Wall clock time and date at job start Mon Mar 30 2020 00:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38289 * 119.97657 * 2 1 4 4 C 1.38239 * 120.11754 * 180.02562 * 3 2 1 5 5 C 1.38172 * 120.05431 * 359.67919 * 4 3 2 6 6 C 1.38714 * 119.94173 * 0.57628 * 5 4 3 7 7 O 1.35902 * 120.05750 * 179.72336 * 6 5 4 8 8 C 1.42902 * 116.99629 * 359.72155 * 7 6 5 9 9 C 1.52999 * 109.46749 * 180.02562 * 8 7 6 10 10 N 1.46894 * 109.47256 * 66.71803 * 9 8 7 11 11 C 1.46901 * 111.00144 * 283.56418 * 10 9 8 12 12 C 1.46901 * 111.00108 * 159.60756 * 10 9 8 13 13 H 1.08997 * 109.47444 * 60.00229 * 12 10 9 14 14 C 1.52997 * 109.47135 * 299.99907 * 12 10 9 15 15 C 1.50706 * 109.47206 * 180.02562 * 12 10 9 16 16 H 1.08004 * 119.99703 * 359.97438 * 15 12 10 17 17 C 1.37875 * 120.00168 * 180.02562 * 15 12 10 18 18 N 1.31517 * 119.99716 * 359.97438 * 17 15 12 19 19 Si 1.86791 * 120.00131 * 180.02562 * 17 15 12 20 20 H 1.48504 * 109.47362 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47426 * 119.99672 * 19 17 15 22 22 H 1.48497 * 109.47185 * 239.99696 * 19 17 15 23 23 C 1.38125 * 119.97472 * 179.97438 * 2 1 3 24 24 H 1.08993 * 109.47443 * 270.02203 * 1 2 3 25 25 H 1.08998 * 109.46939 * 30.02630 * 1 2 3 26 26 H 1.09001 * 109.47383 * 150.01934 * 1 2 3 27 27 H 1.08002 * 119.93816 * 359.97438 * 3 2 1 28 28 H 1.07998 * 119.97567 * 179.97438 * 4 3 2 29 29 H 1.07998 * 120.02937 * 180.29672 * 5 4 3 30 30 H 1.08999 * 109.47099 * 60.00381 * 8 7 6 31 31 H 1.09000 * 109.47074 * 300.00338 * 8 7 6 32 32 H 1.09004 * 109.47406 * 306.71919 * 9 8 7 33 33 H 1.08999 * 109.46980 * 186.71659 * 9 8 7 34 34 H 1.08993 * 109.47260 * 66.86589 * 11 10 9 35 35 H 1.09000 * 109.47354 * 186.86640 * 11 10 9 36 36 H 1.08996 * 109.47164 * 306.86305 * 11 10 9 37 37 H 1.09000 * 109.47065 * 59.99991 * 14 12 10 38 38 H 1.08998 * 109.47406 * 179.97438 * 14 12 10 39 39 H 1.08999 * 109.47222 * 299.99911 * 14 12 10 40 40 H 0.96997 * 119.99712 * 180.02562 * 18 17 15 41 41 H 1.08005 * 120.02143 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 0.0056 6 6 3.5846 -1.1959 0.0003 7 8 4.2658 -2.3719 0.0006 8 6 5.6927 -2.2950 0.0005 9 6 6.2795 -3.7079 0.0003 10 7 5.9617 -4.3700 -1.2719 11 6 4.5614 -4.8132 -1.2993 12 6 6.8744 -5.4933 -1.5233 13 1 6.7841 -6.2221 -0.7179 14 6 8.3134 -4.9771 -1.5850 15 6 6.5187 -6.1459 -2.8343 16 1 5.6965 -5.7646 -3.4218 17 6 7.2422 -7.2303 -3.2833 18 7 8.2430 -7.6949 -2.5676 19 14 6.8018 -8.0387 -4.9086 20 1 5.6457 -7.3317 -5.5160 21 1 7.9653 -7.9670 -5.8285 22 1 6.4437 -9.4605 -4.6732 23 6 2.1971 -1.1965 0.0005 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5142 26 1 -0.3634 -0.8902 -0.5135 27 1 1.6565 2.1324 -0.0004 28 1 4.1176 2.1382 -0.0010 29 1 5.3552 0.0102 0.0100 30 1 6.0279 -1.7621 0.8903 31 1 6.0278 -1.7626 -0.8897 32 1 5.8515 -4.2793 0.8240 33 1 7.3614 -3.6520 0.1204 34 1 3.9049 -3.9431 -1.3032 35 1 4.3851 -5.4053 -2.1973 36 1 4.3550 -5.4201 -0.4177 37 1 8.5709 -4.5048 -0.6370 38 1 8.9907 -5.8106 -1.7711 39 1 8.4037 -4.2483 -2.3904 40 1 8.7522 -8.4575 -2.8836 41 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097078902.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:44 Heat of formation + Delta-G solvation = -10.649409 kcal Electronic energy + Delta-G solvation = -19704.257340 eV Core-core repulsion = 16777.547918 eV Total energy + Delta-G solvation = -2926.709421 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.04951 -37.90244 -36.53744 -32.90904 -32.50889 -30.71747 -29.24360 -28.74028 -27.01017 -25.35738 -23.98781 -22.56977 -22.17567 -20.69267 -19.27747 -17.73846 -16.33562 -16.00014 -15.90883 -15.68169 -15.06645 -14.34970 -13.94242 -13.86510 -13.69163 -13.35846 -13.21250 -12.79479 -12.42733 -12.18639 -12.05955 -11.85962 -11.55066 -11.50720 -11.05909 -10.99942 -10.79940 -10.59950 -10.55816 -10.48876 -10.11941 -9.91578 -9.71453 -8.84451 -8.79190 -8.41540 -8.06575 -7.15514 -6.00647 -4.04433 1.31902 1.50182 3.30524 3.38326 3.43317 3.43698 3.77450 4.41714 4.76779 4.81217 4.94034 5.07507 5.17712 5.30936 5.31821 5.34623 5.46012 5.53092 5.58071 5.67357 5.69721 5.79660 6.03395 6.09670 6.23760 6.36924 6.43900 6.46734 6.55944 6.57577 6.81300 6.85311 6.98679 7.03931 7.17151 7.53141 7.63674 7.73665 7.84329 8.22329 8.34250 8.61540 9.02701 9.60487 11.06462 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030787 B = 0.003905 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.256838 B = 7167.669362 C = 7699.572179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.051 4.051 3 C -0.170 4.170 4 C -0.078 4.078 5 C -0.217 4.217 6 C 0.144 3.856 7 O -0.302 6.302 8 C 0.068 3.932 9 C 0.047 3.953 10 N -0.535 5.535 11 C 0.036 3.964 12 C 0.208 3.792 13 H -0.002 1.002 14 C -0.134 4.134 15 C -0.501 4.501 16 H 0.065 0.935 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.896 3.104 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.159 4.159 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.127 0.873 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.006 0.994 37 H 0.008 0.992 38 H 0.086 0.914 39 H 0.035 0.965 40 H 0.259 0.741 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 15.291 6.761 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.051 4.051 3 C -0.188 4.188 4 C -0.096 4.096 5 C -0.236 4.236 6 C 0.098 3.902 7 O -0.215 6.215 8 C -0.007 4.007 9 C -0.081 4.081 10 N -0.260 5.260 11 C -0.113 4.113 12 C 0.103 3.897 13 H 0.015 0.985 14 C -0.192 4.192 15 C -0.540 4.540 16 H 0.083 0.917 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.212 1.212 23 C -0.178 4.178 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.145 0.855 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.025 0.975 37 H 0.027 0.973 38 H 0.104 0.896 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.614 15.263 6.370 19.130 hybrid contribution 0.053 -0.908 -0.195 0.931 sum -9.561 14.355 6.174 18.319 Atomic orbital electron populations 1.20791 0.91027 1.02869 1.02329 1.19670 0.95855 0.92378 0.97203 1.20847 0.94146 0.97307 1.06494 1.20890 0.94135 0.97307 0.97250 1.21288 1.00415 0.92304 1.09616 1.19130 0.91870 0.85402 0.93844 1.86246 1.20950 1.26988 1.87347 1.23063 0.77355 0.99717 1.00614 1.22258 1.00364 0.92447 0.93078 1.62128 1.04017 1.31381 1.28441 1.22375 0.89543 0.98925 1.00426 1.19272 0.88586 0.85756 0.96127 0.98452 1.21887 0.99857 1.00936 0.96524 1.21202 1.15504 1.12484 1.04761 0.91734 1.24935 0.95073 0.96929 0.97388 1.69901 1.20235 1.25211 1.38055 0.86464 0.78387 0.79048 0.83666 1.19720 1.21038 1.21160 1.20317 0.91157 0.98510 1.07785 0.91105 0.91498 0.91328 0.86376 0.86131 0.85518 0.92689 0.91245 0.94854 0.88684 0.92204 0.90752 0.97527 0.97338 0.89572 0.94624 0.93073 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.01 36.00 0.36 -0.59 16 2 C -0.05 -0.58 5.88 -104.65 -0.62 -1.20 16 3 C -0.17 -1.84 9.70 -39.56 -0.38 -2.23 16 4 C -0.08 -0.88 10.04 -39.61 -0.40 -1.27 16 5 C -0.22 -2.82 9.04 -39.43 -0.36 -3.18 16 6 C 0.14 2.12 6.69 -39.22 -0.26 1.86 16 7 O -0.30 -4.96 7.44 -19.43 -0.14 -5.11 16 8 C 0.07 1.04 5.06 37.16 0.19 1.23 16 9 C 0.05 0.86 5.40 -3.83 -0.02 0.84 16 10 N -0.53 -11.77 4.55 -236.29 -1.07 -12.85 16 11 C 0.04 0.75 8.95 60.07 0.54 1.29 16 12 C 0.21 5.31 2.06 -68.86 -0.14 5.17 16 13 H 0.00 -0.06 8.14 -51.93 -0.42 -0.48 16 14 C -0.13 -3.24 8.81 37.16 0.33 -2.92 16 15 C -0.50 -13.86 7.79 -34.44 -0.27 -14.12 16 16 H 0.06 1.80 6.46 -52.48 -0.34 1.46 16 17 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 18 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 23 C -0.16 -2.14 9.64 -39.43 -0.38 -2.52 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 27 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.13 1.50 6.30 -52.49 -0.33 1.17 16 30 H 0.05 0.70 7.65 -51.93 -0.40 0.31 16 31 H 0.07 1.08 7.67 -51.93 -0.40 0.68 16 32 H 0.03 0.61 7.85 -51.93 -0.41 0.21 16 33 H 0.10 1.68 5.52 -51.93 -0.29 1.39 16 34 H 0.06 1.17 5.90 -51.93 -0.31 0.87 16 35 H 0.07 1.68 5.92 -51.93 -0.31 1.37 16 36 H 0.01 0.13 7.93 -51.93 -0.41 -0.28 16 37 H 0.01 0.17 6.03 -51.93 -0.31 -0.15 16 38 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 39 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -29.61 324.92 -8.55 -38.16 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.33 Total: -0.46 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: -1.51 Total: -16.13 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: -0.45 Total: -37.81 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.14 Total: -5.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.61 -8.55 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097078902.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.507 kcal (2) G-P(sol) polarization free energy of solvation -29.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds