Wall clock time and date at job start Mon Mar 30 2020 00:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99943 * 2 1 4 4 C 1.38746 * 120.05764 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94556 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05387 * 0.28104 * 5 4 3 7 7 C 1.50696 * 119.94546 * 179.69818 * 6 5 4 8 8 N 1.46898 * 109.46987 * 89.99936 * 7 6 5 9 9 C 1.46902 * 110.99754 * 66.04864 * 8 7 6 10 10 C 1.46899 * 111.00102 * 190.00188 * 8 7 6 11 11 H 1.09000 * 109.47559 * 55.00161 * 10 8 7 12 12 C 1.53004 * 109.47119 * 295.00349 * 10 8 7 13 13 C 1.50698 * 109.47277 * 174.99951 * 10 8 7 14 14 H 1.08000 * 120.00186 * 0.02562 * 13 10 8 15 15 C 1.37874 * 120.00110 * 179.97438 * 13 10 8 16 16 N 1.31515 * 120.00142 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00037 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47174 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47409 * 120.00627 * 17 15 13 20 20 H 1.48507 * 109.47345 * 240.00391 * 17 15 13 21 21 C 1.38244 * 120.10735 * 359.44975 * 6 5 4 22 22 C 1.38166 * 120.05849 * 0.54781 * 21 6 5 23 23 C 1.50703 * 120.02629 * 179.70977 * 22 21 6 24 24 H 1.08997 * 109.47389 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46947 * 300.00698 * 1 2 3 26 26 H 1.08998 * 109.47276 * 60.00138 * 1 2 3 27 27 H 1.08000 * 120.02788 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.97098 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47245 * 210.00317 * 7 6 5 30 30 H 1.09005 * 109.47037 * 330.00083 * 7 6 5 31 31 H 1.09000 * 109.47227 * 60.00251 * 9 8 7 32 32 H 1.09001 * 109.46656 * 180.02562 * 9 8 7 33 33 H 1.08997 * 109.46924 * 299.99410 * 9 8 7 34 34 H 1.09007 * 109.46822 * 299.99639 * 12 10 8 35 35 H 1.08992 * 109.47142 * 59.99425 * 12 10 8 36 36 H 1.08996 * 109.47211 * 180.02562 * 12 10 8 37 37 H 0.96997 * 120.00509 * 179.97438 * 16 15 13 38 38 H 1.08008 * 119.97003 * 180.29866 * 21 6 5 39 39 H 1.09000 * 109.47108 * 270.01965 * 23 22 21 40 40 H 1.09001 * 109.47550 * 30.02097 * 23 22 21 41 41 H 1.09005 * 109.46918 * 150.02315 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0069 7 6 3.9862 5.0184 -0.0144 8 7 4.2141 5.4595 1.3682 9 6 5.1750 4.5814 2.0492 10 6 4.6599 6.8586 1.4077 11 1 3.9398 7.4845 0.8805 12 6 6.0283 6.9772 0.7337 13 6 4.7648 7.3121 2.8410 14 1 4.5249 6.6292 3.6424 15 6 5.1683 8.5986 3.1292 16 7 5.4610 9.4302 2.1533 17 14 5.2990 9.1605 4.9058 18 1 4.9179 8.0439 5.8075 19 1 6.6964 9.5732 5.1930 20 1 4.3873 10.3113 5.1295 21 6 4.0560 2.5170 -0.0008 22 6 3.4311 1.2847 -0.0002 23 6 4.2537 0.0220 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.2129 2.3203 -0.0005 28 1 1.3340 4.5114 -0.0019 29 1 4.9420 4.9363 -0.5319 30 1 3.3561 5.7444 -0.5282 31 1 6.1252 4.5994 1.5155 32 1 5.3250 4.9303 3.0709 33 1 4.7872 3.5629 2.0667 34 1 6.7485 6.3514 1.2610 35 1 5.9524 6.6491 -0.3029 36 1 6.3593 8.0152 0.7634 37 1 5.7445 10.3355 2.3560 38 1 5.1345 2.5751 -0.0005 39 1 4.4520 -0.2825 -1.0278 40 1 5.1978 0.2034 0.5136 41 1 3.7063 -0.7682 0.5138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103144448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:48 Heat of formation + Delta-G solvation = -11.380334 kcal Electronic energy + Delta-G solvation = -19948.698703 eV Core-core repulsion = 17021.957587 eV Total energy + Delta-G solvation = -2926.741116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17193 -38.05124 -36.50248 -33.12661 -32.47830 -30.63088 -28.35367 -27.71605 -27.11358 -25.84434 -25.11272 -23.38990 -21.81363 -20.43240 -19.04333 -17.87656 -16.29893 -16.17474 -15.79260 -15.25589 -14.74628 -14.31282 -14.14989 -13.92287 -13.44624 -13.36914 -13.03822 -12.90405 -12.47986 -12.11875 -11.98977 -11.96137 -11.58170 -11.21068 -11.11541 -10.98693 -10.82911 -10.70251 -10.59304 -10.55078 -10.35486 -9.99134 -9.76957 -8.85245 -8.60036 -8.37402 -7.84150 -7.08584 -5.99372 -4.02763 1.53430 1.63553 3.29859 3.31089 3.38999 3.43931 3.91377 4.44207 4.86586 4.91615 5.02824 5.04769 5.16119 5.31529 5.32858 5.36855 5.48876 5.49968 5.70644 5.73056 5.77715 5.92110 6.07098 6.20376 6.33900 6.35862 6.45060 6.52808 6.59743 6.70929 6.85325 6.93910 6.96613 6.98906 7.15191 7.48272 7.51675 7.74442 7.86154 8.14712 8.41613 8.62779 9.03781 9.62266 11.07783 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.004131 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.806961 B = 6776.182948 C = 6945.217323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.112 3.888 4 C -0.205 4.205 5 C -0.067 4.067 6 C -0.090 4.090 7 C 0.092 3.908 8 N -0.529 5.529 9 C 0.033 3.967 10 C 0.209 3.791 11 H 0.039 0.961 12 C -0.172 4.172 13 C -0.497 4.497 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.286 1.286 20 H -0.285 1.285 21 C -0.078 4.078 22 C -0.121 4.121 23 C -0.101 4.101 24 H 0.095 0.905 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.123 0.877 28 H 0.125 0.875 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.015 0.985 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.030 0.970 35 H 0.007 0.993 36 H 0.088 0.912 37 H 0.259 0.741 38 H 0.124 0.876 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 -16.131 -5.948 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.067 3.933 4 C -0.224 4.224 5 C -0.085 4.085 6 C -0.091 4.091 7 C -0.036 4.036 8 N -0.252 5.252 9 C -0.116 4.116 10 C 0.103 3.897 11 H 0.057 0.943 12 C -0.232 4.232 13 C -0.536 4.536 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.096 4.096 22 C -0.121 4.121 23 C -0.158 4.158 24 H 0.113 0.887 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.026 0.974 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.142 0.858 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.601 -16.151 -5.712 18.359 hybrid contribution 0.588 0.707 0.513 1.053 sum -6.013 -15.445 -5.198 17.370 Atomic orbital electron populations 1.22988 0.78953 1.03403 1.01298 1.86015 1.20857 1.27232 1.89197 1.18751 0.91742 0.83939 0.98865 1.21150 0.99563 0.92377 1.09268 1.20828 0.94153 0.96800 0.96767 1.19907 0.93582 0.95268 1.00299 1.20977 0.97971 0.92138 0.92518 1.62375 1.46262 1.04853 1.11713 1.22281 0.93196 0.95807 1.00297 1.19339 0.91309 0.82318 0.96694 0.94317 1.22405 1.01076 1.04108 0.95574 1.21166 1.43925 0.96893 0.91621 0.91881 1.24924 0.95532 0.96634 0.97231 1.69894 1.46596 1.06052 1.30926 0.86480 0.77470 0.78643 0.85048 1.19752 1.21208 1.21078 1.20808 0.99597 0.90631 0.98609 1.19154 0.90513 0.95922 1.06542 1.20561 0.98748 0.94641 1.01831 0.88667 0.92781 0.92887 0.85905 0.85691 0.94797 0.90853 0.96699 0.90874 0.93632 0.95125 0.97373 0.89372 0.93104 0.85816 0.91826 0.91839 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.24 16 2 O -0.32 -3.98 9.54 -19.42 -0.19 -4.17 16 3 C 0.11 1.57 6.66 -39.22 -0.26 1.31 16 4 C -0.20 -2.80 9.04 -39.43 -0.36 -3.15 16 5 C -0.07 -1.02 9.69 -39.60 -0.38 -1.40 16 6 C -0.09 -1.47 4.89 -104.60 -0.51 -1.98 16 7 C 0.09 1.70 4.55 -4.98 -0.02 1.67 16 8 N -0.53 -11.45 4.73 -237.73 -1.13 -12.58 16 9 C 0.03 0.66 8.36 60.07 0.50 1.16 16 10 C 0.21 5.26 2.34 -68.86 -0.16 5.10 16 11 H 0.04 1.07 8.03 -51.93 -0.42 0.65 16 12 C -0.17 -4.17 8.28 37.16 0.31 -3.86 16 13 C -0.50 -13.63 7.89 -34.44 -0.27 -13.90 16 14 H 0.06 1.75 6.77 -52.49 -0.36 1.39 16 15 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 16 N -0.90 -25.48 11.32 55.43 0.63 -24.85 16 17 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.08 -1.17 7.60 -39.61 -0.30 -1.47 16 22 C -0.12 -1.71 5.89 -104.47 -0.62 -2.32 16 23 C -0.10 -1.17 9.79 36.01 0.35 -0.82 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 27 H 0.12 1.37 6.30 -52.49 -0.33 1.04 16 28 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.03 0.62 6.88 -51.93 -0.36 0.27 16 30 H 0.07 1.35 7.94 -51.93 -0.41 0.93 16 31 H 0.01 0.29 6.51 -51.93 -0.34 -0.05 16 32 H 0.07 1.59 6.41 -51.93 -0.33 1.26 16 33 H 0.04 0.83 6.15 -51.93 -0.32 0.51 16 34 H 0.03 0.72 6.48 -51.92 -0.34 0.38 16 35 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 36 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.12 1.75 8.01 -52.48 -0.42 1.33 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 41 H 0.07 0.76 7.53 -51.93 -0.39 0.36 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -29.45 322.44 -7.97 -37.41 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -6.30 Total: -0.13 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -0.83 Total: -16.94 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: -0.50 Total: -37.43 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.19 Total: -4.17 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.45 -7.97 -37.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103144448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.031 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds