Wall clock time and date at job start Mon Mar 30 2020 00:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38267 * 119.97255 * 2 1 4 4 C 1.38260 * 120.10908 * 180.02562 * 3 2 1 5 5 C 1.50702 * 119.97120 * 180.02562 * 4 3 2 6 6 C 1.38143 * 120.05905 * 0.02562 * 4 3 2 7 7 C 1.38733 * 119.94229 * 359.97438 * 6 4 3 8 8 O 1.35904 * 120.05706 * 179.97438 * 7 6 4 9 9 C 1.42891 * 116.99995 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.47114 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47264 * 179.97438 * 10 9 8 12 12 N 1.46503 * 109.47083 * 179.97438 * 11 10 9 13 13 C 1.46501 * 119.99758 * 270.00050 * 12 11 10 14 14 C 1.36939 * 119.99881 * 89.99808 * 12 11 10 15 15 H 1.07998 * 119.99922 * 22.34481 * 14 12 11 16 16 C 1.38810 * 119.99698 * 202.34719 * 14 12 11 17 17 N 1.31622 * 120.00390 * 11.34188 * 16 14 12 18 18 Si 1.86802 * 119.99846 * 191.34958 * 16 14 12 19 19 H 1.48493 * 109.47406 * 59.99547 * 18 16 14 20 20 H 1.48505 * 109.47237 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46902 * 299.99412 * 18 16 14 22 22 C 1.38144 * 119.97011 * 180.25497 * 2 1 3 23 23 H 1.08997 * 109.47688 * 90.00052 * 1 2 3 24 24 H 1.09003 * 109.47596 * 210.00475 * 1 2 3 25 25 H 1.09004 * 109.46787 * 329.99837 * 1 2 3 26 26 H 1.08005 * 119.94238 * 359.97438 * 3 2 1 27 27 H 1.08996 * 109.47284 * 269.98122 * 5 4 3 28 28 H 1.09002 * 109.46674 * 29.98221 * 5 4 3 29 29 H 1.08998 * 109.46880 * 149.97890 * 5 4 3 30 30 H 1.07999 * 120.02834 * 179.97438 * 6 4 3 31 31 H 1.09007 * 109.47236 * 299.99823 * 9 8 7 32 32 H 1.08998 * 109.47440 * 59.99977 * 9 8 7 33 33 H 1.08999 * 109.46920 * 300.00174 * 10 9 8 34 34 H 1.08998 * 109.47110 * 59.99623 * 10 9 8 35 35 H 1.09003 * 109.46773 * 299.99476 * 11 10 9 36 36 H 1.08998 * 109.47345 * 59.99791 * 11 10 9 37 37 H 1.08998 * 109.47372 * 94.21155 * 13 12 11 38 38 H 1.08999 * 109.46595 * 214.21248 * 13 12 11 39 39 H 1.09000 * 109.47171 * 334.20707 * 13 12 11 40 40 H 0.96994 * 120.00354 * 180.02562 * 17 16 14 41 41 H 1.08003 * 120.03023 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.3301 2.5083 0.0001 6 6 4.2752 0.0071 -0.0016 7 6 3.5844 -1.1961 -0.0016 8 8 4.2656 -2.3721 -0.0032 9 6 3.4890 -3.5716 -0.0037 10 6 4.4228 -4.7836 -0.0048 11 6 3.5913 -6.0680 -0.0047 12 7 4.4854 -7.2285 -0.0064 13 6 4.9310 -7.8080 -1.2760 14 6 4.9047 -7.7716 1.1787 15 1 4.3316 -7.6096 2.0797 16 6 6.0662 -8.5304 1.2220 17 7 6.8811 -8.5460 0.1885 18 14 6.4729 -9.5294 2.7472 19 1 5.3908 -10.5154 2.9961 20 1 7.7573 -10.2461 2.5416 21 1 6.5938 -8.6214 3.9160 22 6 2.1971 -1.1967 -0.0053 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.6564 2.1323 -0.0004 27 1 4.5108 2.8241 -1.0274 28 1 3.7388 3.2660 0.5144 29 1 5.2829 2.3805 0.5138 30 1 5.3552 0.0102 -0.0024 31 1 2.8609 -3.5981 0.8869 32 1 2.8595 -3.5966 -0.8931 33 1 5.0512 -4.7573 -0.8950 34 1 5.0520 -4.7584 0.8849 35 1 2.9633 -6.0941 0.8859 36 1 2.9618 -6.0934 -0.8941 37 1 5.8933 -7.3780 -1.5538 38 1 5.0334 -8.8876 -1.1665 39 1 4.1977 -7.5895 -2.0524 40 1 7.6926 -9.0765 0.2186 41 1 1.6571 -2.1320 -0.0099 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104959498.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:24 Heat of formation + Delta-G solvation = -10.352541 kcal Electronic energy + Delta-G solvation = -19097.470229 eV Core-core repulsion = 16170.773681 eV Total energy + Delta-G solvation = -2926.696548 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.15207 -37.84881 -35.84585 -33.65791 -32.64441 -31.00250 -29.92484 -27.35878 -27.04711 -25.94340 -25.30200 -22.34508 -21.63419 -20.58889 -20.06255 -17.40789 -16.72682 -16.10250 -15.95661 -15.86661 -14.77657 -14.19345 -13.95994 -13.77820 -13.60626 -13.38357 -13.14696 -13.03338 -12.74185 -12.65318 -12.49155 -11.96054 -11.56029 -11.54689 -11.28243 -11.13417 -10.86414 -10.80806 -10.62748 -10.51958 -10.35365 -10.06702 -9.88607 -9.73814 -8.68101 -8.53559 -8.09157 -6.76628 -5.71190 -3.17485 1.26653 1.45248 3.36865 3.42020 3.45333 3.46692 3.68872 4.51538 4.63313 4.69594 5.00724 5.12618 5.20644 5.24853 5.31449 5.33426 5.40266 5.45716 5.45948 5.49875 5.56136 5.63233 5.70133 5.79198 5.96603 6.06498 6.08232 6.29075 6.33619 6.41970 6.47167 6.55599 6.75812 6.82316 6.84507 7.07349 7.40103 7.62179 7.74834 7.82280 8.41319 9.25057 9.87865 10.36620 11.33986 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.030187 B = 0.003299 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.321585 B = 8484.917658 C = 8770.843933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.046 4.046 3 C -0.168 4.168 4 C -0.047 4.047 5 C -0.113 4.113 6 C -0.165 4.165 7 C 0.146 3.854 8 O -0.313 6.313 9 C 0.063 3.937 10 C -0.138 4.138 11 C 0.158 3.842 12 N -0.600 5.600 13 C 0.163 3.837 14 C -0.257 4.257 15 H 0.069 0.931 16 C 0.002 3.998 17 N -0.908 5.908 18 Si 0.906 3.094 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.283 1.283 22 C -0.218 4.218 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.119 0.881 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.128 0.872 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.028 0.972 38 H 0.046 0.954 39 H -0.003 1.003 40 H 0.253 0.747 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.199 18.948 -1.879 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.046 4.046 3 C -0.186 4.186 4 C -0.047 4.047 5 C -0.170 4.170 6 C -0.184 4.184 7 C 0.100 3.900 8 O -0.226 6.226 9 C -0.013 4.013 10 C -0.179 4.179 11 C 0.030 3.970 12 N -0.323 5.323 13 C 0.018 3.982 14 C -0.387 4.387 15 H 0.087 0.913 16 C -0.197 4.197 17 N -0.553 5.553 18 Si 0.736 3.264 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.209 1.209 22 C -0.237 4.237 23 H 0.090 0.910 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.146 0.854 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.015 0.985 40 H 0.063 0.937 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.824 18.755 -1.915 21.259 hybrid contribution 0.240 -0.607 0.792 1.026 sum -9.584 18.149 -1.123 20.554 Atomic orbital electron populations 1.20807 0.91182 1.02784 1.02372 1.19668 0.95831 0.92515 0.96557 1.20723 0.93384 0.97319 1.07223 1.19641 0.93609 0.94504 0.96977 1.20789 1.00003 0.93764 1.02408 1.20304 1.00239 0.89420 1.08425 1.19088 0.90492 0.86529 0.93877 1.86169 1.36435 1.12408 1.87584 1.23050 0.95204 0.82562 1.00473 1.22437 0.99451 0.92339 1.03663 1.20708 0.92091 0.85504 0.98739 1.43980 1.55480 1.29320 1.03499 1.20819 0.95108 0.98118 0.84124 1.19193 1.04174 1.27453 0.87881 0.91341 1.25051 0.95593 1.01461 0.97549 1.70058 1.12297 1.42948 1.30028 0.86310 0.77322 0.80129 0.82621 1.21057 1.21603 1.20903 1.21166 0.93132 0.98923 1.10449 0.91050 0.91445 0.91505 0.86315 0.91025 0.91489 0.91349 0.85385 0.92433 0.92607 0.91720 0.90869 0.93682 0.94333 0.95338 0.93573 0.98475 0.93667 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.01 0.36 -0.61 16 2 C -0.05 -0.52 5.88 -104.64 -0.62 -1.14 16 3 C -0.17 -1.84 9.35 -39.56 -0.37 -2.21 16 4 C -0.05 -0.54 5.88 -104.65 -0.62 -1.15 16 5 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 6 C -0.17 -2.24 9.64 -39.43 -0.38 -2.62 16 7 C 0.15 2.20 6.69 -39.22 -0.26 1.94 16 8 O -0.31 -5.33 10.14 -19.44 -0.20 -5.53 16 9 C 0.06 0.99 4.74 37.16 0.18 1.17 16 10 C -0.14 -2.68 5.91 -26.73 -0.16 -2.84 16 11 C 0.16 3.23 5.71 -4.04 -0.02 3.21 16 12 N -0.60 -15.39 2.93 -181.12 -0.53 -15.92 16 13 C 0.16 4.10 9.01 59.85 0.54 4.64 16 14 C -0.26 -7.18 9.67 -15.06 -0.15 -7.32 16 15 H 0.07 1.85 7.84 -52.49 -0.41 1.44 16 16 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 17 N -0.91 -26.85 10.59 55.49 0.59 -26.26 16 18 Si 0.91 22.08 29.57 -169.99 -5.03 17.05 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.22 -2.89 8.69 -39.43 -0.34 -3.23 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 25 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 26 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 30 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.06 0.84 7.67 -51.92 -0.40 0.44 16 32 H 0.06 0.79 7.65 -51.93 -0.40 0.39 16 33 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.04 0.88 8.03 -51.93 -0.42 0.47 16 36 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 37 H 0.03 0.77 7.42 -51.93 -0.39 0.38 16 38 H 0.05 1.24 7.19 -51.93 -0.37 0.86 16 39 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.13 1.56 6.30 -52.48 -0.33 1.23 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -30.95 338.00 -8.52 -39.47 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -6.88 Total: -3.13 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.57 Total: -10.78 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.06 Total: -42.18 kcal Atomic # 8 Polarization: -5.33 SS G_CDS: -0.20 Total: -5.53 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.95 -8.52 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104959498.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.115 kcal (2) G-P(sol) polarization free energy of solvation -30.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds