Wall clock time and date at job start Mon Mar 30 2020 00:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35900 * 116.99943 * 2 1 4 4 C 1.38746 * 120.05764 * 359.97438 * 3 2 1 5 5 C 1.38126 * 119.94556 * 180.02562 * 4 3 2 6 6 C 1.38288 * 120.05387 * 0.28104 * 5 4 3 7 7 C 1.50696 * 119.94546 * 179.69818 * 6 5 4 8 8 N 1.46898 * 109.46987 * 89.99936 * 7 6 5 9 9 C 1.46902 * 110.99754 * 66.04864 * 8 7 6 10 10 C 1.46899 * 111.00102 * 190.00188 * 8 7 6 11 11 H 1.09000 * 109.47559 * 55.00161 * 10 8 7 12 12 C 1.53004 * 109.47119 * 295.00349 * 10 8 7 13 13 C 1.50698 * 109.47277 * 174.99951 * 10 8 7 14 14 H 1.08000 * 120.00186 * 0.02562 * 13 10 8 15 15 C 1.37874 * 120.00110 * 179.97438 * 13 10 8 16 16 N 1.31515 * 120.00142 * 0.02562 * 15 13 10 17 17 Si 1.86797 * 120.00037 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47174 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.47409 * 120.00627 * 17 15 13 20 20 H 1.48507 * 109.47345 * 240.00391 * 17 15 13 21 21 C 1.38244 * 120.10735 * 359.44975 * 6 5 4 22 22 C 1.38166 * 120.05849 * 0.54781 * 21 6 5 23 23 C 1.50703 * 120.02629 * 179.70977 * 22 21 6 24 24 H 1.08997 * 109.47389 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46947 * 300.00698 * 1 2 3 26 26 H 1.08998 * 109.47276 * 60.00138 * 1 2 3 27 27 H 1.08000 * 120.02788 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.97098 * 179.97438 * 5 4 3 29 29 H 1.08996 * 109.47245 * 210.00317 * 7 6 5 30 30 H 1.09005 * 109.47037 * 330.00083 * 7 6 5 31 31 H 1.09000 * 109.47227 * 60.00251 * 9 8 7 32 32 H 1.09001 * 109.46656 * 180.02562 * 9 8 7 33 33 H 1.08997 * 109.46924 * 299.99410 * 9 8 7 34 34 H 1.09007 * 109.46822 * 299.99639 * 12 10 8 35 35 H 1.08992 * 109.47142 * 59.99425 * 12 10 8 36 36 H 1.08996 * 109.47211 * 180.02562 * 12 10 8 37 37 H 0.96997 * 120.00509 * 179.97438 * 16 15 13 38 38 H 1.08008 * 119.97003 * 180.29866 * 21 6 5 39 39 H 1.09000 * 109.47108 * 270.01965 * 23 22 21 40 40 H 1.09001 * 109.47550 * 30.02097 * 23 22 21 41 41 H 1.09005 * 109.46918 * 150.02315 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2915 2.3753 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0069 7 6 3.9862 5.0184 -0.0144 8 7 4.2141 5.4595 1.3682 9 6 5.1750 4.5814 2.0492 10 6 4.6599 6.8586 1.4077 11 1 3.9398 7.4845 0.8805 12 6 6.0283 6.9772 0.7337 13 6 4.7648 7.3121 2.8410 14 1 4.5249 6.6292 3.6424 15 6 5.1683 8.5986 3.1292 16 7 5.4610 9.4302 2.1533 17 14 5.2990 9.1605 4.9058 18 1 4.9179 8.0439 5.8075 19 1 6.6964 9.5732 5.1930 20 1 4.3873 10.3113 5.1295 21 6 4.0560 2.5170 -0.0008 22 6 3.4311 1.2847 -0.0002 23 6 4.2537 0.0220 -0.0001 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 0.2129 2.3203 -0.0005 28 1 1.3340 4.5114 -0.0019 29 1 4.9420 4.9363 -0.5319 30 1 3.3561 5.7444 -0.5282 31 1 6.1252 4.5994 1.5155 32 1 5.3250 4.9303 3.0709 33 1 4.7872 3.5629 2.0667 34 1 6.7485 6.3514 1.2610 35 1 5.9524 6.6491 -0.3029 36 1 6.3593 8.0152 0.7634 37 1 5.7445 10.3355 2.3560 38 1 5.1345 2.5751 -0.0005 39 1 4.4520 -0.2825 -1.0278 40 1 5.1978 0.2034 0.5136 41 1 3.7063 -0.7682 0.5138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103144448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:31:47 Heat of formation + Delta-G solvation = -28.537763 kcal Electronic energy + Delta-G solvation = -19949.442705 eV Core-core repulsion = 17021.957587 eV Total energy + Delta-G solvation = -2927.485118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22267 -39.39473 -37.92090 -34.86668 -33.76770 -32.04800 -30.06767 -28.68508 -28.24801 -27.34809 -26.89271 -25.00058 -22.86746 -21.84581 -20.71130 -18.85424 -18.22026 -17.33367 -17.08339 -16.63565 -16.11385 -16.05151 -15.40333 -15.15955 -14.82620 -14.58535 -14.31937 -14.25652 -13.97933 -13.47536 -13.23177 -13.00378 -12.96712 -12.73793 -12.69953 -12.61507 -12.49860 -12.23560 -12.19694 -11.99490 -11.80829 -11.63451 -11.54260 -10.88262 -10.48869 -9.70132 -9.00121 -8.75926 -8.09561 -6.20271 0.42923 0.49040 1.41718 1.43841 1.55557 2.43323 2.43877 2.76568 3.19517 3.60722 3.87014 3.91595 4.00629 4.24686 4.41442 4.43227 4.44645 4.54228 4.62314 4.68808 4.71553 4.76616 4.78241 4.82400 4.87053 4.89347 4.91836 5.03875 5.16321 5.20546 5.33098 5.41991 5.51015 5.55997 5.71739 5.79992 5.80982 5.88392 6.20790 6.49216 6.51362 6.75683 6.93726 7.48965 8.96604 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.032596 B = 0.004131 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.806961 B = 6776.182948 C = 6945.217323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.328 6.328 3 C 0.110 3.890 4 C -0.203 4.203 5 C -0.079 4.079 6 C -0.109 4.109 7 C 0.098 3.902 8 N -0.539 5.539 9 C 0.042 3.958 10 C 0.214 3.786 11 H 0.007 0.993 12 C -0.158 4.158 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.012 3.988 16 N -0.921 5.921 17 Si 0.958 3.042 18 H -0.269 1.269 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.082 4.082 22 C -0.129 4.129 23 C -0.098 4.098 24 H 0.121 0.879 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.147 0.853 28 H 0.125 0.875 29 H 0.035 0.965 30 H 0.066 0.934 31 H 0.018 0.982 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.031 0.969 35 H 0.026 0.974 36 H 0.061 0.939 37 H 0.261 0.739 38 H 0.130 0.870 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 -17.985 -5.672 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.065 3.935 4 C -0.222 4.222 5 C -0.097 4.097 6 C -0.110 4.110 7 C -0.029 4.029 8 N -0.262 5.262 9 C -0.107 4.107 10 C 0.107 3.893 11 H 0.025 0.975 12 C -0.217 4.217 13 C -0.551 4.551 14 H 0.074 0.926 15 C -0.187 4.187 16 N -0.561 5.561 17 Si 0.784 3.216 18 H -0.194 1.194 19 H -0.206 1.206 20 H -0.207 1.207 21 C -0.101 4.101 22 C -0.130 4.130 23 C -0.155 4.155 24 H 0.139 0.861 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.050 0.950 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.148 0.852 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.179 -18.027 -5.442 20.153 hybrid contribution 0.666 1.173 0.372 1.399 sum -6.513 -16.854 -5.070 18.767 Atomic orbital electron populations 1.23310 0.76841 1.05433 1.01998 1.86014 1.23029 1.26336 1.88802 1.18931 0.92016 0.84643 0.97909 1.21364 1.00869 0.91607 1.08348 1.20928 0.93897 0.97668 0.97239 1.19742 0.94141 0.94376 1.02703 1.20913 0.98136 0.93386 0.90498 1.62258 1.46487 1.03403 1.14040 1.22194 0.93201 0.96326 0.98944 1.19095 0.90854 0.84052 0.95321 0.97482 1.22198 1.00473 1.02384 0.96671 1.21406 1.44026 0.97154 0.92550 0.92646 1.25669 0.95207 0.96726 1.01064 1.70016 1.47066 1.06299 1.32728 0.85503 0.77543 0.78117 0.80430 1.19358 1.20646 1.20710 1.20870 0.99903 0.90612 0.98692 1.19463 0.91174 0.96481 1.05865 1.20588 0.98747 0.93420 1.02727 0.86131 0.92297 0.91897 0.83504 0.85712 0.94698 0.91545 0.96318 0.92818 0.91588 0.94963 0.95522 0.92002 0.92998 0.85208 0.90692 0.90942 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.32 9.54 -92.42 -0.88 -8.21 16 3 C 0.11 2.86 6.66 22.50 0.15 3.01 16 4 C -0.20 -5.18 9.04 22.36 0.20 -4.98 16 5 C -0.08 -2.34 9.69 22.26 0.22 -2.12 16 6 C -0.11 -3.50 4.89 -19.85 -0.10 -3.59 16 7 C 0.10 3.63 4.55 85.56 0.39 4.02 16 8 N -0.54 -23.50 4.73 -906.05 -4.29 -27.78 16 9 C 0.04 1.66 8.36 127.69 1.07 2.73 16 10 C 0.21 10.98 2.34 44.17 0.10 11.08 16 11 H 0.01 0.41 8.03 -2.39 -0.02 0.39 16 12 C -0.16 -7.72 8.28 71.98 0.60 -7.12 16 13 C -0.51 -28.51 7.89 25.60 0.20 -28.31 16 14 H 0.06 3.10 6.77 -2.91 -0.02 3.08 16 15 C 0.01 0.65 5.30 84.65 0.45 1.10 16 16 N -0.92 -53.18 11.32 21.45 0.24 -52.94 16 17 Si 0.96 44.09 29.54 68.60 2.03 46.12 16 18 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 C -0.08 -2.37 7.60 22.25 0.17 -2.20 16 22 C -0.13 -3.41 5.89 -19.77 -0.12 -3.53 16 23 C -0.10 -2.04 9.79 71.24 0.70 -1.34 16 24 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 0.78 7.66 -2.39 -0.02 0.76 16 26 H 0.06 0.77 7.66 -2.39 -0.02 0.75 16 27 H 0.15 2.91 6.30 -2.91 -0.02 2.89 16 28 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 29 H 0.03 1.27 6.88 -2.39 -0.02 1.25 16 30 H 0.07 2.49 7.94 -2.38 -0.02 2.48 16 31 H 0.02 0.72 6.51 -2.39 -0.02 0.70 16 32 H 0.05 2.33 6.41 -2.39 -0.02 2.31 16 33 H 0.07 2.34 6.15 -2.39 -0.01 2.33 16 34 H 0.03 1.51 6.48 -2.38 -0.02 1.50 16 35 H 0.03 1.15 6.75 -2.39 -0.02 1.14 16 36 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 37 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 38 H 0.13 3.48 8.01 -2.91 -0.02 3.46 16 39 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.36 8.09 -2.39 -0.02 1.34 16 41 H 0.07 1.40 7.53 -2.38 -0.02 1.38 16 Total: -1.00 -62.63 322.44 3.25 -59.38 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.01 Total: 13.32 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 5.14 Total: -29.89 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -4.05 Total: -80.73 kcal Atomic # 8 Polarization: -7.32 SS G_CDS: -0.88 Total: -8.21 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -62.63 3.25 -59.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103144448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.842 kcal (2) G-P(sol) polarization free energy of solvation -62.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds