Wall clock time and date at job start Mon Mar 30 2020 00:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50707 * 109.46689 * 2 1 4 4 C 1.34515 * 125.78940 * 90.00274 * 3 2 1 5 5 C 1.41387 * 106.84001 * 179.97438 * 4 3 2 6 6 C 1.34518 * 106.83876 * 0.22309 * 5 4 3 7 7 C 1.50700 * 125.78463 * 179.76732 * 6 5 4 8 8 N 1.46903 * 109.46693 * 90.00936 * 7 6 5 9 9 C 1.46904 * 110.99755 * 189.99642 * 8 7 6 10 10 C 1.50704 * 109.46885 * 75.55501 * 9 8 7 11 11 H 1.08003 * 119.99943 * 356.64003 * 10 9 8 12 12 C 1.37879 * 119.99587 * 176.64591 * 10 9 8 13 13 N 1.31510 * 119.99693 * 179.97438 * 12 10 9 14 14 Si 1.86797 * 120.00320 * 359.97438 * 12 10 9 15 15 H 1.48496 * 109.47260 * 89.99684 * 14 12 10 16 16 H 1.48500 * 109.47007 * 209.99906 * 14 12 10 17 17 H 1.48504 * 109.47015 * 329.99635 * 14 12 10 18 18 C 1.46902 * 111.00111 * 66.04383 * 8 7 6 19 19 C 1.53005 * 109.46756 * 195.68850 * 18 8 7 20 20 C 1.53005 * 117.49670 * 244.11395 * 19 18 8 21 21 C 1.52999 * 117.49550 * 175.45558 * 19 18 8 22 22 O 1.34297 * 108.42169 * 359.63563 * 6 5 4 23 23 H 1.09000 * 109.46930 * 299.99860 * 1 2 3 24 24 H 1.08999 * 109.47061 * 59.99916 * 1 2 3 25 25 H 1.08996 * 109.46708 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47224 * 240.00355 * 2 1 3 27 27 H 1.08993 * 109.47507 * 119.99547 * 2 1 3 28 28 H 1.07996 * 126.57670 * 359.94138 * 4 3 2 29 29 H 1.07995 * 126.57950 * 179.97438 * 5 4 3 30 30 H 1.09003 * 109.46917 * 210.00321 * 7 6 5 31 31 H 1.08996 * 109.47538 * 330.01141 * 7 6 5 32 32 H 1.08998 * 109.46737 * 195.54857 * 9 8 7 33 33 H 1.08993 * 109.46912 * 315.55137 * 9 8 7 34 34 H 0.97002 * 120.00094 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.46769 * 315.68217 * 18 8 7 36 36 H 1.09000 * 109.47385 * 75.68811 * 18 8 7 37 37 H 1.08998 * 115.55549 * 29.78088 * 19 18 8 38 38 H 1.09008 * 117.49532 * 359.97438 * 20 19 18 39 39 H 1.08993 * 117.49782 * 145.02242 * 20 19 18 40 40 H 1.09006 * 117.49818 * 214.97749 * 21 19 18 41 41 H 1.09003 * 117.50315 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1626 1.0911 5 6 2.7407 3.4232 0.6320 6 6 2.7197 3.3781 -0.7122 7 6 3.1101 4.5014 -1.6379 8 7 4.5439 4.4078 -1.9437 9 6 5.0120 5.6102 -2.6460 10 6 5.1409 6.7468 -1.6647 11 1 4.8478 6.6067 -0.6346 12 6 5.6328 7.9653 -2.0820 13 7 5.7449 8.9572 -1.2258 14 14 6.1402 8.2073 -3.8634 15 1 4.9754 8.6886 -4.6488 16 1 7.2336 9.2096 -3.9349 17 1 6.6149 6.9161 -4.4227 18 6 4.8385 3.1963 -2.7206 19 6 6.3435 2.9224 -2.6871 20 6 7.1043 2.9945 -4.0126 21 6 6.8428 1.6384 -3.3526 22 8 2.2946 2.1613 -1.0894 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3632 -1.0276 -0.0005 26 1 1.8934 -0.5137 -0.8899 27 1 1.8934 -0.5137 0.8899 28 1 2.1847 1.8544 2.1204 29 1 3.0372 4.2627 1.2433 30 1 2.5360 4.4273 -2.5615 31 1 2.9030 5.4573 -1.1568 32 1 5.9824 5.4109 -3.1005 33 1 4.2956 5.8797 -3.4220 34 1 6.0906 9.8147 -1.5195 35 1 4.3054 2.3493 -2.2888 36 1 4.5181 3.3395 -3.7526 37 1 6.8628 3.2591 -1.7899 38 1 6.5325 3.2367 -4.9086 39 1 8.1242 3.3782 -3.9873 40 1 7.6908 1.1304 -2.8932 41 1 6.0991 0.9885 -3.8138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093091395.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:45:19 Heat of formation + Delta-G solvation = 18.491508 kcal Electronic energy + Delta-G solvation = -19969.763443 eV Core-core repulsion = 17044.317667 eV Total energy + Delta-G solvation = -2925.445776 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.52433 -39.37013 -37.09982 -35.09113 -34.61242 -33.72400 -31.08385 -29.88726 -27.59561 -25.63660 -23.85733 -23.20960 -22.76896 -22.42070 -21.11458 -20.92559 -18.97441 -17.69935 -17.38884 -16.75242 -16.40008 -16.07596 -15.52235 -15.26913 -15.14510 -15.00613 -14.41871 -14.10705 -13.91009 -13.71067 -13.55656 -13.39177 -13.21774 -12.98824 -12.60399 -12.41762 -12.37117 -12.29253 -12.15054 -11.84510 -11.80671 -11.53096 -11.16775 -10.81810 -10.78023 -10.70308 -9.27120 -9.06924 -8.26393 -6.29201 0.77146 1.34832 1.36950 1.47479 1.70384 1.96600 2.35476 2.88631 3.06477 3.22452 3.66382 3.90979 3.93221 4.03012 4.14306 4.18181 4.20145 4.40445 4.41242 4.44443 4.58441 4.60606 4.65378 4.75999 4.77474 4.88977 4.92390 4.95929 4.99530 5.03558 5.05618 5.23053 5.25022 5.25941 5.35554 5.37773 5.55980 5.68103 5.97090 6.22581 6.32102 6.61283 6.76497 7.33930 8.90237 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019149 B = 0.005555 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.831340 B = 5039.246583 C = 6078.761931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.019 4.019 4 C -0.217 4.217 5 C -0.206 4.206 6 C -0.013 4.013 7 C 0.145 3.855 8 N -0.534 5.534 9 C 0.175 3.825 10 C -0.512 4.512 11 H 0.038 0.962 12 C 0.011 3.989 13 N -0.948 5.948 14 Si 0.941 3.059 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.247 1.247 18 C 0.090 3.910 19 C -0.161 4.161 20 C -0.186 4.186 21 C -0.154 4.154 22 O -0.187 6.187 23 H 0.057 0.943 24 H 0.044 0.956 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.114 0.886 28 H 0.168 0.832 29 H 0.138 0.862 30 H 0.046 0.954 31 H 0.092 0.908 32 H 0.040 0.960 33 H -0.011 1.011 34 H 0.266 0.734 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.341 -19.729 -2.105 20.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.076 4.076 3 C -0.069 4.069 4 C -0.236 4.236 5 C -0.226 4.226 6 C -0.063 4.063 7 C 0.018 3.982 8 N -0.259 5.259 9 C 0.049 3.951 10 C -0.551 4.551 11 H 0.056 0.944 12 C -0.186 4.186 13 N -0.588 5.588 14 Si 0.764 3.236 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.170 1.170 18 C -0.038 4.038 19 C -0.180 4.180 20 C -0.223 4.223 21 C -0.191 4.191 22 O -0.085 6.085 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.132 0.868 28 H 0.185 0.815 29 H 0.156 0.844 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.006 0.994 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.049 0.951 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.126 0.874 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.071 -19.672 -1.955 20.680 hybrid contribution 0.005 1.286 -0.836 1.534 sum -6.066 -18.386 -2.791 19.561 Atomic orbital electron populations 1.21779 0.93222 1.03394 1.01977 1.20264 0.96843 0.85144 1.05334 1.23173 1.03782 0.96322 0.83600 1.21783 1.07541 0.93709 1.00536 1.21725 1.06544 1.00194 0.94126 1.22229 1.03813 0.85390 0.94875 1.20343 0.88716 0.93217 0.95971 1.61848 1.14250 1.02980 1.46790 1.19970 0.95258 0.87478 0.92444 1.21243 1.42008 0.95238 0.96579 0.94375 1.25772 0.95358 0.95404 1.02052 1.70046 1.48102 1.03703 1.36989 0.85810 0.78630 0.79073 0.80079 1.19278 1.20814 1.17027 1.21663 0.94575 0.92447 0.95116 1.22168 0.94920 1.03670 0.97229 1.23095 1.01543 1.01679 0.95982 1.23024 1.03391 0.89955 1.02742 1.83927 1.65992 1.22378 1.36196 0.92344 0.93642 0.89380 0.89507 0.86793 0.81476 0.84414 0.93593 0.88991 0.94208 0.99350 0.92498 0.90837 0.95089 0.89203 0.88949 0.88715 0.87433 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 71.98 0.71 -1.39 16 2 C -0.04 -0.65 6.47 29.85 0.19 -0.46 16 3 C -0.02 -0.50 6.58 24.84 0.16 -0.34 16 4 C -0.22 -6.13 10.81 22.19 0.24 -5.89 16 5 C -0.21 -7.23 10.81 22.19 0.24 -6.99 16 6 C -0.01 -0.48 5.93 24.83 0.15 -0.34 16 7 C 0.15 5.80 5.32 85.56 0.46 6.26 16 8 N -0.53 -22.91 4.37 -905.34 -3.96 -26.87 16 9 C 0.17 8.44 3.67 85.56 0.31 8.75 16 10 C -0.51 -29.70 9.15 25.60 0.23 -29.46 16 11 H 0.04 2.47 7.93 -2.91 -0.02 2.45 16 12 C 0.01 0.67 5.47 84.66 0.46 1.13 16 13 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 14 Si 0.94 43.98 27.54 68.60 1.89 45.87 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.25 -10.72 6.45 99.48 0.64 -10.08 16 18 C 0.09 3.20 5.11 86.30 0.44 3.64 16 19 C -0.16 -5.34 4.97 -10.79 -0.05 -5.40 16 20 C -0.19 -5.31 9.98 30.62 0.31 -5.00 16 21 C -0.15 -3.79 10.25 30.62 0.31 -3.48 16 22 O -0.19 -6.14 9.65 -2.47 -0.02 -6.16 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 27 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.17 3.70 8.06 -2.91 -0.02 3.67 16 29 H 0.14 5.00 8.06 -2.91 -0.02 4.97 16 30 H 0.05 1.71 8.12 -2.39 -0.02 1.69 16 31 H 0.09 4.06 7.33 -2.39 -0.02 4.05 16 32 H 0.04 1.91 5.76 -2.39 -0.01 1.90 16 33 H -0.01 -0.53 7.60 -2.39 -0.02 -0.55 16 34 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 35 H 0.07 2.55 6.15 -2.39 -0.01 2.53 16 36 H 0.03 1.07 7.79 -2.39 -0.02 1.05 16 37 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 38 H 0.09 2.56 8.03 -2.38 -0.02 2.54 16 39 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 40 H 0.11 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.10 2.25 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -67.56 337.00 3.29 -64.26 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: 0.92 Total: 20.99 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 4.17 Total: -38.97 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -3.66 Total: -86.00 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.02 Total: -6.16 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.89 Total: 45.87 kcal Total: -67.56 3.29 -64.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091395.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.756 kcal (2) G-P(sol) polarization free energy of solvation -67.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds