Wall clock time and date at job start Mon Mar 30 2020 00:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 116.99816 * 2 1 4 4 C 1.38751 * 120.05789 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.94804 * 180.02562 * 4 3 2 6 6 C 1.38287 * 120.05449 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94457 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.47109 * 90.00048 * 7 6 5 9 9 C 1.46901 * 110.99639 * 293.95446 * 8 7 6 10 10 C 1.46898 * 110.99746 * 169.99823 * 8 7 6 11 11 H 1.08988 * 109.47508 * 309.99614 * 10 8 7 12 12 C 1.53002 * 109.47279 * 70.00341 * 10 8 7 13 13 C 1.50703 * 109.46662 * 189.99888 * 10 8 7 14 14 H 1.08001 * 120.00214 * 359.97438 * 13 10 8 15 15 C 1.37876 * 119.99794 * 180.02562 * 13 10 8 16 16 N 1.31508 * 120.00244 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 120.00179 * 179.97438 * 15 13 10 18 18 H 1.48501 * 109.46975 * 60.00003 * 17 15 13 19 19 H 1.48499 * 109.47519 * 179.97438 * 17 15 13 20 20 H 1.48507 * 109.47111 * 300.00288 * 17 15 13 21 21 C 1.38243 * 120.11190 * 0.24788 * 6 5 4 22 22 C 1.38176 * 120.05502 * 359.45578 * 21 6 5 23 23 C 1.50691 * 120.02727 * 180.24725 * 22 21 6 24 24 H 1.08996 * 109.47267 * 59.99678 * 1 2 3 25 25 H 1.08994 * 109.47012 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47000 * 299.99568 * 1 2 3 27 27 H 1.07999 * 120.02472 * 359.97438 * 4 3 2 28 28 H 1.08004 * 119.97738 * 179.97438 * 5 4 3 29 29 H 1.08992 * 109.46894 * 329.99784 * 7 6 5 30 30 H 1.09004 * 109.47113 * 209.99934 * 7 6 5 31 31 H 1.08998 * 109.47452 * 60.00398 * 9 8 7 32 32 H 1.09000 * 109.46497 * 180.02562 * 9 8 7 33 33 H 1.09001 * 109.46901 * 299.99804 * 9 8 7 34 34 H 1.09000 * 109.46787 * 300.00060 * 12 10 8 35 35 H 1.09000 * 109.47057 * 59.99376 * 12 10 8 36 36 H 1.08996 * 109.47026 * 179.97438 * 12 10 8 37 37 H 0.97004 * 120.00869 * 180.02562 * 16 15 13 38 38 H 1.08000 * 119.97826 * 179.70457 * 21 6 5 39 39 H 1.08993 * 109.47504 * 270.31752 * 23 22 21 40 40 H 1.09000 * 109.47320 * 30.32340 * 23 22 21 41 41 H 1.09010 * 109.46996 * 150.31573 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3018 3.6759 -0.0016 7 6 3.9859 5.0187 -0.0028 8 7 4.2098 5.4554 1.3819 9 6 2.9352 5.7131 2.0652 10 6 5.0798 6.6382 1.4266 11 1 5.9696 6.4578 0.8236 12 6 4.3247 7.8480 0.8725 13 6 5.4858 6.9094 2.8524 14 1 5.1324 6.2676 3.6459 15 6 6.3074 7.9775 3.1439 16 7 6.7372 8.7594 2.1778 17 14 6.8101 8.3142 4.9112 18 1 7.5432 7.1403 5.4495 19 1 7.6896 9.5098 4.9565 20 1 5.5974 8.5597 5.7326 21 6 4.0559 2.5172 -0.0079 22 6 3.4311 1.2848 -0.0011 23 6 4.2537 0.0223 -0.0023 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.2128 2.3203 0.0005 28 1 1.3339 4.5115 0.0000 29 1 3.3573 5.7462 -0.5161 30 1 4.9433 4.9382 -0.5177 31 1 2.3391 4.8006 2.0786 32 1 3.1300 6.0353 3.0881 33 1 2.3908 6.4950 1.5357 34 1 4.0310 7.6517 -0.1587 35 1 3.4348 8.0283 1.4756 36 1 4.9701 8.7257 0.9061 37 1 7.3156 9.5107 2.3827 38 1 5.1343 2.5753 -0.0139 39 1 4.4512 -0.2818 -1.0302 40 1 5.1981 0.2035 0.5108 41 1 3.7068 -0.7682 0.5118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103144446.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:46 Heat of formation + Delta-G solvation = -11.374702 kcal Electronic energy + Delta-G solvation = -19930.802210 eV Core-core repulsion = 17004.061338 eV Total energy + Delta-G solvation = -2926.740872 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.17079 -38.04164 -36.51601 -33.17130 -32.37089 -30.69306 -28.46098 -27.72771 -26.68013 -26.12780 -25.18130 -23.36974 -21.73859 -20.45391 -19.06191 -17.88470 -16.30068 -16.16670 -15.79718 -15.23803 -14.73257 -14.33621 -14.13234 -13.94569 -13.42760 -13.35215 -13.04428 -12.89043 -12.53003 -12.07937 -11.98462 -11.96084 -11.54732 -11.22541 -11.10095 -10.95377 -10.81983 -10.74989 -10.57286 -10.54273 -10.38782 -10.01004 -9.76973 -8.89052 -8.58358 -8.35578 -7.85011 -7.08903 -5.98109 -4.01580 1.53474 1.63431 3.29815 3.34766 3.38738 3.42156 3.91188 4.44978 4.84705 4.91933 5.02629 5.04255 5.13856 5.30785 5.32089 5.35560 5.51249 5.54204 5.71838 5.76169 5.78138 5.93434 6.10343 6.17892 6.31626 6.36550 6.44106 6.51096 6.59401 6.69752 6.84321 6.91589 6.97797 6.99180 7.14948 7.47953 7.49314 7.73774 7.87246 8.16572 8.41568 8.62829 9.04387 9.63272 11.08925 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.031924 B = 0.004149 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.864321 B = 6747.586415 C = 6916.314009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.111 3.889 4 C -0.206 4.206 5 C -0.082 4.082 6 C -0.089 4.089 7 C 0.092 3.908 8 N -0.528 5.528 9 C 0.033 3.967 10 C 0.210 3.790 11 H 0.039 0.961 12 C -0.172 4.172 13 C -0.497 4.497 14 H 0.062 0.938 15 C 0.058 3.942 16 N -0.896 5.896 17 Si 0.896 3.104 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 C -0.064 4.064 22 C -0.119 4.119 23 C -0.102 4.102 24 H 0.052 0.948 25 H 0.095 0.905 26 H 0.053 0.947 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.015 0.985 34 H 0.006 0.994 35 H 0.031 0.969 36 H 0.088 0.912 37 H 0.260 0.740 38 H 0.130 0.870 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 -13.822 -5.994 18.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.067 3.933 4 C -0.224 4.224 5 C -0.100 4.100 6 C -0.090 4.090 7 C -0.036 4.036 8 N -0.251 5.251 9 C -0.115 4.115 10 C 0.104 3.896 11 H 0.056 0.944 12 C -0.231 4.231 13 C -0.536 4.536 14 H 0.080 0.920 15 C -0.143 4.143 16 N -0.536 5.536 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.082 4.082 22 C -0.120 4.120 23 C -0.158 4.158 24 H 0.071 0.929 25 H 0.113 0.887 26 H 0.072 0.928 27 H 0.140 0.860 28 H 0.137 0.863 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.033 0.967 34 H 0.025 0.975 35 H 0.050 0.950 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.165 -14.222 -5.764 18.407 hybrid contribution -0.511 1.216 0.533 1.423 sum -10.676 -13.006 -5.231 17.621 Atomic orbital electron populations 1.22980 0.79027 1.03405 1.01207 1.86024 1.20789 1.27224 1.89199 1.18758 0.91787 0.83879 0.98903 1.21086 0.99442 0.92356 1.09544 1.20831 0.94262 0.96688 0.98255 1.19898 0.93102 0.95734 1.00271 1.20984 0.98922 0.91220 0.92470 1.62371 1.13894 1.37394 1.11464 1.22271 0.91168 0.97926 1.00160 1.19332 0.90331 0.82832 0.97089 0.94356 1.22407 1.00537 1.04686 0.95494 1.21075 1.28885 1.11216 0.92403 0.92032 1.24918 0.96099 0.96052 0.97224 1.69871 1.34900 1.17359 1.31437 0.86588 0.78425 0.77554 0.84983 1.20231 1.21432 1.20408 1.20807 1.00012 0.90215 0.97208 1.19220 0.90446 0.96108 1.06181 1.20568 0.98901 0.94534 1.01843 0.92944 0.88656 0.92850 0.86020 0.86280 0.94943 0.90758 0.93646 0.91030 0.96681 0.97500 0.95033 0.89359 0.92992 0.85229 0.91807 0.91602 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.98 9.54 -19.44 -0.19 -4.17 16 3 C 0.11 1.56 6.66 -39.22 -0.26 1.30 16 4 C -0.21 -2.76 9.04 -39.44 -0.36 -3.12 16 5 C -0.08 -1.21 7.96 -39.61 -0.32 -1.53 16 6 C -0.09 -1.46 4.88 -104.60 -0.51 -1.97 16 7 C 0.09 1.70 4.69 -4.97 -0.02 1.68 16 8 N -0.53 -11.44 4.69 -237.73 -1.12 -12.56 16 9 C 0.03 0.67 8.27 60.07 0.50 1.16 16 10 C 0.21 5.29 2.31 -68.86 -0.16 5.13 16 11 H 0.04 1.05 7.93 -51.94 -0.41 0.64 16 12 C -0.17 -4.16 8.22 37.16 0.31 -3.85 16 13 C -0.50 -13.66 7.91 -34.44 -0.27 -13.94 16 14 H 0.06 1.71 7.12 -52.49 -0.37 1.33 16 15 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 16 N -0.90 -25.54 11.32 55.43 0.63 -24.92 16 17 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C -0.06 -0.99 9.35 -39.60 -0.37 -1.36 16 22 C -0.12 -1.71 5.89 -104.47 -0.62 -2.33 16 23 C -0.10 -1.21 9.79 36.00 0.35 -0.86 16 24 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 25 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 27 H 0.12 1.32 6.30 -52.49 -0.33 0.99 16 28 H 0.12 1.65 8.03 -52.48 -0.42 1.23 16 29 H 0.03 0.59 7.00 -51.93 -0.36 0.23 16 30 H 0.07 1.36 7.87 -51.93 -0.41 0.96 16 31 H 0.04 0.82 6.16 -51.93 -0.32 0.50 16 32 H 0.07 1.55 6.76 -51.93 -0.35 1.19 16 33 H 0.01 0.29 6.46 -51.93 -0.34 -0.04 16 34 H 0.01 0.13 6.91 -51.93 -0.36 -0.22 16 35 H 0.03 0.74 6.42 -51.93 -0.33 0.40 16 36 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.13 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 41 H 0.07 0.77 7.53 -51.92 -0.39 0.38 16 LS Contribution 323.12 15.07 4.87 4.87 Total: -1.00 -29.46 323.12 -7.99 -37.45 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -6.33 Total: -0.18 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -0.83 Total: -16.95 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.49 Total: -37.47 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.19 Total: -4.17 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.46 -7.99 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103144446.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.078 kcal (2) G-P(sol) polarization free energy of solvation -29.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds