Wall clock time and date at job start Sun Mar 29 2020 23:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 119.99806 * 2 1 4 4 H 1.48504 * 109.47386 * 239.99723 * 3 2 1 5 5 H 1.48504 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47274 * 119.99835 * 3 2 1 7 7 C 1.38947 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00319 * 202.37540 * 7 2 1 9 9 N 1.37101 * 120.00323 * 22.37455 * 7 2 1 10 10 C 1.34782 * 119.99438 * 52.09721 * 9 7 2 11 11 O 1.21287 * 119.99481 * 180.02562 * 10 9 7 12 12 C 1.50694 * 120.00369 * 0.02562 * 10 9 7 13 13 C 1.53000 * 109.47425 * 179.97438 * 12 10 9 14 14 H 1.09004 * 110.34040 * 307.28449 * 13 12 10 15 15 C 1.51101 * 110.38659 * 69.69746 * 13 12 10 16 16 C 1.30518 * 111.10347 * 135.25074 * 15 13 12 17 17 C 1.51098 * 111.10747 * 359.97438 * 16 15 13 18 18 C 1.54632 * 110.38887 * 185.00219 * 13 12 10 19 19 C 1.46492 * 120.00404 * 232.10433 * 9 7 2 20 20 C 1.54271 * 110.03429 * 57.00358 * 19 9 7 21 21 C 1.54961 * 104.16381 * 217.13660 * 20 19 9 22 22 C 1.54894 * 102.77656 * 37.89079 * 21 20 19 23 23 C 1.53873 * 110.02998 * 299.78944 * 19 9 7 24 24 H 0.97003 * 120.00279 * 354.81601 * 1 2 3 25 25 H 1.09008 * 109.47042 * 59.99484 * 12 10 9 26 26 H 1.08997 * 109.47124 * 300.00357 * 12 10 9 27 27 H 1.07998 * 124.44433 * 315.24848 * 15 13 12 28 28 H 1.08006 * 124.44979 * 179.97438 * 16 15 13 29 29 H 1.09001 * 110.39052 * 224.75058 * 17 16 15 30 30 H 1.09001 * 110.48588 * 102.42044 * 17 16 15 31 31 H 1.09000 * 111.03567 * 334.58429 * 18 13 12 32 32 H 1.09003 * 111.03939 * 98.51975 * 18 13 12 33 33 H 1.09000 * 110.01918 * 178.40083 * 19 9 7 34 34 H 1.09005 * 110.48478 * 335.79018 * 20 19 9 35 35 H 1.09004 * 110.48188 * 98.42719 * 20 19 9 36 36 H 1.08999 * 110.72080 * 279.57974 * 21 20 19 37 37 H 1.09001 * 110.92066 * 156.29267 * 21 20 19 38 38 H 1.08991 * 110.48642 * 203.40685 * 22 21 20 39 39 H 1.08997 * 110.48483 * 80.75696 * 22 21 20 40 40 H 1.09000 * 110.03689 * 238.56700 * 23 19 9 41 41 H 1.08996 * 110.03347 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0279 -1.2384 0.3566 9 7 1.4008 -2.3462 -0.4509 10 6 0.8080 -2.3610 -1.6612 11 8 0.2697 -3.3719 -2.0604 12 6 0.8139 -1.1216 -2.5185 13 6 0.0805 -1.4057 -3.8309 14 1 0.4910 -2.2948 -4.3095 15 6 -1.3999 -1.5754 -3.5805 16 6 -2.1039 -0.9222 -4.4643 17 6 -1.2105 -0.2073 -5.4511 18 6 0.1818 -0.1883 -4.7789 19 6 1.3954 -3.5511 0.3822 20 6 0.7503 -3.2452 1.7498 21 6 1.5826 -4.0789 2.7566 22 6 3.0218 -3.9533 2.1980 23 6 2.8390 -4.0015 0.6669 24 1 -0.4851 0.8366 0.0759 25 1 1.8430 -0.8330 -2.7328 26 1 0.3121 -0.3115 -1.9894 27 1 -1.8202 -2.1605 -2.7759 28 1 -3.1834 -0.8960 -4.4873 29 1 -1.5661 0.8095 -5.6180 30 1 -1.1690 -0.7536 -6.3934 31 1 0.3321 0.7336 -4.2172 32 1 0.9737 -0.3299 -5.5145 33 1 0.8474 -4.3489 -0.1191 34 1 0.8277 -2.1823 1.9788 35 1 -0.2921 -3.5636 1.7595 36 1 1.2579 -5.1194 2.7570 37 1 1.5190 -3.6554 3.7589 38 1 3.6361 -4.7881 2.5353 39 1 3.4666 -3.0049 2.4994 40 1 2.9913 -5.0182 0.3046 41 1 3.5435 -3.3233 0.1856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125224090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:35 Heat of formation + Delta-G solvation = -30.106443 kcal Electronic energy + Delta-G solvation = -20991.629743 eV Core-core repulsion = 18064.076602 eV Total energy + Delta-G solvation = -2927.553141 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.14702 -37.94616 -36.35679 -34.08262 -31.51614 -30.33358 -28.37227 -27.92512 -27.09447 -24.97552 -24.00889 -20.21323 -19.96063 -19.39845 -19.26743 -17.95202 -16.39565 -15.75165 -15.35453 -15.06138 -14.79376 -14.36307 -14.19451 -13.54508 -13.33321 -12.63448 -12.45698 -12.10550 -11.52598 -11.50641 -11.30973 -11.19915 -11.04068 -11.00821 -10.76815 -10.70820 -10.54814 -10.46286 -10.41828 -10.33210 -10.24722 -9.98242 -9.89789 -9.61023 -8.71976 -8.23655 -8.12565 -7.21257 -6.39677 -4.16439 2.95484 3.11346 3.19952 3.21547 4.05125 4.26321 4.84102 4.88989 5.21068 5.25796 5.39101 5.40423 5.50425 5.62264 5.85283 6.06346 6.10371 6.11443 6.24050 6.26034 6.33142 6.33958 6.35550 6.38065 6.43894 6.52931 6.55873 6.57930 6.71255 6.75785 6.83864 6.92835 6.96891 7.14714 7.22572 7.33214 7.35908 7.52259 7.57310 8.06291 8.69217 8.95845 9.69127 10.12490 10.64145 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.007796 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.864376 B = 3590.591278 C = 4522.318460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.053 3.947 3 Si 0.900 3.100 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.080 0.920 9 N -0.450 5.450 10 C 0.514 3.486 11 O -0.614 6.614 12 C -0.127 4.127 13 C -0.056 4.056 14 H 0.078 0.922 15 C -0.102 4.102 16 C -0.215 4.215 17 C -0.091 4.091 18 C -0.123 4.123 19 C 0.132 3.868 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.271 0.729 25 H 0.072 0.928 26 H 0.119 0.881 27 H 0.122 0.878 28 H 0.114 0.886 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.051 0.949 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.828 -0.331 -1.827 2.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.154 4.154 3 Si 0.726 3.274 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.462 4.462 8 H 0.098 0.902 9 N -0.169 5.169 10 C 0.305 3.695 11 O -0.501 6.501 12 C -0.166 4.166 13 C -0.075 4.075 14 H 0.096 0.904 15 C -0.120 4.120 16 C -0.233 4.233 17 C -0.128 4.128 18 C -0.161 4.161 19 C 0.028 3.972 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.166 4.166 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.131 0.869 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.419 -0.695 -2.065 2.600 hybrid contribution 0.295 0.959 0.292 1.045 sum 1.714 0.264 -1.773 2.480 Atomic orbital electron populations 1.69952 1.06123 1.28158 1.44333 1.25522 0.95007 0.99778 0.95074 0.86424 0.79760 0.81801 0.79389 1.19422 1.20827 1.19749 1.19044 0.96868 0.84286 1.46050 0.90224 1.43440 1.51179 1.09631 1.12689 1.20343 0.78998 0.88498 0.81650 1.90472 1.50090 1.35406 1.74103 1.21826 1.00927 0.99801 0.94094 1.20869 0.93902 0.97081 0.95635 0.90413 1.23333 0.95354 0.96273 0.97016 1.23053 0.98418 1.02892 0.98943 1.21230 0.94490 0.99355 0.97709 1.22549 0.96420 0.98922 0.98176 1.21539 0.94161 0.89899 0.91598 1.22584 0.97333 1.01887 0.94003 1.22457 0.95867 0.99355 0.98429 1.22257 0.96579 1.00672 0.95884 1.22413 0.98550 1.00023 0.95583 0.91814 0.90999 0.86327 0.85979 0.86852 0.92241 0.91807 0.91254 0.91633 0.90561 0.89153 0.93213 0.92624 0.92491 0.93036 0.91732 0.93053 0.91182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.58 11.40 55.50 0.63 -20.95 16 2 C 0.05 1.27 3.49 -17.47 -0.06 1.21 16 3 Si 0.90 18.78 29.61 -169.99 -5.03 13.74 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.33 -8.11 6.91 -14.93 -0.10 -8.22 16 8 H 0.08 1.90 7.29 -52.48 -0.38 1.52 16 9 N -0.45 -10.99 2.36 -106.55 -0.25 -11.25 16 10 C 0.51 13.00 6.96 -10.99 -0.08 12.93 16 11 O -0.61 -16.58 14.27 5.55 0.08 -16.50 16 12 C -0.13 -2.88 3.47 -27.89 -0.10 -2.98 16 13 C -0.06 -1.13 2.52 -90.72 -0.23 -1.36 16 14 H 0.08 1.62 7.90 -51.93 -0.41 1.21 16 15 C -0.10 -2.07 9.26 -35.69 -0.33 -2.40 16 16 C -0.22 -3.73 10.77 -35.70 -0.38 -4.12 16 17 C -0.09 -1.39 6.81 -26.84 -0.18 -1.57 16 18 C -0.12 -2.05 6.71 -25.02 -0.17 -2.22 16 19 C 0.13 2.92 3.29 -66.82 -0.22 2.70 16 20 C -0.12 -2.47 6.41 -25.03 -0.16 -2.63 16 21 C -0.12 -2.04 6.91 -24.70 -0.17 -2.21 16 22 C -0.12 -1.90 6.83 -25.06 -0.17 -2.07 16 23 C -0.13 -2.40 6.26 -25.61 -0.16 -2.56 16 24 H 0.27 6.62 8.32 -40.82 -0.34 6.28 16 25 H 0.07 1.58 8.10 -51.92 -0.42 1.16 16 26 H 0.12 2.88 4.86 -51.93 -0.25 2.63 16 27 H 0.12 2.76 7.58 -52.49 -0.40 2.37 16 28 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.80 6.94 -51.93 -0.36 1.44 16 34 H 0.09 2.10 7.00 -51.93 -0.36 1.74 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.39 6.99 -51.93 -0.36 1.03 16 LS Contribution 319.80 15.07 4.82 4.82 Total: -1.00 -26.81 319.80 -8.99 -35.80 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.72 Total: 9.83 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: -2.51 Total: -15.49 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.38 Total: -32.20 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.08 Total: -16.50 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -26.81 -8.99 -35.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125224090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.694 kcal (2) G-P(sol) polarization free energy of solvation -26.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds