Wall clock time and date at job start Mon Mar 30 2020 00:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34512 * 125.78920 * 2 1 4 4 C 1.41375 * 106.84067 * 180.02562 * 3 2 1 5 5 C 1.50702 * 126.57769 * 179.97438 * 4 3 2 6 6 H 1.09004 * 109.47130 * 218.35154 * 5 4 3 7 7 C 1.53005 * 109.46846 * 98.35492 * 5 4 3 8 8 N 1.46893 * 109.47362 * 338.35649 * 5 4 3 9 9 C 1.46901 * 110.99965 * 206.95752 * 8 5 4 10 10 C 1.53003 * 109.47229 * 184.00307 * 9 8 5 11 11 C 1.50695 * 115.55164 * 271.81433 * 10 9 8 12 12 H 1.08000 * 120.00457 * 114.25009 * 11 10 9 13 13 C 1.37885 * 119.99763 * 294.25763 * 11 10 9 14 14 N 1.31517 * 119.99646 * 344.86198 * 13 11 10 15 15 Si 1.86799 * 119.99916 * 164.85698 * 13 11 10 16 16 H 1.48501 * 109.47061 * 60.00547 * 15 13 11 17 17 H 1.48501 * 109.47037 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47511 * 300.00225 * 15 13 11 19 19 C 1.53005 * 117.50128 * 126.10159 * 10 9 8 20 20 C 1.53003 * 117.49813 * 57.47805 * 10 9 8 21 21 C 1.34509 * 106.84108 * 0.23184 * 4 3 2 22 22 C 1.50707 * 125.78911 * 179.77407 * 21 4 3 23 23 O 1.34300 * 125.78921 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46847 * 90.00079 * 1 2 3 25 25 H 1.08994 * 109.47284 * 209.99661 * 1 2 3 26 26 H 1.08999 * 109.47294 * 330.00108 * 1 2 3 27 27 H 1.08001 * 126.57723 * 359.97438 * 3 2 1 28 28 H 1.09005 * 109.46778 * 59.99903 * 7 5 4 29 29 H 1.09002 * 109.47070 * 179.97438 * 7 5 4 30 30 H 1.08998 * 109.47207 * 300.00161 * 7 5 4 31 31 H 1.00901 * 111.00408 * 82.99864 * 8 5 4 32 32 H 1.08993 * 109.47307 * 64.00265 * 9 8 5 33 33 H 1.09001 * 109.46834 * 303.99699 * 9 8 5 34 34 H 0.97000 * 119.99187 * 185.01188 * 14 13 11 35 35 H 1.08998 * 117.49469 * 0.02562 * 19 10 9 36 36 H 1.08996 * 117.49552 * 145.01756 * 19 10 9 37 37 H 1.08994 * 117.49905 * 214.97609 * 20 10 9 38 38 H 1.09001 * 117.49817 * 359.97438 * 20 10 9 39 39 H 1.08998 * 109.47396 * 89.99505 * 22 21 4 40 40 H 1.08999 * 109.47021 * 209.99376 * 22 21 4 41 41 H 1.08996 * 109.46629 * 329.99340 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6321 -0.0006 5 6 4.8732 1.4851 -0.0014 6 1 5.6286 1.0262 -0.6394 7 6 5.4129 1.6011 1.4256 8 7 4.5480 2.8234 -0.5122 9 6 5.7255 3.4540 -1.1236 10 6 5.3752 4.8801 -1.5529 11 6 4.8008 5.0190 -2.9392 12 1 3.7815 5.3507 -3.0707 13 6 5.5767 4.7223 -4.0398 14 7 6.8809 4.6096 -3.9137 15 14 4.7753 4.4804 -5.7097 16 1 4.0593 5.7216 -6.0996 17 1 5.8195 4.1738 -6.7201 18 1 3.8101 3.3542 -5.6372 19 6 6.2691 6.0117 -1.0415 20 6 4.8586 5.8356 -0.4753 21 6 3.5813 -0.7121 -0.0061 22 6 4.7706 -1.6378 -0.0136 23 8 2.2924 -1.0894 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5137 26 1 -0.3634 0.8900 0.5138 27 1 1.9665 2.1204 -0.0004 28 1 5.6542 0.6080 1.8046 29 1 6.3118 2.2178 1.4250 30 1 4.6576 2.0599 2.0636 31 1 4.1638 3.4054 0.2170 32 1 6.0348 2.8777 -1.9954 33 1 6.5396 3.4823 -0.3992 34 1 7.4340 4.4733 -4.6988 35 1 7.1070 5.7400 -0.3995 36 1 6.4420 6.8567 -1.7080 37 1 4.1037 6.5648 -0.7693 38 1 4.7679 5.4480 0.5394 39 1 5.0605 -1.8653 1.0122 40 1 4.5091 -2.5611 -0.5305 41 1 5.6023 -1.1565 -0.5280 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:19 Heat of formation + Delta-G solvation = 27.805114 kcal Electronic energy + Delta-G solvation = -20125.345978 eV Core-core repulsion = 17200.304071 eV Total energy + Delta-G solvation = -2925.041908 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31148 -37.48681 -35.62901 -32.76742 -32.35463 -31.88268 -29.43954 -29.02752 -25.73644 -24.76879 -24.13706 -22.46075 -21.09981 -20.39242 -19.22259 -18.58337 -16.39786 -16.03266 -15.91820 -14.66636 -14.57055 -14.31051 -14.06945 -13.40776 -13.30007 -13.27566 -13.11619 -12.78615 -12.61431 -12.56572 -12.30420 -12.09045 -11.72298 -11.57517 -11.34395 -11.04352 -10.81684 -10.79049 -10.67195 -10.41338 -10.17557 -9.33897 -9.13844 -8.95353 -8.40962 -8.04982 -7.87068 -7.49112 -5.96658 -3.95242 1.98396 2.96141 3.16701 3.36875 3.41381 3.47356 4.48233 4.74578 4.86707 5.08937 5.23939 5.27127 5.30493 5.45827 5.50499 5.51536 5.56122 5.58182 5.58620 5.70331 5.80625 5.93885 6.01439 6.15106 6.24863 6.27302 6.43049 6.49847 6.50374 6.58514 6.66791 6.75716 6.90676 6.96870 7.13102 7.46427 7.49401 7.65999 7.95583 8.02492 8.20829 8.56029 9.00692 9.65048 11.11539 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.017261 B = 0.005735 C = 0.005216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.805839 B = 4880.775983 C = 5366.303706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.039 4.039 3 C -0.171 4.171 4 C -0.142 4.142 5 C 0.150 3.850 6 H 0.080 0.920 7 C -0.173 4.173 8 N -0.668 5.668 9 C 0.110 3.890 10 C 0.058 3.942 11 C -0.482 4.482 12 H 0.058 0.942 13 C 0.072 3.928 14 N -0.880 5.880 15 Si 0.885 3.115 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.275 1.275 19 C -0.173 4.173 20 C -0.210 4.210 21 C -0.034 4.034 22 C -0.068 4.068 23 O -0.181 6.181 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.149 0.851 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.332 0.668 32 H 0.078 0.922 33 H 0.000 1.000 34 H 0.259 0.741 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.947 -9.966 9.860 15.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.088 4.088 3 C -0.190 4.190 4 C -0.144 4.144 5 C 0.039 3.961 6 H 0.098 0.902 7 C -0.232 4.232 8 N -0.298 5.298 9 C -0.018 4.018 10 C 0.057 3.943 11 C -0.520 4.520 12 H 0.076 0.924 13 C -0.131 4.131 14 N -0.517 5.517 15 Si 0.713 3.287 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.201 1.201 19 C -0.212 4.212 20 C -0.247 4.247 21 C -0.084 4.084 22 C -0.124 4.124 23 O -0.079 6.079 24 H 0.095 0.905 25 H 0.088 0.912 26 H 0.104 0.896 27 H 0.166 0.834 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.096 0.904 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.114 -10.592 9.141 15.269 hybrid contribution 0.269 0.384 -0.196 0.508 sum -5.845 -10.208 8.945 14.778 Atomic orbital electron populations 1.20198 0.85595 1.03345 1.03159 1.22275 0.93684 0.84326 1.08559 1.21390 0.91943 0.99328 1.06385 1.20190 0.95926 0.92321 1.05944 1.19800 0.91812 0.90809 0.93668 0.90229 1.22460 1.01133 1.01739 0.97917 1.60423 1.32415 1.01830 1.35094 1.21573 0.87696 0.96180 0.96386 1.18833 0.96955 0.86171 0.92332 1.20328 0.98145 1.45065 0.88444 0.92378 1.24921 0.94621 0.94902 0.98660 1.70014 1.03428 1.48674 1.29583 0.86768 0.79246 0.78899 0.83755 1.20442 1.21499 1.20050 1.22742 0.90967 1.04552 1.02918 1.22812 0.98075 1.06468 0.97374 1.21991 0.83167 0.94175 1.09069 1.20226 0.91810 0.97581 1.02808 1.83874 1.16207 1.35033 1.72782 0.90503 0.91248 0.89645 0.83357 0.92654 0.92408 0.92633 0.85003 0.90351 0.98203 0.93097 0.92256 0.90194 0.90588 0.92086 0.90717 0.91065 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.69 10.42 36.01 0.38 -0.31 16 2 C -0.04 -0.58 7.32 -35.62 -0.26 -0.84 16 3 C -0.17 -2.79 10.22 -39.71 -0.41 -3.19 16 4 C -0.14 -2.35 5.29 -104.75 -0.55 -2.90 16 5 C 0.15 2.51 2.75 -68.86 -0.19 2.32 16 6 H 0.08 1.38 7.10 -51.93 -0.37 1.01 16 7 C -0.17 -2.45 9.14 37.16 0.34 -2.11 16 8 N -0.67 -13.07 5.83 -107.95 -0.63 -13.70 16 9 C 0.11 2.49 5.47 -3.82 -0.02 2.47 16 10 C 0.06 1.42 1.52 -155.66 -0.24 1.19 16 11 C -0.48 -13.33 8.78 -34.44 -0.30 -13.63 16 12 H 0.06 1.63 7.86 -52.49 -0.41 1.22 16 13 C 0.07 1.99 5.11 -17.82 -0.09 1.90 16 14 N -0.88 -25.08 13.21 55.43 0.73 -24.35 16 15 Si 0.89 21.64 29.57 -169.99 -5.03 16.61 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.17 -4.07 9.88 -26.73 -0.26 -4.33 16 20 C -0.21 -4.53 9.37 -26.73 -0.25 -4.78 16 21 C -0.03 -0.52 7.32 -35.62 -0.26 -0.78 16 22 C -0.07 -0.77 10.21 36.01 0.37 -0.40 16 23 O -0.18 -2.83 10.65 5.72 0.06 -2.77 16 24 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.83 7.53 -51.93 -0.39 0.44 16 30 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 31 H 0.33 6.16 7.21 -39.29 -0.28 5.87 16 32 H 0.08 2.01 7.66 -51.93 -0.40 1.62 16 33 H 0.00 0.00 7.24 -51.93 -0.38 -0.38 16 34 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 35 H 0.06 1.31 8.04 -51.93 -0.42 0.89 16 36 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 37 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.06 1.17 7.53 -51.93 -0.39 0.78 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.95 7.32 -51.93 -0.38 0.57 16 LS Contribution 340.50 15.07 5.13 5.13 Total: -1.00 -29.97 340.50 -8.26 -38.24 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -6.78 Total: 6.25 kcal Atomic # 6 Polarization: -23.66 SS G_CDS: -1.75 Total: -25.41 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.10 Total: -38.05 kcal Atomic # 8 Polarization: -2.83 SS G_CDS: 0.06 Total: -2.77 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.97 -8.26 -38.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.044 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds