Wall clock time and date at job start Mon Mar 30 2020 00:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34514 * 125.78881 * 2 1 4 4 C 1.41381 * 106.83836 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.58176 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47121 * 143.82813 * 5 4 3 7 7 C 1.52996 * 109.47240 * 263.83792 * 5 4 3 8 8 N 1.46902 * 109.46794 * 23.83485 * 5 4 3 9 9 C 1.46895 * 111.00083 * 157.69828 * 8 5 4 10 10 C 1.52992 * 109.47541 * 184.43148 * 9 8 5 11 11 C 1.50709 * 115.55190 * 276.60632 * 10 9 8 12 12 H 1.08003 * 119.99982 * 114.34687 * 11 10 9 13 13 C 1.37868 * 119.99946 * 294.34983 * 11 10 9 14 14 N 1.31515 * 120.00004 * 353.72423 * 13 11 10 15 15 Si 1.86799 * 120.00326 * 173.72220 * 13 11 10 16 16 H 1.48502 * 109.47188 * 89.99893 * 15 13 11 17 17 H 1.48495 * 109.47486 * 210.00045 * 15 13 11 18 18 H 1.48500 * 109.46976 * 330.00352 * 15 13 11 19 19 C 1.53007 * 117.50324 * 130.89462 * 10 9 8 20 20 C 1.53001 * 117.49813 * 62.27255 * 10 9 8 21 21 C 1.34517 * 106.84255 * 359.97438 * 4 3 2 22 22 C 1.50702 * 125.79285 * 180.02562 * 21 4 3 23 23 O 1.34295 * 125.78687 * 180.26526 * 2 1 3 24 24 H 1.09004 * 109.46951 * 89.99955 * 1 2 3 25 25 H 1.09002 * 109.47314 * 210.00357 * 1 2 3 26 26 H 1.09004 * 109.46844 * 330.00565 * 1 2 3 27 27 H 1.07996 * 126.57996 * 359.93747 * 3 2 1 28 28 H 1.08994 * 109.47350 * 59.99494 * 7 5 4 29 29 H 1.09002 * 109.47050 * 180.02562 * 7 5 4 30 30 H 1.09009 * 109.46666 * 299.99504 * 7 5 4 31 31 H 1.00903 * 111.00226 * 33.74199 * 8 5 4 32 32 H 1.08998 * 109.47416 * 304.43313 * 9 8 5 33 33 H 1.09004 * 109.46925 * 64.42992 * 9 8 5 34 34 H 0.96999 * 119.99998 * 185.00622 * 14 13 11 35 35 H 1.08998 * 117.49309 * 0.02562 * 19 10 9 36 36 H 1.08992 * 117.49913 * 145.02203 * 19 10 9 37 37 H 1.09003 * 117.50258 * 214.98308 * 20 10 9 38 38 H 1.08998 * 117.50119 * 359.97438 * 20 10 9 39 39 H 1.09001 * 109.47484 * 89.99520 * 22 21 4 40 40 H 1.08997 * 109.47155 * 209.99832 * 22 21 4 41 41 H 1.08998 * 109.46435 * 330.00036 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6320 0.0006 5 6 4.8733 1.4849 0.0003 6 1 5.6422 1.0070 0.6073 7 6 5.3818 1.6449 -1.4338 8 7 4.5599 2.8069 0.5590 9 6 5.7716 3.4656 1.0646 10 6 5.3917 4.7867 1.7360 11 6 5.2235 5.9625 0.8084 12 1 4.2522 6.4185 0.6851 13 6 6.3094 6.4561 0.1172 14 7 7.5127 5.9834 0.3585 15 14 6.0718 7.7964 -1.1621 16 1 6.1939 9.1268 -0.5139 17 1 7.1081 7.6629 -2.2173 18 1 4.7243 7.6649 -1.7723 19 6 5.9624 5.0612 3.1289 20 6 4.4804 4.7190 2.9632 21 6 3.5814 -0.7122 0.0015 22 6 4.7705 -1.6380 0.0030 23 8 2.2924 -1.0894 -0.0050 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.9666 2.1204 -0.0009 28 1 4.6128 2.1228 -2.0407 29 1 6.2807 2.2614 -1.4340 30 1 5.6144 0.6639 -1.8484 31 1 3.8582 2.7373 1.2808 32 1 6.2619 2.8169 1.7905 33 1 6.4514 3.6617 0.2353 34 1 8.2852 6.3798 -0.0739 35 1 6.6089 4.3006 3.5666 36 1 6.2165 6.0922 3.3744 37 1 3.7594 5.5251 3.0998 38 1 4.1512 3.7333 3.2919 39 1 5.0567 -1.8604 1.0309 40 1 4.5109 -2.5638 -0.5104 41 1 5.6042 -1.1592 -0.5107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:16 Heat of formation + Delta-G solvation = 26.926992 kcal Electronic energy + Delta-G solvation = -20106.701666 eV Core-core repulsion = 17181.621679 eV Total energy + Delta-G solvation = -2925.079986 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.45454 -37.39475 -35.61641 -32.88355 -32.31091 -31.88524 -29.50458 -29.06217 -25.77931 -24.85627 -24.20533 -22.21839 -21.11433 -20.35651 -19.17050 -18.61400 -16.49286 -16.18622 -15.90780 -14.92600 -14.46170 -14.44946 -13.85305 -13.48090 -13.35424 -13.29053 -13.11870 -12.78889 -12.67224 -12.65610 -12.23346 -11.77599 -11.60286 -11.54680 -11.41481 -11.05705 -10.88721 -10.79696 -10.46182 -10.31932 -10.16197 -9.40420 -9.24627 -8.84926 -8.45683 -8.04316 -7.99168 -7.48040 -5.94199 -3.96288 1.85291 2.80651 3.04404 3.34984 3.42048 3.47342 4.48421 4.72109 4.79033 4.99733 5.19244 5.20301 5.30474 5.40594 5.44542 5.47813 5.52987 5.64283 5.68262 5.78185 5.87363 5.97460 6.12318 6.19304 6.34549 6.36976 6.40187 6.46772 6.58665 6.68993 6.73439 6.75380 6.82710 7.00374 7.12679 7.35541 7.45011 7.70374 7.98840 8.05858 8.26439 8.56431 9.01131 9.65887 11.14508 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021857 B = 0.004980 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.754754 B = 5621.491188 C = 5649.546370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.034 4.034 3 C -0.182 4.182 4 C -0.161 4.161 5 C 0.154 3.846 6 H 0.039 0.961 7 C -0.132 4.132 8 N -0.667 5.667 9 C 0.107 3.893 10 C 0.059 3.941 11 C -0.474 4.474 12 H 0.058 0.942 13 C 0.069 3.931 14 N -0.885 5.885 15 Si 0.889 3.111 16 H -0.283 1.283 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.177 4.177 20 C -0.211 4.211 21 C -0.027 4.027 22 C -0.070 4.070 23 O -0.179 6.179 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.153 0.847 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.332 0.668 32 H -0.005 1.005 33 H 0.088 0.912 34 H 0.258 0.742 35 H 0.060 0.940 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.881 -13.643 -0.806 15.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.083 4.083 3 C -0.201 4.201 4 C -0.163 4.163 5 C 0.043 3.957 6 H 0.057 0.943 7 C -0.190 4.190 8 N -0.299 5.299 9 C -0.021 4.021 10 C 0.058 3.942 11 C -0.512 4.512 12 H 0.076 0.924 13 C -0.133 4.133 14 N -0.523 5.523 15 Si 0.717 3.283 16 H -0.210 1.210 17 H -0.213 1.213 18 H -0.198 1.198 19 C -0.215 4.215 20 C -0.249 4.249 21 C -0.077 4.077 22 C -0.127 4.127 23 O -0.077 6.077 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.171 0.829 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.150 0.850 32 H 0.013 0.987 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.758 -13.640 -1.542 15.768 hybrid contribution 0.224 0.483 0.228 0.579 sum -7.534 -13.158 -1.314 15.219 Atomic orbital electron populations 1.20229 0.85403 1.03671 1.03128 1.22318 0.93761 0.84212 1.07997 1.21501 0.91866 0.99676 1.07050 1.20386 0.96071 0.92718 1.07099 1.19810 0.90801 0.88445 0.96599 0.94346 1.21730 1.01738 1.00170 0.95315 1.60500 1.12579 1.17255 1.39527 1.21597 0.90011 0.92589 0.97916 1.18850 0.95830 0.93785 0.85716 1.20396 0.94748 1.12774 1.23296 0.92406 1.24917 0.95265 0.96599 0.96501 1.69967 0.97770 1.41061 1.43526 0.86646 0.77992 0.81929 0.81777 1.20961 1.21310 1.19786 1.22748 0.93456 1.00091 1.05216 1.22828 0.93689 0.99503 1.08858 1.22075 0.83173 0.94182 1.08264 1.20266 0.91711 0.97491 1.03188 1.83890 1.16227 1.35083 1.72546 0.90515 0.91079 0.89411 0.82889 0.92018 0.91915 0.93697 0.84987 0.98707 0.89365 0.93197 0.92163 0.90282 0.90561 0.92099 0.90491 0.90946 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.42 36.01 0.38 -0.26 16 2 C -0.03 -0.46 7.32 -35.62 -0.26 -0.72 16 3 C -0.18 -2.81 9.80 -39.70 -0.39 -3.20 16 4 C -0.16 -2.58 5.10 -104.74 -0.53 -3.11 16 5 C 0.15 2.66 2.60 -68.86 -0.18 2.48 16 6 H 0.04 0.66 7.68 -51.93 -0.40 0.26 16 7 C -0.13 -2.21 9.37 37.16 0.35 -1.87 16 8 N -0.67 -13.43 6.08 -107.96 -0.66 -14.09 16 9 C 0.11 2.47 5.36 -3.83 -0.02 2.45 16 10 C 0.06 1.46 1.50 -155.66 -0.23 1.22 16 11 C -0.47 -13.02 8.83 -34.44 -0.30 -13.33 16 12 H 0.06 1.61 7.82 -52.48 -0.41 1.20 16 13 C 0.07 1.90 5.26 -17.82 -0.09 1.81 16 14 N -0.89 -25.07 12.53 55.43 0.69 -24.38 16 15 Si 0.89 21.45 29.55 -169.99 -5.02 16.43 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 C -0.18 -4.17 9.88 -26.73 -0.26 -4.44 16 20 C -0.21 -4.63 9.39 -26.73 -0.25 -4.88 16 21 C -0.03 -0.39 7.32 -35.62 -0.26 -0.65 16 22 C -0.07 -0.75 10.14 36.01 0.36 -0.39 16 23 O -0.18 -2.64 10.65 5.72 0.06 -2.57 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.15 2.37 8.04 -52.49 -0.42 1.95 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.14 7.37 -51.93 -0.38 0.76 16 30 H 0.04 0.63 7.62 -51.92 -0.40 0.24 16 31 H 0.33 6.50 6.96 -39.29 -0.27 6.23 16 32 H -0.01 -0.12 7.73 -51.93 -0.40 -0.52 16 33 H 0.09 2.28 6.47 -51.93 -0.34 1.94 16 34 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 35 H 0.06 1.35 8.06 -51.93 -0.42 0.93 16 36 H 0.08 1.95 8.14 -51.93 -0.42 1.52 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.06 1.21 7.82 -51.93 -0.41 0.81 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 0.90 7.35 -51.93 -0.38 0.52 16 LS Contribution 338.79 15.07 5.11 5.11 Total: -1.00 -29.56 338.79 -8.26 -37.82 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -6.74 Total: 6.57 kcal Atomic # 6 Polarization: -23.18 SS G_CDS: -1.70 Total: -24.88 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: 0.04 Total: -38.47 kcal Atomic # 8 Polarization: -2.64 SS G_CDS: 0.06 Total: -2.57 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.56 -8.26 -37.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.747 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds