Wall clock time and date at job start Mon Mar 30 2020 00:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34518 * 125.78798 * 2 1 4 4 C 1.41386 * 106.83912 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.57673 * 179.97438 * 4 3 2 6 6 N 1.46892 * 109.47245 * 260.02545 * 5 4 3 7 7 C 1.46902 * 111.00128 * 190.00306 * 6 5 4 8 8 C 1.50695 * 109.47063 * 75.60703 * 7 6 5 9 9 H 1.07999 * 120.00282 * 355.56484 * 8 7 6 10 10 C 1.37879 * 120.00206 * 175.55451 * 8 7 6 11 11 N 1.31518 * 119.99665 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 120.00377 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47270 * 60.00198 * 12 10 8 14 14 H 1.48493 * 109.47342 * 180.02562 * 12 10 8 15 15 H 1.48507 * 109.47111 * 300.00502 * 12 10 8 16 16 C 1.46905 * 110.99757 * 66.04983 * 6 5 4 17 17 C 1.53005 * 109.46949 * 195.68912 * 16 6 5 18 18 C 1.53005 * 117.49497 * 244.12077 * 17 16 6 19 19 C 1.53001 * 117.49906 * 175.46568 * 17 16 6 20 20 C 1.34518 * 106.83890 * 0.02562 * 4 3 2 21 21 C 1.50697 * 125.78718 * 179.97438 * 20 4 3 22 22 O 1.34298 * 125.79024 * 179.69777 * 2 1 3 23 23 H 1.09003 * 109.47205 * 89.99580 * 1 2 3 24 24 H 1.09001 * 109.46971 * 329.99950 * 1 2 3 25 25 H 1.08997 * 109.47362 * 209.99880 * 1 2 3 26 26 H 1.07996 * 126.57822 * 0.03974 * 3 2 1 27 27 H 1.08999 * 109.47077 * 20.02970 * 5 4 3 28 28 H 1.09004 * 109.46494 * 140.02705 * 5 4 3 29 29 H 1.08999 * 109.47011 * 195.61251 * 7 6 5 30 30 H 1.09000 * 109.47093 * 315.60805 * 7 6 5 31 31 H 0.97000 * 119.99834 * 179.97438 * 11 10 8 32 32 H 1.08993 * 109.47263 * 315.68693 * 16 6 5 33 33 H 1.09003 * 109.46909 * 75.68964 * 16 6 5 34 34 H 1.08993 * 115.55390 * 29.78930 * 17 16 6 35 35 H 1.09002 * 117.49927 * 0.02562 * 18 17 16 36 36 H 1.09001 * 117.49774 * 145.01876 * 18 17 16 37 37 H 1.08994 * 117.49657 * 214.98027 * 19 17 16 38 38 H 1.09007 * 117.49485 * 359.97438 * 19 17 16 39 39 H 1.08999 * 109.47324 * 89.99702 * 21 20 4 40 40 H 1.08991 * 109.47184 * 209.99794 * 21 20 4 41 41 H 1.09000 * 109.47140 * 329.99769 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6321 0.0006 5 6 4.8732 1.4851 0.0003 6 7 5.4130 1.5636 -1.3636 7 6 6.7447 2.1837 -1.3679 8 6 7.7615 1.1935 -0.8613 9 1 7.4410 0.2281 -0.4985 10 6 9.1011 1.5199 -0.8612 11 7 9.4914 2.6957 -1.3027 12 14 10.3615 0.2924 -0.2339 13 1 10.2944 -0.9467 -1.0497 14 1 11.7207 0.8812 -0.3384 15 1 10.0715 -0.0334 1.1857 16 6 4.4932 2.2855 -2.2530 17 6 4.8772 2.0178 -3.7097 18 6 5.3516 3.2084 -4.5454 19 6 3.9707 2.5979 -4.7972 20 6 3.5814 -0.7122 0.0004 21 6 4.7706 -1.6378 0.0003 22 8 2.2924 -1.0894 0.0057 23 1 -0.3634 0.0001 -1.0277 24 1 -0.3633 0.8900 0.5138 25 1 -0.3634 -0.8900 0.5138 26 1 1.9665 2.1204 0.0006 27 1 4.6262 2.4869 0.3515 28 1 5.6184 1.0419 0.6610 29 1 7.0031 2.4823 -2.3839 30 1 6.7389 3.0614 -0.7216 31 1 10.4338 2.9255 -1.3023 32 1 3.4737 1.9426 -2.0771 33 1 4.5569 3.3547 -2.0510 34 1 5.3402 1.0504 -3.9037 35 1 5.3906 4.1822 -4.0573 36 1 6.1266 3.0241 -5.2894 37 1 3.8377 2.0122 -5.7068 38 1 3.1006 3.1699 -4.4749 39 1 5.0573 -1.8612 1.0279 40 1 4.5106 -2.5632 -0.5137 41 1 5.6039 -1.1587 -0.5135 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093091480.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:56 Heat of formation + Delta-G solvation = 31.439763 kcal Electronic energy + Delta-G solvation = -20248.314235 eV Core-core repulsion = 17323.429937 eV Total energy + Delta-G solvation = -2924.884298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.25448 -37.75118 -35.61389 -33.10990 -32.68852 -32.07893 -29.32098 -27.54098 -27.00309 -24.24783 -23.51704 -21.93914 -21.27318 -20.78780 -19.69251 -18.55683 -16.38214 -16.01494 -15.98066 -15.32962 -14.61561 -14.32598 -13.92557 -13.78679 -13.45649 -13.16898 -13.10339 -12.67282 -12.40508 -12.31845 -12.12720 -11.95761 -11.90728 -11.46622 -11.14361 -11.07269 -10.83626 -10.64475 -10.58233 -10.53434 -9.97976 -9.79540 -9.34644 -9.30999 -9.01464 -8.37808 -7.77284 -7.18946 -5.98046 -3.99055 2.05960 2.94962 3.24831 3.34880 3.39454 3.41561 4.28466 4.45738 4.87845 4.99477 5.20117 5.30696 5.33209 5.37590 5.41556 5.43053 5.45714 5.64019 5.69642 5.79335 5.91935 5.95246 5.97700 6.05142 6.18387 6.21147 6.30660 6.32390 6.38690 6.49804 6.51764 6.60767 6.69374 6.86419 6.98218 7.32849 7.42544 7.59167 7.86413 8.18268 8.28811 8.60454 9.07880 9.64497 11.12406 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.015479 B = 0.006631 C = 0.005045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.467232 B = 4221.272415 C = 5548.277703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.036 4.036 3 C -0.200 4.200 4 C -0.160 4.160 5 C 0.130 3.870 6 N -0.527 5.527 7 C 0.192 3.808 8 C -0.503 4.503 9 H 0.061 0.939 10 C 0.056 3.944 11 N -0.899 5.899 12 Si 0.894 3.106 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.278 1.278 16 C 0.087 3.913 17 C -0.125 4.125 18 C -0.179 4.179 19 C -0.191 4.191 20 C 0.004 3.996 21 C -0.074 4.074 22 O -0.182 6.182 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.139 0.861 27 H 0.026 0.974 28 H 0.089 0.911 29 H 0.040 0.960 30 H -0.014 1.014 31 H 0.260 0.740 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.662 -3.435 0.053 15.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.086 4.086 3 C -0.220 4.220 4 C -0.162 4.162 5 C 0.002 3.998 6 N -0.251 5.251 7 C 0.067 3.933 8 C -0.541 4.541 9 H 0.080 0.920 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.722 3.278 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.203 1.203 16 C -0.041 4.041 17 C -0.144 4.144 18 C -0.216 4.216 19 C -0.228 4.228 20 C -0.046 4.046 21 C -0.131 4.131 22 O -0.080 6.080 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.157 0.843 27 H 0.044 0.956 28 H 0.107 0.893 29 H 0.058 0.942 30 H 0.004 0.996 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -14.527 -4.083 -0.144 15.090 hybrid contribution 0.746 0.561 0.544 1.081 sum -13.780 -3.522 0.400 14.229 Atomic orbital electron populations 1.20188 0.85784 1.03374 1.02967 1.22147 0.93558 0.84445 1.08411 1.21437 0.92702 0.98840 1.09020 1.20283 0.95201 0.93393 1.07315 1.20305 0.91675 0.95545 0.92241 1.62094 1.03651 1.53100 1.06291 1.19779 0.82954 0.93021 0.97556 1.21122 0.90676 1.01273 1.41071 0.92035 1.24965 0.98478 0.95341 0.95742 1.69950 1.16026 1.20633 1.47228 0.86629 0.80420 0.81425 0.79324 1.20212 1.21477 1.20334 1.21579 0.96515 0.95122 0.90932 1.22241 1.02074 0.98324 0.91764 1.22966 0.96651 0.98175 1.03770 1.22930 0.94210 1.04951 1.00726 1.22251 0.82431 0.94563 1.05346 1.20394 0.92411 0.97293 1.02962 1.83901 1.16751 1.34931 1.72419 0.90641 0.89880 0.91094 0.84334 0.95586 0.89314 0.94166 0.99626 0.92990 0.91580 0.96139 0.87204 0.89306 0.89222 0.89458 0.89614 0.90882 0.91520 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.42 36.01 0.38 -0.27 16 2 C -0.04 -0.52 7.32 -35.62 -0.26 -0.78 16 3 C -0.20 -3.12 9.74 -39.70 -0.39 -3.51 16 4 C -0.16 -2.84 4.76 -104.74 -0.50 -3.34 16 5 C 0.13 2.57 4.80 -4.98 -0.02 2.55 16 6 N -0.53 -11.26 4.37 -237.52 -1.04 -12.30 16 7 C 0.19 4.90 4.59 -4.98 -0.02 4.88 16 8 C -0.50 -13.70 8.61 -34.44 -0.30 -14.00 16 9 H 0.06 1.63 7.29 -52.49 -0.38 1.25 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 11 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 12 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 16 C 0.09 1.65 5.11 -3.82 -0.02 1.63 16 17 C -0.13 -2.25 4.97 -90.61 -0.45 -2.70 16 18 C -0.18 -2.98 9.97 -26.69 -0.27 -3.24 16 19 C -0.19 -2.80 10.25 -26.69 -0.27 -3.08 16 20 C 0.00 0.07 7.32 -35.62 -0.26 -0.19 16 21 C -0.07 -1.14 10.20 36.00 0.37 -0.77 16 22 O -0.18 -2.99 10.65 5.73 0.06 -2.93 16 23 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.14 1.92 8.06 -52.49 -0.42 1.50 16 27 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 28 H 0.09 1.86 7.31 -51.93 -0.38 1.48 16 29 H 0.04 1.10 6.94 -51.93 -0.36 0.74 16 30 H -0.01 -0.39 8.00 -51.93 -0.42 -0.80 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 32 H 0.07 1.19 6.10 -51.93 -0.32 0.88 16 33 H 0.02 0.40 7.79 -51.93 -0.40 -0.01 16 34 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 35 H 0.09 1.49 8.03 -51.93 -0.42 1.07 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 37 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.11 1.92 7.50 -51.93 -0.39 1.53 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -29.82 339.43 -9.11 -38.94 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -6.85 Total: 1.93 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.11 Total: -21.36 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.30 Total: -38.00 kcal Atomic # 8 Polarization: -2.99 SS G_CDS: 0.06 Total: -2.93 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.82 -9.11 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093091480.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.377 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds