Wall clock time and date at job start Mon Mar 30 2020 00:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34514 * 125.78881 * 2 1 4 4 C 1.41381 * 106.83836 * 179.97438 * 3 2 1 5 5 C 1.50702 * 126.58176 * 179.97438 * 4 3 2 6 6 H 1.08996 * 109.47121 * 143.82813 * 5 4 3 7 7 C 1.52996 * 109.47240 * 263.83792 * 5 4 3 8 8 N 1.46902 * 109.46794 * 23.83485 * 5 4 3 9 9 C 1.46895 * 111.00083 * 157.69828 * 8 5 4 10 10 C 1.52992 * 109.47541 * 184.43148 * 9 8 5 11 11 C 1.50709 * 115.55190 * 276.60632 * 10 9 8 12 12 H 1.08003 * 119.99982 * 114.34687 * 11 10 9 13 13 C 1.37868 * 119.99946 * 294.34983 * 11 10 9 14 14 N 1.31515 * 120.00004 * 353.72423 * 13 11 10 15 15 Si 1.86799 * 120.00326 * 173.72220 * 13 11 10 16 16 H 1.48502 * 109.47188 * 89.99893 * 15 13 11 17 17 H 1.48495 * 109.47486 * 210.00045 * 15 13 11 18 18 H 1.48500 * 109.46976 * 330.00352 * 15 13 11 19 19 C 1.53007 * 117.50324 * 130.89462 * 10 9 8 20 20 C 1.53001 * 117.49813 * 62.27255 * 10 9 8 21 21 C 1.34517 * 106.84255 * 359.97438 * 4 3 2 22 22 C 1.50702 * 125.79285 * 180.02562 * 21 4 3 23 23 O 1.34295 * 125.78687 * 180.26526 * 2 1 3 24 24 H 1.09004 * 109.46951 * 89.99955 * 1 2 3 25 25 H 1.09002 * 109.47314 * 210.00357 * 1 2 3 26 26 H 1.09004 * 109.46844 * 330.00565 * 1 2 3 27 27 H 1.07996 * 126.57996 * 359.93747 * 3 2 1 28 28 H 1.08994 * 109.47350 * 59.99494 * 7 5 4 29 29 H 1.09002 * 109.47050 * 180.02562 * 7 5 4 30 30 H 1.09009 * 109.46666 * 299.99504 * 7 5 4 31 31 H 1.00903 * 111.00226 * 33.74199 * 8 5 4 32 32 H 1.08998 * 109.47416 * 304.43313 * 9 8 5 33 33 H 1.09004 * 109.46925 * 64.42992 * 9 8 5 34 34 H 0.96999 * 119.99998 * 185.00622 * 14 13 11 35 35 H 1.08998 * 117.49309 * 0.02562 * 19 10 9 36 36 H 1.08992 * 117.49913 * 145.02203 * 19 10 9 37 37 H 1.09003 * 117.50258 * 214.98308 * 20 10 9 38 38 H 1.08998 * 117.50119 * 359.97438 * 20 10 9 39 39 H 1.09001 * 109.47484 * 89.99520 * 22 21 4 40 40 H 1.08997 * 109.47155 * 209.99832 * 22 21 4 41 41 H 1.08998 * 109.46435 * 330.00036 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6320 0.0006 5 6 4.8733 1.4849 0.0003 6 1 5.6422 1.0070 0.6073 7 6 5.3818 1.6449 -1.4338 8 7 4.5599 2.8069 0.5590 9 6 5.7716 3.4656 1.0646 10 6 5.3917 4.7867 1.7360 11 6 5.2235 5.9625 0.8084 12 1 4.2522 6.4185 0.6851 13 6 6.3094 6.4561 0.1172 14 7 7.5127 5.9834 0.3585 15 14 6.0718 7.7964 -1.1621 16 1 6.1939 9.1268 -0.5139 17 1 7.1081 7.6629 -2.2173 18 1 4.7243 7.6649 -1.7723 19 6 5.9624 5.0612 3.1289 20 6 4.4804 4.7190 2.9632 21 6 3.5814 -0.7122 0.0015 22 6 4.7705 -1.6380 0.0030 23 8 2.2924 -1.0894 -0.0050 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8901 0.5138 27 1 1.9666 2.1204 -0.0009 28 1 4.6128 2.1228 -2.0407 29 1 6.2807 2.2614 -1.4340 30 1 5.6144 0.6639 -1.8484 31 1 3.8582 2.7373 1.2808 32 1 6.2619 2.8169 1.7905 33 1 6.4514 3.6617 0.2353 34 1 8.2852 6.3798 -0.0739 35 1 6.6089 4.3006 3.5666 36 1 6.2165 6.0922 3.3744 37 1 3.7594 5.5251 3.0998 38 1 4.1512 3.7333 3.2919 39 1 5.0567 -1.8604 1.0309 40 1 4.5109 -2.5638 -0.5104 41 1 5.6042 -1.1592 -0.5107 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249825.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:16 Heat of formation + Delta-G solvation = 10.638327 kcal Electronic energy + Delta-G solvation = -20107.407995 eV Core-core repulsion = 17181.621679 eV Total energy + Delta-G solvation = -2925.786316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.55880 -39.11780 -37.17093 -34.03277 -33.83941 -33.57217 -30.60894 -30.25226 -27.76323 -26.38581 -25.45388 -23.52542 -22.89019 -21.64684 -20.89881 -20.04250 -18.13885 -17.35572 -17.26825 -16.65322 -16.26187 -15.88424 -15.33331 -15.00485 -14.79374 -14.35636 -14.14619 -14.10216 -13.66066 -13.59216 -13.43804 -13.21141 -13.18677 -13.04118 -12.84225 -12.76525 -12.61197 -12.43192 -12.29203 -12.03739 -11.85066 -11.22955 -10.86230 -10.50584 -10.43823 -9.97484 -9.14857 -9.01609 -8.04615 -6.11908 0.78228 1.41530 1.44567 1.53979 1.64888 2.03996 2.46578 3.16975 3.27095 3.65825 3.77244 3.86847 4.12694 4.29926 4.36916 4.42680 4.50017 4.52002 4.58265 4.67118 4.70425 4.73983 4.75254 4.79537 4.84794 4.93168 4.95490 5.01388 5.11215 5.11771 5.20989 5.28177 5.34987 5.43357 5.59009 5.65807 5.71258 5.94735 6.24563 6.39514 6.47823 6.72514 6.89946 7.52590 9.03419 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.021857 B = 0.004980 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.754754 B = 5621.491188 C = 5649.546370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.027 4.027 3 C -0.209 4.209 4 C -0.185 4.185 5 C 0.158 3.842 6 H 0.041 0.959 7 C -0.126 4.126 8 N -0.672 5.672 9 C 0.125 3.875 10 C 0.030 3.970 11 C -0.490 4.490 12 H 0.046 0.954 13 C 0.027 3.973 14 N -0.909 5.909 15 Si 0.945 3.055 16 H -0.277 1.277 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.181 4.181 20 C -0.184 4.184 21 C -0.024 4.024 22 C -0.072 4.072 23 O -0.184 6.184 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.145 0.855 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.073 0.927 31 H 0.335 0.665 32 H -0.003 1.003 33 H 0.055 0.945 34 H 0.258 0.742 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 -15.094 -0.864 17.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.076 4.076 3 C -0.229 4.229 4 C -0.187 4.187 5 C 0.048 3.952 6 H 0.059 0.941 7 C -0.184 4.184 8 N -0.304 5.304 9 C -0.004 4.004 10 C 0.029 3.971 11 C -0.528 4.528 12 H 0.065 0.935 13 C -0.173 4.173 14 N -0.548 5.548 15 Si 0.771 3.229 16 H -0.203 1.203 17 H -0.211 1.211 18 H -0.198 1.198 19 C -0.220 4.220 20 C -0.221 4.221 21 C -0.074 4.074 22 C -0.128 4.128 23 O -0.082 6.082 24 H 0.110 0.890 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.163 0.837 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.015 0.985 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.955 -15.094 -1.596 17.623 hybrid contribution 0.546 0.900 0.256 1.083 sum -8.409 -14.194 -1.340 16.553 Atomic orbital electron populations 1.20428 0.82437 1.05038 1.04499 1.22985 0.95368 0.83368 1.05867 1.21541 0.92258 0.99955 1.09117 1.20291 0.95581 0.93448 1.09366 1.19754 0.91814 0.87292 0.96325 0.94079 1.21679 1.00177 1.01241 0.95274 1.60401 1.11468 1.19143 1.39409 1.21209 0.90472 0.92249 0.96461 1.18948 0.98157 0.93831 0.86168 1.20631 0.94270 1.13752 1.24156 0.93540 1.25543 0.95076 0.98626 0.98032 1.70062 0.98234 1.42094 1.44420 0.85762 0.77736 0.79778 0.79607 1.20313 1.21058 1.19755 1.22688 0.95129 0.99489 1.04673 1.22816 0.92579 1.00746 1.06001 1.22614 0.83939 0.94197 1.06641 1.20437 0.90309 0.97662 1.04384 1.83926 1.16456 1.35424 1.72418 0.89022 0.89475 0.88267 0.83732 0.93368 0.94045 0.90798 0.84590 0.98496 0.92648 0.93262 0.91121 0.91970 0.90375 0.89651 0.89217 0.88960 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.42 71.24 0.74 -0.36 16 2 C -0.03 -0.68 7.32 24.83 0.18 -0.50 16 3 C -0.21 -6.32 9.80 22.19 0.22 -6.10 16 4 C -0.19 -5.75 5.10 -19.94 -0.10 -5.85 16 5 C 0.16 5.42 2.60 44.17 0.11 5.53 16 6 H 0.04 1.39 7.68 -2.39 -0.02 1.37 16 7 C -0.13 -4.24 9.37 71.98 0.67 -3.56 16 8 N -0.67 -27.18 6.08 -495.48 -3.01 -30.19 16 9 C 0.13 5.83 5.36 86.30 0.46 6.29 16 10 C 0.03 1.47 1.50 -52.92 -0.08 1.40 16 11 C -0.49 -27.27 8.83 25.60 0.23 -27.05 16 12 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 13 C 0.03 1.49 5.26 84.65 0.44 1.93 16 14 N -0.91 -52.35 12.53 21.44 0.27 -52.08 16 15 Si 0.94 44.48 29.55 68.60 2.03 46.51 16 16 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 18 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 19 C -0.18 -8.54 9.88 30.60 0.30 -8.24 16 20 C -0.18 -7.87 9.39 30.60 0.29 -7.58 16 21 C -0.02 -0.64 7.32 24.83 0.18 -0.46 16 22 C -0.07 -1.35 10.14 71.24 0.72 -0.63 16 23 O -0.18 -5.02 10.65 -2.46 -0.03 -5.05 16 24 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.14 4.50 8.04 -2.91 -0.02 4.48 16 28 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.04 1.54 7.37 -2.39 -0.02 1.52 16 30 H 0.07 2.00 7.62 -2.38 -0.02 1.98 16 31 H 0.34 13.03 6.96 -89.69 -0.62 12.40 16 32 H 0.00 -0.13 7.73 -2.39 -0.02 -0.15 16 33 H 0.06 2.94 6.47 -2.39 -0.02 2.93 16 34 H 0.26 14.25 8.32 -92.71 -0.77 13.48 16 35 H 0.07 3.13 8.06 -2.39 -0.02 3.11 16 36 H 0.06 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.09 3.22 7.82 -2.39 -0.02 3.20 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.67 7.35 -2.39 -0.02 1.65 16 Total: -1.00 -63.33 338.79 4.01 -59.32 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: 0.38 Total: 26.68 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 4.38 Total: -45.19 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -2.74 Total: -82.27 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.03 Total: -5.05 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.33 4.01 -59.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249825.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.957 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds