83274 1.00712 1.22133 0.96890 0.93936 0.95260 1.62624 1.07287 1.52923 1.02644 1.22129 0.92865 0.93515 1.02344 1.19917 0.93639 0.89792 0.90278 0.94094 1.22307 1.00361 1.00653 0.99211 1.20804 1.38934 0.93781 1.01627 0.91311 1.25146 0.93228 1.00069 0.94356 1.69988 1.42425 1.22619 1.18942 0.86070 0.80521 0.78630 0.77842 1.19114 1.19754 1.25615 0.91664 0.92039 0.89966 0.85755 0.86300 0.86210 0.85665 0.92839 0.91070 0.91188 0.92994 0.96900 0.93739 0.89977 0.92861 0.95434 0.93063 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.79 36.00 0.35 -1.48 16 2 C -0.12 -2.08 5.89 -104.47 -0.62 -2.70 16 3 C -0.09 -1.24 9.70 -39.60 -0.38 -1.62 16 4 C -0.17 -2.21 10.04 -39.56 -0.40 -2.61 16 5 C -0.09 -1.23 10.04 -39.61 -0.40 -1.63 16 6 C -0.21 -3.35 9.04 -39.44 -0.36 -3.70 16 7 C 0.14 2.53 5.34 -39.22 -0.21 2.32 16 8 O -0.29 -5.54 6.80 -19.41 -0.13 -5.67 16 9 C 0.06 1.03 4.09 37.16 0.15 1.18 16 10 C 0.05 0.80 5.27 -3.82 -0.02 0.78 16 11 N -0.53 -11.16 2.48 -236.29 -0.59 -11.74 16 12 C 0.04 0.77 8.60 60.06 0.52 1.29 16 13 C 0.17 3.87 1.59 -68.86 -0.11 3.76 16 14 H 0.04 0.97 5.55 -51.93 -0.29 0.69 16 15 C -0.17 -3.26 8.47 37.16 0.31 -2.94 16 16 C -0.51 -14.34 8.01 -34.44 -0.28 -14.61 16 17 H 0.07 2.08 7.99 -52.49 -0.42 1.67 16 18 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 19 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 20 Si 0.94 24.67 22.78 -169.99 -3.87 20.80 16 21 H -0.27 -6.98 5.63 56.52 0.32 -6.67 16 22 H -0.27 -6.72 3.73 56.52 0.21 -6.51 16 23 H -0.33 -9.04 7.11 56.52 0.40 -8.64 16 24 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 26 H 0.08 1.57 5.93 -51.93 -0.31 1.26 16 27 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 28 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.13 1.83 6.30 -52.49 -0.33 1.50 16 31 H 0.05 0.74 7.66 -51.93 -0.40 0.35 16 32 H 0.07 1.33 4.80 -51.93 -0.25 1.08 16 33 H 0.07 1.11 7.90 -51.93 -0.41 0.70 16 34 H 0.05 0.81 6.24 -51.93 -0.32 0.48 16 35 H 0.01 0.22 6.47 -51.93 -0.34 -0.11 16 36 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.08 1.82 7.12 -51.93 -0.37 1.45 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.03 0.46 6.61 -51.93 -0.34 0.12 16 40 H 0.05 0.99 6.19 -51.93 -0.32 0.67 16 41 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 307.55 15.07 4.63 4.63 Total: -1.00 -32.03 307.55 -7.17 -39.20 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -6.46 Total: 0.17 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -1.53 Total: -19.84 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.19 Total: -39.29 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.13 Total: -5.67 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -3.87 Total: 20.80 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.03 -7.17 -39.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079601648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.466 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds