Wall clock time and date at job start Mon Mar 30 2020 00:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35899 * 116.99930 * 2 1 4 4 C 1.38747 * 120.05586 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94590 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.05159 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11362 * 0.02562 * 6 5 4 8 8 C 1.38163 * 120.05438 * 359.97438 * 7 6 5 9 9 C 1.50707 * 120.02715 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.46950 * 119.97971 * 9 8 7 11 11 C 1.53000 * 109.47136 * 239.98066 * 9 8 7 12 12 N 1.46900 * 109.46868 * 359.97438 * 9 8 7 13 13 C 1.46906 * 110.99472 * 179.97438 * 12 9 8 14 14 C 1.53003 * 109.46875 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.47358 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99615 * 0.02562 * 15 14 13 17 17 C 1.37866 * 120.00339 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00283 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00207 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47285 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47053 * 120.00314 * 19 17 15 22 22 H 1.48498 * 109.47392 * 239.99966 * 19 17 15 23 23 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47294 * 300.00489 * 1 2 3 25 25 H 1.08995 * 109.47056 * 60.00501 * 1 2 3 26 26 H 1.08000 * 120.03046 * 0.02562 * 4 3 2 27 27 H 1.07993 * 119.97844 * 179.72247 * 5 4 3 28 28 H 1.08004 * 119.94567 * 179.97438 * 6 5 4 29 29 H 1.08001 * 119.97538 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.46937 * 60.00241 * 10 9 8 31 31 H 1.08994 * 109.47091 * 180.02562 * 10 9 8 32 32 H 1.08998 * 109.47126 * 300.00078 * 10 9 8 33 33 H 1.08999 * 109.46896 * 60.00277 * 11 9 8 34 34 H 1.09003 * 109.46746 * 179.97438 * 11 9 8 35 35 H 1.08999 * 109.46869 * 299.99837 * 11 9 8 36 36 H 1.00898 * 111.00236 * 56.05259 * 12 9 8 37 37 H 1.08992 * 109.47624 * 300.00098 * 13 12 9 38 38 H 1.09000 * 109.47096 * 60.00425 * 13 12 9 39 39 H 1.09000 * 109.47196 * 300.00317 * 14 13 12 40 40 H 1.09006 * 109.46915 * 60.00124 * 14 13 12 41 41 H 0.96995 * 120.00393 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 -0.0011 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 0.0000 8 6 3.4311 1.2848 0.0005 9 6 4.2537 0.0221 0.0017 10 6 3.9276 -0.7979 1.2516 11 6 3.9280 -0.8000 -1.2469 12 7 5.6815 0.3679 0.0015 13 6 6.5158 -0.8412 0.0032 14 6 7.9928 -0.4416 0.0022 15 6 8.8488 -1.6819 0.0047 16 1 8.3857 -2.6576 0.0063 17 6 10.2230 -1.5711 0.0048 18 7 10.7870 -0.3829 0.0034 19 14 11.2841 -3.1084 0.0071 20 1 10.4130 -4.3111 0.0079 21 1 12.1417 -3.1197 -1.2052 22 1 12.1411 -3.1167 1.2198 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 0.2128 2.3203 -0.0005 27 1 1.3341 4.5113 -0.0060 28 1 3.7923 4.6380 -0.0014 29 1 5.1344 2.5751 0.0000 30 1 2.8682 -1.0544 1.2517 31 1 4.5229 -1.7109 1.2527 32 1 4.1597 -0.2122 2.1411 33 1 4.1604 -0.2158 -2.1373 34 1 4.5233 -1.7131 -1.2462 35 1 2.8686 -1.0565 -1.2468 36 1 5.9091 0.9649 0.7823 37 1 6.2992 -1.4310 0.8938 38 1 6.2995 -1.4333 -0.8861 39 1 8.2091 0.1479 -0.8887 40 1 8.2095 0.1507 0.8913 41 1 11.7538 -0.3049 0.0039 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103484244.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:45 Heat of formation + Delta-G solvation = -35.503884 kcal Electronic energy + Delta-G solvation = -20059.106877 eV Core-core repulsion = 17131.319685 eV Total energy + Delta-G solvation = -2927.787192 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46025 -39.02232 -37.88018 -35.49922 -33.45215 -31.24235 -30.75460 -29.70570 -28.19454 -28.05561 -26.21561 -24.00061 -22.90468 -22.21816 -20.44451 -18.90174 -18.45494 -17.25101 -17.01708 -16.59905 -16.41946 -16.02003 -15.42112 -15.30440 -15.13900 -14.68391 -14.45663 -14.30032 -13.92678 -13.44617 -13.34315 -13.13459 -12.85786 -12.76441 -12.75855 -12.51842 -12.40307 -12.28990 -12.01049 -11.89279 -11.71460 -11.43138 -11.32425 -11.12348 -10.55492 -9.74257 -9.28451 -8.96765 -8.19285 -6.30446 0.45512 0.56891 1.40445 1.41022 1.54403 2.41135 2.45530 2.88151 3.14203 3.29403 3.71745 4.03255 4.15996 4.16180 4.25309 4.37422 4.46652 4.49962 4.50777 4.60219 4.68353 4.77610 4.79812 4.81444 4.87867 4.98088 4.99084 5.08957 5.15315 5.29831 5.34607 5.42303 5.50901 5.56358 5.66412 5.72896 5.83202 5.95745 6.18850 6.35261 6.52101 6.58477 6.86915 7.38737 8.93195 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.033445 B = 0.004100 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.987705 B = 6828.162298 C = 7461.450259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.324 6.324 3 C 0.123 3.877 4 C -0.211 4.211 5 C -0.087 4.087 6 C -0.165 4.165 7 C -0.086 4.086 8 C -0.117 4.117 9 C 0.158 3.842 10 C -0.169 4.169 11 C -0.128 4.128 12 N -0.683 5.683 13 C 0.083 3.917 14 C 0.033 3.967 15 C -0.542 4.542 16 H 0.059 0.941 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.966 3.034 20 H -0.262 1.262 21 H -0.278 1.278 22 H -0.277 1.277 23 H 0.114 0.886 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.152 0.848 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.126 0.874 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.045 0.955 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.336 0.664 37 H 0.022 0.978 38 H 0.060 0.940 39 H -0.007 1.007 40 H -0.010 1.010 41 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.606 4.677 0.861 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.077 3.923 4 C -0.230 4.230 5 C -0.105 4.105 6 C -0.183 4.183 7 C -0.104 4.104 8 C -0.119 4.119 9 C 0.067 3.933 10 C -0.227 4.227 11 C -0.186 4.186 12 N -0.314 5.314 13 C -0.046 4.046 14 C -0.004 4.004 15 C -0.581 4.581 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.203 1.203 22 H -0.203 1.203 23 H 0.132 0.868 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.169 0.831 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.144 0.856 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.154 0.846 37 H 0.040 0.960 38 H 0.078 0.922 39 H 0.012 0.988 40 H 0.008 0.992 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.344 4.631 0.168 23.800 hybrid contribution 0.811 -0.661 0.894 1.376 sum -22.534 3.970 1.062 22.905 Atomic orbital electron populations 1.23319 0.77117 1.05258 1.02155 1.86123 1.22809 1.26424 1.88483 1.18851 0.91129 0.85264 0.97018 1.21460 1.00977 0.91769 1.08754 1.21268 0.94405 0.97942 0.96838 1.21327 0.94600 0.98463 1.03886 1.21089 1.00754 0.91483 0.97110 1.19220 0.90902 0.95026 1.06710 1.19592 0.86540 0.91744 0.95420 1.22440 1.03160 0.99966 0.97182 1.21809 1.02044 0.98692 0.96043 1.60781 1.03052 1.18096 1.49503 1.21830 0.92817 0.90992 0.98916 1.18916 0.91130 0.95482 0.94916 1.21630 0.92099 0.93641 1.50682 0.92266 1.25959 0.99667 0.99394 0.94651 1.70115 1.10785 1.24709 1.51591 0.85381 0.78425 0.79311 0.77807 1.18605 1.20340 1.20283 0.86817 0.91743 0.91761 0.83060 0.83158 0.84458 0.85575 0.90059 0.93016 0.93613 0.93555 0.93184 0.90143 0.84605 0.95961 0.92189 0.98820 0.99172 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.11 6.16 -92.41 -0.57 -7.68 16 3 C 0.12 3.02 6.28 22.50 0.14 3.16 16 4 C -0.21 -4.14 9.04 22.36 0.20 -3.93 16 5 C -0.09 -1.65 10.04 22.25 0.22 -1.43 16 6 C -0.16 -3.76 10.04 22.28 0.22 -3.54 16 7 C -0.09 -2.45 9.14 22.25 0.20 -2.25 16 8 C -0.12 -3.43 4.78 -19.77 -0.09 -3.52 16 9 C 0.16 5.07 0.69 2.78 0.00 5.07 16 10 C -0.17 -5.10 8.02 71.98 0.58 -4.53 16 11 C -0.13 -4.04 8.02 71.98 0.58 -3.46 16 12 N -0.68 -25.95 5.10 -473.87 -2.42 -28.37 16 13 C 0.08 3.66 4.84 86.30 0.42 4.08 16 14 C 0.03 1.82 5.23 29.85 0.16 1.98 16 15 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 16 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 17 C 0.00 0.07 5.46 84.65 0.46 0.53 16 18 N -0.93 -57.90 13.29 21.44 0.28 -57.62 16 19 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 20 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 25 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 26 H 0.15 2.02 6.30 -2.91 -0.02 2.00 16 27 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 28 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 29 H 0.13 3.90 6.40 -2.91 -0.02 3.88 16 30 H 0.08 2.22 6.14 -2.39 -0.01 2.21 16 31 H 0.05 1.65 6.40 -2.39 -0.02 1.64 16 32 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.05 1.64 6.40 -2.39 -0.02 1.62 16 35 H 0.08 2.23 6.14 -2.39 -0.01 2.22 16 36 H 0.34 12.57 7.55 -89.70 -0.68 11.89 16 37 H 0.02 0.97 6.30 -2.39 -0.02 0.96 16 38 H 0.06 2.67 6.30 -2.39 -0.02 2.65 16 39 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 40 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 41 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -67.95 322.06 4.10 -63.85 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.34 Total: 20.73 kcal Atomic # 6 Polarization: -42.49 SS G_CDS: 4.44 Total: -38.05 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -2.13 Total: -85.99 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.57 Total: -7.68 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.95 4.10 -63.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103484244.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.342 kcal (2) G-P(sol) polarization free energy of solvation -67.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds