Wall clock time and date at job start Sun Mar 29 2020 23:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86797 * 119.99806 * 2 1 4 4 H 1.48504 * 109.47386 * 239.99723 * 3 2 1 5 5 H 1.48504 * 109.47124 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47274 * 119.99835 * 3 2 1 7 7 C 1.38947 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00319 * 202.37540 * 7 2 1 9 9 N 1.37101 * 120.00323 * 22.37455 * 7 2 1 10 10 C 1.34782 * 119.99438 * 52.09721 * 9 7 2 11 11 O 1.21287 * 119.99481 * 180.02562 * 10 9 7 12 12 C 1.50694 * 120.00369 * 0.02562 * 10 9 7 13 13 C 1.53000 * 109.47425 * 179.97438 * 12 10 9 14 14 H 1.09004 * 110.34040 * 307.28449 * 13 12 10 15 15 C 1.51101 * 110.38659 * 69.69746 * 13 12 10 16 16 C 1.30518 * 111.10347 * 135.25074 * 15 13 12 17 17 C 1.51098 * 111.10747 * 359.97438 * 16 15 13 18 18 C 1.54632 * 110.38887 * 185.00219 * 13 12 10 19 19 C 1.46492 * 120.00404 * 232.10433 * 9 7 2 20 20 C 1.54271 * 110.03429 * 57.00358 * 19 9 7 21 21 C 1.54961 * 104.16381 * 217.13660 * 20 19 9 22 22 C 1.54894 * 102.77656 * 37.89079 * 21 20 19 23 23 C 1.53873 * 110.02998 * 299.78944 * 19 9 7 24 24 H 0.97003 * 120.00279 * 354.81601 * 1 2 3 25 25 H 1.09008 * 109.47042 * 59.99484 * 12 10 9 26 26 H 1.08997 * 109.47124 * 300.00357 * 12 10 9 27 27 H 1.07998 * 124.44433 * 315.24848 * 15 13 12 28 28 H 1.08006 * 124.44979 * 179.97438 * 16 15 13 29 29 H 1.09001 * 110.39052 * 224.75058 * 17 16 15 30 30 H 1.09001 * 110.48588 * 102.42044 * 17 16 15 31 31 H 1.09000 * 111.03567 * 334.58429 * 18 13 12 32 32 H 1.09003 * 111.03939 * 98.51975 * 18 13 12 33 33 H 1.09000 * 110.01918 * 178.40083 * 19 9 7 34 34 H 1.09005 * 110.48478 * 335.79018 * 20 19 9 35 35 H 1.09004 * 110.48188 * 98.42719 * 20 19 9 36 36 H 1.08999 * 110.72080 * 279.57974 * 21 20 19 37 37 H 1.09001 * 110.92066 * 156.29267 * 21 20 19 38 38 H 1.08991 * 110.48642 * 203.40685 * 22 21 20 39 39 H 1.08997 * 110.48483 * 80.75696 * 22 21 20 40 40 H 1.09000 * 110.03689 * 238.56700 * 23 19 9 41 41 H 1.08996 * 110.03347 * 0.02562 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1017 1.6965 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0279 -1.2384 0.3566 9 7 1.4008 -2.3462 -0.4509 10 6 0.8080 -2.3610 -1.6612 11 8 0.2697 -3.3719 -2.0604 12 6 0.8139 -1.1216 -2.5185 13 6 0.0805 -1.4057 -3.8309 14 1 0.4910 -2.2948 -4.3095 15 6 -1.3999 -1.5754 -3.5805 16 6 -2.1039 -0.9222 -4.4643 17 6 -1.2105 -0.2073 -5.4511 18 6 0.1818 -0.1883 -4.7789 19 6 1.3954 -3.5511 0.3822 20 6 0.7503 -3.2452 1.7498 21 6 1.5826 -4.0789 2.7566 22 6 3.0218 -3.9533 2.1980 23 6 2.8390 -4.0015 0.6669 24 1 -0.4851 0.8366 0.0759 25 1 1.8430 -0.8330 -2.7328 26 1 0.3121 -0.3115 -1.9894 27 1 -1.8202 -2.1605 -2.7759 28 1 -3.1834 -0.8960 -4.4873 29 1 -1.5661 0.8095 -5.6180 30 1 -1.1690 -0.7536 -6.3934 31 1 0.3321 0.7336 -4.2172 32 1 0.9737 -0.3299 -5.5145 33 1 0.8474 -4.3489 -0.1191 34 1 0.8277 -2.1823 1.9788 35 1 -0.2921 -3.5636 1.7595 36 1 1.2579 -5.1194 2.7570 37 1 1.5190 -3.6554 3.7589 38 1 3.6361 -4.7881 2.5353 39 1 3.4666 -3.0049 2.4994 40 1 2.9913 -5.0182 0.3046 41 1 3.5435 -3.3233 0.1856 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125224090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:34 Heat of formation + Delta-G solvation = -42.396516 kcal Electronic energy + Delta-G solvation = -20992.162681 eV Core-core repulsion = 18064.076602 eV Total energy + Delta-G solvation = -2928.086079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93959 -39.46381 -38.05374 -35.96098 -33.34819 -32.01650 -29.76539 -29.47661 -28.71690 -26.81550 -25.64857 -21.78916 -21.41811 -21.05959 -21.00351 -19.49675 -18.27063 -17.47957 -17.03380 -16.75688 -16.38903 -15.92972 -15.78109 -15.26456 -14.95223 -14.25146 -14.19094 -13.73675 -13.27021 -13.13269 -12.93583 -12.70674 -12.63944 -12.57893 -12.36741 -12.26382 -12.09346 -12.03480 -11.89226 -11.84227 -11.81869 -11.55298 -11.39443 -11.32782 -10.58272 -10.08804 -9.70490 -9.12689 -8.27496 -6.11019 1.44250 1.46308 1.50087 1.56447 2.22202 2.37842 2.99805 3.10066 3.80803 3.84203 3.86594 3.90759 4.13525 4.22853 4.41512 4.54798 4.60961 4.67919 4.75185 4.77946 4.78773 4.83537 4.88973 4.90768 4.93079 4.99150 5.06512 5.13585 5.19229 5.23459 5.30395 5.38035 5.41927 5.50036 5.53915 5.60575 5.68353 5.74068 6.06528 6.17511 6.76266 7.06075 7.74647 8.20104 8.76721 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.018664 B = 0.007796 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.864376 B = 3590.591278 C = 4522.318460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.023 3.977 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.346 4.346 8 H 0.083 0.917 9 N -0.454 5.454 10 C 0.493 3.507 11 O -0.644 6.644 12 C -0.119 4.119 13 C -0.055 4.055 14 H 0.061 0.939 15 C -0.151 4.151 16 C -0.182 4.182 17 C -0.087 4.087 18 C -0.117 4.117 19 C 0.119 3.881 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.107 4.107 23 C -0.121 4.121 24 H 0.272 0.728 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.083 0.917 28 H 0.134 0.866 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.877 0.760 -2.221 3.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.181 4.181 3 Si 0.783 3.217 4 H -0.185 1.185 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.473 4.473 8 H 0.101 0.899 9 N -0.173 5.173 10 C 0.285 3.715 11 O -0.533 6.533 12 C -0.158 4.158 13 C -0.073 4.073 14 H 0.079 0.921 15 C -0.169 4.169 16 C -0.200 4.200 17 C -0.124 4.124 18 C -0.155 4.155 19 C 0.015 3.985 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.159 4.159 24 H 0.081 0.919 25 H 0.092 0.908 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.152 0.848 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.108 0.892 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.487 0.391 -2.439 3.505 hybrid contribution -0.116 0.573 0.425 0.722 sum 2.371 0.963 -2.014 3.257 Atomic orbital electron populations 1.70066 1.07673 1.28842 1.44957 1.26169 0.95422 1.02395 0.94135 0.85502 0.78580 0.77800 0.79786 1.18542 1.20887 1.19023 1.19231 0.97074 0.84616 1.46414 0.89908 1.43667 1.50489 1.10456 1.12702 1.20942 0.79099 0.89121 0.82312 1.90429 1.51464 1.36594 1.74828 1.21751 1.01128 0.97965 0.94978 1.20840 0.93305 0.98264 0.94930 0.92066 1.23098 0.96118 0.99321 0.98412 1.23470 0.99693 0.99595 0.97225 1.21308 0.92704 1.00833 0.97575 1.22557 0.98402 0.96736 0.97789 1.21770 0.96449 0.88600 0.91700 1.22474 0.97409 1.00833 0.94731 1.22423 0.94947 0.99613 0.97936 1.22229 0.96823 1.01997 0.93434 1.22345 0.95513 1.00251 0.97835 0.91860 0.90788 0.87707 0.89871 0.84796 0.89570 0.89384 0.91459 0.89240 0.93139 0.92036 0.94576 0.90765 0.90571 0.89575 0.92052 0.91641 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.94 11.40 21.66 0.25 -45.70 16 2 C 0.02 1.13 3.49 84.93 0.30 1.43 16 3 Si 0.96 38.17 29.61 68.60 2.03 40.20 16 4 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 5 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 6 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 7 C -0.35 -17.12 6.91 84.04 0.58 -16.54 16 8 H 0.08 3.99 7.29 -2.91 -0.02 3.97 16 9 N -0.45 -23.16 2.36 -609.39 -1.44 -24.60 16 10 C 0.49 26.32 6.96 87.65 0.61 26.93 16 11 O -0.64 -37.10 14.27 -3.05 -0.04 -37.15 16 12 C -0.12 -5.58 3.47 29.85 0.10 -5.47 16 13 C -0.05 -2.25 2.52 -10.86 -0.03 -2.27 16 14 H 0.06 2.65 7.90 -2.39 -0.02 2.63 16 15 C -0.15 -6.37 9.26 26.27 0.24 -6.13 16 16 C -0.18 -6.07 10.77 26.27 0.28 -5.79 16 17 C -0.09 -2.38 6.81 30.52 0.21 -2.17 16 18 C -0.12 -3.68 6.71 31.70 0.21 -3.46 16 19 C 0.12 5.44 3.29 45.72 0.15 5.59 16 20 C -0.12 -4.91 6.41 31.70 0.20 -4.71 16 21 C -0.11 -3.50 6.91 31.91 0.22 -3.28 16 22 C -0.11 -3.27 6.83 31.67 0.22 -3.06 16 23 C -0.12 -4.52 6.26 31.32 0.20 -4.32 16 24 H 0.27 13.56 8.32 -92.71 -0.77 12.79 16 25 H 0.07 3.32 8.10 -2.38 -0.02 3.30 16 26 H 0.11 5.25 4.86 -2.39 -0.01 5.24 16 27 H 0.08 4.09 7.58 -2.91 -0.02 4.07 16 28 H 0.13 3.85 8.06 -2.91 -0.02 3.83 16 29 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.13 7.91 -2.39 -0.02 2.11 16 32 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 33 H 0.05 2.53 6.94 -2.39 -0.02 2.51 16 34 H 0.06 2.95 7.00 -2.38 -0.02 2.94 16 35 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.06 2.27 6.99 -2.39 -0.02 2.25 16 Total: -1.00 -61.25 319.80 5.28 -55.97 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.99 Total: 34.53 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 3.50 Total: -23.26 kcal Atomic # 7 Polarization: -69.11 SS G_CDS: -1.19 Total: -70.30 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.04 Total: -37.15 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Total: -61.25 5.28 -55.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125224090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.574 kcal (2) G-P(sol) polarization free energy of solvation -61.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds