Wall clock time and date at job start Mon Mar 30 2020 00:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 116.99903 * 2 1 4 4 C 1.38738 * 120.05515 * 89.99967 * 3 2 1 5 5 C 1.50697 * 120.03018 * 359.95414 * 4 3 2 6 6 C 1.38145 * 119.94371 * 179.97438 * 4 3 2 7 7 C 1.38267 * 120.05403 * 0.02562 * 6 4 3 8 8 C 1.50703 * 119.94399 * 179.97438 * 7 6 4 9 9 N 1.46899 * 109.47107 * 89.99914 * 8 7 6 10 10 C 1.46902 * 111.00255 * 293.95458 * 9 8 7 11 11 C 1.46901 * 111.00103 * 169.99758 * 9 8 7 12 12 C 1.50696 * 109.47399 * 190.00043 * 11 9 8 13 13 H 1.08005 * 119.99725 * 0.02562 * 12 11 9 14 14 C 1.37878 * 120.00189 * 180.02562 * 12 11 9 15 15 N 1.31512 * 119.99750 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 119.99818 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46963 * 90.00024 * 16 14 12 18 18 H 1.48502 * 109.47084 * 209.99996 * 16 14 12 19 19 H 1.48500 * 109.47321 * 330.00380 * 16 14 12 20 20 C 1.38270 * 120.11265 * 0.27221 * 7 6 4 21 21 C 1.38141 * 120.05541 * 359.45293 * 20 7 6 22 22 C 1.50694 * 120.03185 * 180.27409 * 21 20 7 23 23 H 1.08994 * 109.47216 * 60.00006 * 1 2 3 24 24 H 1.09004 * 109.47433 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47052 * 300.00245 * 1 2 3 26 26 H 1.08998 * 109.47188 * 270.02391 * 5 4 3 27 27 H 1.09004 * 109.47103 * 30.02525 * 5 4 3 28 28 H 1.08994 * 109.47182 * 150.02096 * 5 4 3 29 29 H 1.07997 * 119.97593 * 180.02562 * 6 4 3 30 30 H 1.09002 * 109.47152 * 330.00001 * 8 7 6 31 31 H 1.09001 * 109.46980 * 210.00101 * 8 7 6 32 32 H 1.09005 * 109.46528 * 59.99744 * 10 9 8 33 33 H 1.09000 * 109.46785 * 179.97438 * 10 9 8 34 34 H 1.08997 * 109.47044 * 300.00388 * 10 9 8 35 35 H 1.08998 * 109.47407 * 310.00536 * 11 9 8 36 36 H 1.09007 * 109.46608 * 69.99971 * 11 9 8 37 37 H 0.97008 * 119.99731 * 179.97438 * 15 14 12 38 38 H 1.07999 * 119.97019 * 179.70188 * 20 7 6 39 39 H 1.08996 * 109.47195 * 270.27234 * 22 21 20 40 40 H 1.09007 * 109.47189 * 30.27015 * 22 21 20 41 41 H 1.09000 * 109.47587 * 150.27060 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 2.3614 1.8300 1.2008 5 6 2.0192 1.1608 2.5070 6 6 2.9890 3.0606 1.1982 7 6 3.3023 3.6755 0.0000 8 6 3.9864 5.0183 0.0000 9 7 5.4428 4.8259 0.0000 10 6 5.8918 4.2049 1.2533 11 6 6.1416 6.0958 -0.2382 12 6 7.6053 5.8270 -0.4755 13 1 7.9790 4.8139 -0.4522 14 6 8.4675 6.8742 -0.7225 15 7 9.7447 6.6394 -0.9301 16 14 7.8210 8.6263 -0.7636 17 1 7.8943 9.2130 0.5987 18 1 8.6452 9.4362 -1.6964 19 1 6.4097 8.6225 -1.2256 20 6 2.9834 3.0634 -1.1981 21 6 2.3609 1.8302 -1.2008 22 6 2.0192 1.1607 -2.5069 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.0213 1.4663 2.8213 27 1 2.0443 0.0787 2.3784 28 1 2.7447 1.4533 3.2661 29 1 3.2351 3.5428 2.1326 30 1 3.6936 5.5754 0.8900 31 1 3.6935 5.5753 -0.8900 32 1 5.4108 3.2337 1.3702 33 1 6.9735 4.0735 1.2265 34 1 5.6240 4.8463 2.0929 35 1 5.7157 6.5864 -1.1135 36 1 6.0273 6.7422 0.6321 37 1 10.3512 7.3762 -1.1042 38 1 3.2249 3.5480 -2.1326 39 1 1.0214 1.4661 -2.8216 40 1 2.7450 1.4531 -3.2659 41 1 2.0442 0.0786 -2.3781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101566505.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:14 Heat of formation + Delta-G solvation = -15.826541 kcal Electronic energy + Delta-G solvation = -19829.633885 eV Core-core repulsion = 16902.699966 eV Total energy + Delta-G solvation = -2926.933918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.25817 -37.87986 -36.14783 -33.55886 -32.67284 -31.44435 -28.15091 -27.95168 -27.20233 -26.52420 -25.65868 -23.47645 -20.90907 -20.72740 -19.82944 -17.62536 -16.83024 -16.54713 -15.71254 -15.00825 -14.58721 -14.37883 -14.07646 -13.94097 -13.84051 -13.50529 -13.23926 -12.96904 -12.85475 -12.51752 -12.32537 -12.10079 -11.97839 -11.69119 -11.50138 -11.26721 -11.10482 -11.02891 -10.83936 -10.64771 -10.15397 -9.94041 -9.83215 -9.28415 -8.57832 -8.46394 -8.27678 -7.37549 -6.04559 -4.01880 1.28296 1.45567 3.27957 3.35675 3.37349 3.45778 3.96079 4.42035 4.80183 4.82780 4.91022 5.08031 5.09542 5.13785 5.28629 5.35534 5.37737 5.42613 5.51024 5.53107 5.57817 5.61839 5.72050 5.81231 5.90699 5.98372 6.08320 6.16731 6.23809 6.32110 6.50414 6.59769 6.70347 6.83045 6.85491 6.87288 6.99362 7.55342 7.59259 7.89507 8.03810 8.66254 9.04572 9.56855 11.08612 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.034355 B = 0.004119 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.833189 B = 6796.725447 C = 7075.741379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.333 6.333 3 C 0.079 3.921 4 C -0.102 4.102 5 C -0.109 4.109 6 C -0.108 4.108 7 C -0.057 4.057 8 C 0.087 3.913 9 N -0.524 5.524 10 C 0.033 3.967 11 C 0.161 3.839 12 C -0.508 4.508 13 H 0.081 0.919 14 C 0.068 3.932 15 N -0.900 5.900 16 Si 0.876 3.124 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.267 1.267 20 C -0.093 4.093 21 C -0.100 4.100 22 C -0.110 4.110 23 H 0.043 0.957 24 H 0.089 0.911 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.010 0.990 35 H 0.029 0.971 36 H -0.016 1.016 37 H 0.263 0.737 38 H 0.128 0.872 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.131 -9.988 2.953 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.250 6.250 3 C 0.035 3.965 4 C -0.102 4.102 5 C -0.166 4.166 6 C -0.127 4.127 7 C -0.058 4.058 8 C -0.041 4.041 9 N -0.248 5.248 10 C -0.115 4.115 11 C 0.035 3.965 12 C -0.547 4.547 13 H 0.099 0.901 14 C -0.134 4.134 15 N -0.539 5.539 16 Si 0.703 3.297 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.192 1.192 20 C -0.111 4.111 21 C -0.101 4.101 22 C -0.166 4.166 23 H 0.062 0.938 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.098 0.902 34 H 0.029 0.971 35 H 0.047 0.953 36 H 0.002 0.998 37 H 0.073 0.927 38 H 0.146 0.854 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.745 -10.375 2.522 22.447 hybrid contribution -0.476 1.780 0.644 1.951 sum -20.221 -8.595 3.166 22.199 Atomic orbital electron populations 1.22925 0.79762 1.02679 1.00473 1.85973 1.19276 1.25432 1.94339 1.18252 0.99928 0.86666 0.91621 1.20059 1.00523 0.94845 0.94821 1.20663 1.01276 1.00888 0.93745 1.20835 0.99371 0.94505 0.97942 1.19917 0.96256 0.96880 0.92720 1.21095 0.90078 0.92062 1.00895 1.61977 1.01159 1.27398 1.34226 1.22326 1.02535 0.97424 0.89209 1.20221 0.95547 0.85813 0.94879 1.21033 0.89739 0.95915 1.47980 0.90090 1.24899 0.94744 0.98777 0.94934 1.69897 1.02990 1.31964 1.49081 0.86860 0.79337 0.85343 0.78170 1.20376 1.21135 1.19201 1.20835 0.98007 0.94040 0.98229 1.20118 1.00332 0.94801 0.94834 1.20674 1.01355 1.00812 0.93808 0.93785 0.89206 0.93852 0.91816 0.91093 0.91477 0.86017 0.94915 0.90434 0.92941 0.90172 0.97124 0.95348 0.99830 0.92666 0.85443 0.91798 0.91226 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 11.13 101.05 1.12 1.44 16 2 O -0.33 -4.13 8.51 -19.41 -0.17 -4.29 16 3 C 0.08 1.08 5.67 -39.21 -0.22 0.86 16 4 C -0.10 -1.37 5.89 -104.47 -0.62 -1.98 16 5 C -0.11 -1.16 9.79 36.00 0.35 -0.81 16 6 C -0.11 -1.54 7.61 -39.60 -0.30 -1.84 16 7 C -0.06 -0.89 4.88 -104.60 -0.51 -1.41 16 8 C 0.09 1.50 5.12 -4.98 -0.03 1.48 16 9 N -0.52 -11.16 4.74 -245.82 -1.17 -12.33 16 10 C 0.03 0.66 8.95 60.07 0.54 1.20 16 11 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 12 C -0.51 -14.57 9.01 -34.44 -0.31 -14.88 16 13 H 0.08 2.54 7.37 -52.48 -0.39 2.15 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 16 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 20 C -0.09 -1.38 9.35 -39.60 -0.37 -1.75 16 21 C -0.10 -1.38 5.89 -104.48 -0.62 -2.00 16 22 C -0.11 -1.22 9.79 36.00 0.35 -0.87 16 23 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.75 7.53 -51.93 -0.39 0.36 16 28 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 29 H 0.12 1.61 8.03 -52.49 -0.42 1.19 16 30 H 0.03 0.54 8.06 -51.93 -0.42 0.12 16 31 H 0.08 1.29 7.87 -51.93 -0.41 0.88 16 32 H 0.05 0.94 6.16 -51.93 -0.32 0.62 16 33 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 34 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.03 0.70 6.99 -51.93 -0.36 0.33 16 36 H -0.02 -0.39 7.55 -51.93 -0.39 -0.78 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 38 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 41 H 0.07 0.77 7.53 -51.93 -0.39 0.38 16 LS Contribution 333.04 15.07 5.02 5.02 Total: -1.00 -31.51 333.04 -7.74 -39.24 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.81 Total: -2.79 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -0.72 Total: -14.75 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: -0.39 Total: -39.28 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.17 Total: -4.29 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.51 -7.74 -39.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101566505.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.418 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds