Wall clock time and date at job start Sun Mar 29 2020 23:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 119.99948 * 2 1 4 4 H 1.48500 * 109.47415 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47369 * 299.99587 * 3 2 1 6 6 H 1.48505 * 109.47277 * 59.99608 * 3 2 1 7 7 C 1.38953 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99559 * 199.95329 * 7 2 1 9 9 N 1.37094 * 120.00014 * 19.96230 * 7 2 1 10 10 C 1.34773 * 119.99984 * 53.84084 * 9 7 2 11 11 O 1.21294 * 119.99882 * 185.22986 * 10 9 7 12 12 C 1.50697 * 120.00177 * 5.22143 * 10 9 7 13 13 H 1.09000 * 109.64176 * 308.84454 * 12 10 9 14 14 C 1.53027 * 109.64207 * 69.26309 * 12 10 9 15 15 C 1.50541 * 109.88851 * 169.16001 * 14 12 10 16 16 C 1.29445 * 124.16709 * 343.00455 * 15 14 12 17 17 C 1.50073 * 124.06791 * 0.40514 * 16 15 14 18 18 C 1.53024 * 110.14998 * 342.87307 * 17 16 15 19 19 C 1.46498 * 120.00019 * 233.83944 * 9 7 2 20 20 C 1.54264 * 110.03423 * 55.41879 * 19 9 7 21 21 C 1.54888 * 104.19580 * 217.10862 * 20 19 9 22 22 C 1.54885 * 102.75018 * 37.94304 * 21 20 19 23 23 C 1.53882 * 110.03190 * 298.25397 * 19 9 7 24 24 H 0.96997 * 120.00311 * 4.84054 * 1 2 3 25 25 H 1.08997 * 109.35270 * 289.54018 * 14 12 10 26 26 H 1.08997 * 109.35675 * 49.12653 * 14 12 10 27 27 H 1.08003 * 117.87686 * 162.91587 * 15 14 12 28 28 H 1.07997 * 117.96955 * 180.39139 * 16 15 14 29 29 H 1.08999 * 109.35481 * 222.66702 * 17 16 15 30 30 H 1.09004 * 109.24472 * 103.01317 * 17 16 15 31 31 H 1.09002 * 109.64344 * 289.75161 * 18 17 16 32 32 H 1.08993 * 109.81262 * 169.22107 * 18 17 16 33 33 H 1.09000 * 110.01855 * 176.86792 * 19 9 7 34 34 H 1.09004 * 110.48203 * 335.78419 * 20 19 9 35 35 H 1.08997 * 110.48372 * 98.42706 * 20 19 9 36 36 H 1.09002 * 110.75620 * 279.62277 * 21 20 19 37 37 H 1.09004 * 110.75684 * 156.26195 * 21 20 19 38 38 H 1.09003 * 110.48450 * 203.37775 * 22 21 20 39 39 H 1.09001 * 110.48889 * 80.73802 * 22 21 20 40 40 H 1.09000 * 110.03168 * 238.57021 * 23 19 9 41 41 H 1.09001 * 110.02728 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8892 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0403 -1.2312 0.3198 9 7 1.3851 -2.3552 -0.4043 10 6 0.7787 -2.4062 -1.6068 11 8 0.1464 -3.3909 -1.9258 12 6 0.8860 -1.2398 -2.5549 13 1 0.6135 -0.3203 -2.0370 14 6 2.3207 -1.1308 -3.0761 15 6 2.3789 -0.1470 -4.2140 16 6 1.3439 0.2612 -4.8758 17 6 -0.0619 -0.1830 -4.5955 18 6 -0.0531 -1.4572 -3.7482 19 6 1.3779 -3.5305 0.4702 20 6 0.7876 -3.1613 1.8468 21 6 1.6311 -3.9815 2.8542 22 6 3.0535 -3.9121 2.2451 23 6 2.8186 -4.0079 0.7235 24 1 -0.4850 0.8370 -0.0709 25 1 2.9735 -0.7970 -2.2696 26 1 2.6531 -2.1080 -3.4262 27 1 3.3458 0.2438 -4.4947 28 1 1.5019 0.9652 -5.6793 29 1 -0.5734 -0.3793 -5.5378 30 1 -0.5872 0.6057 -4.0568 31 1 0.3045 -2.2939 -4.3483 32 1 -1.0600 -1.6684 -3.3882 33 1 0.7940 -4.3305 0.0152 34 1 0.8995 -2.0936 2.0359 35 1 -0.2615 -3.4516 1.9023 36 1 1.2810 -5.0126 2.9017 37 1 1.6106 -3.5197 3.8413 38 1 3.6580 -4.7505 2.5914 39 1 3.5313 -2.9658 2.4986 40 1 2.9337 -5.0400 0.3922 41 1 3.5231 -3.3654 0.1954 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125300962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:44 Heat of formation + Delta-G solvation = -38.519113 kcal Electronic energy + Delta-G solvation = -21429.267668 eV Core-core repulsion = 18501.349726 eV Total energy + Delta-G solvation = -2927.917942 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.30582 -37.53887 -36.06849 -34.10954 -31.45468 -30.31404 -30.03051 -27.91956 -26.92383 -24.78740 -22.91064 -22.07859 -19.97070 -19.32120 -19.27061 -17.14888 -16.66573 -15.70393 -15.32389 -15.01460 -14.58676 -14.25523 -13.87943 -13.21981 -13.05713 -12.78065 -12.60098 -12.44211 -12.25513 -11.69705 -11.57564 -11.45574 -11.14527 -10.91656 -10.89110 -10.60990 -10.47438 -10.37849 -10.31829 -10.09167 -9.97371 -9.87839 -9.61071 -9.56662 -8.68358 -8.46015 -8.10456 -7.22830 -6.37163 -4.19677 2.79442 3.11209 3.23001 3.23787 4.05934 4.19569 4.84040 4.93002 5.31351 5.38737 5.40137 5.46243 5.57629 5.78583 5.89673 6.04567 6.10984 6.15636 6.24608 6.26969 6.31578 6.35673 6.37467 6.44672 6.46380 6.54083 6.57396 6.67810 6.76151 6.78075 6.82969 6.96933 7.00335 7.15209 7.25724 7.34737 7.35805 7.47278 7.50375 8.05067 8.70028 8.96847 9.66949 10.10341 10.65074 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.008796 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.446621 B = 3182.380137 C = 3871.291374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.056 3.944 3 Si 0.890 3.110 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.282 1.282 7 C -0.330 4.330 8 H 0.080 0.920 9 N -0.449 5.449 10 C 0.522 3.478 11 O -0.612 6.612 12 C -0.095 4.095 13 H 0.117 0.883 14 C -0.077 4.077 15 C -0.144 4.144 16 C -0.168 4.168 17 C -0.088 4.088 18 C -0.097 4.097 19 C 0.131 3.869 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.268 0.732 25 H 0.090 0.910 26 H 0.062 0.938 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.049 0.951 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -0.231 -1.687 4.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.151 4.151 3 Si 0.715 3.285 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.207 1.207 7 C -0.458 4.458 8 H 0.097 0.903 9 N -0.168 5.168 10 C 0.313 3.687 11 O -0.498 6.498 12 C -0.116 4.116 13 H 0.134 0.866 14 C -0.114 4.114 15 C -0.162 4.162 16 C -0.186 4.186 17 C -0.125 4.125 18 C -0.135 4.135 19 C 0.027 3.973 20 C -0.157 4.157 21 C -0.161 4.161 22 C -0.154 4.154 23 C -0.166 4.166 24 H 0.079 0.921 25 H 0.108 0.892 26 H 0.080 0.920 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.729 -0.596 -1.752 4.163 hybrid contribution 0.367 1.125 0.068 1.185 sum 4.096 0.529 -1.684 4.461 Atomic orbital electron populations 1.70071 1.06030 1.28037 1.44407 1.25482 0.94909 0.99713 0.94993 0.86463 0.80696 0.83053 0.78279 1.18877 1.19969 1.20748 1.19064 0.95209 0.84195 1.47313 0.90267 1.43368 1.50570 1.10605 1.12274 1.20308 0.79229 0.87042 0.82142 1.90474 1.45632 1.35779 1.77881 1.21284 0.94787 1.00967 0.94518 0.86580 1.20428 0.97575 0.97370 0.96072 1.22260 0.97810 0.98825 0.97310 1.21981 0.95193 1.01213 1.00210 1.20443 0.94339 0.98250 0.99426 1.21371 1.00189 0.95929 0.95998 1.21564 0.94274 0.90301 0.91173 1.22557 0.97435 1.01984 0.93761 1.22449 0.95934 0.99404 0.98343 1.22252 0.96672 1.00676 0.95764 1.22419 0.98496 0.99865 0.95782 0.92112 0.89192 0.91978 0.88641 0.88870 0.91924 0.91392 0.92470 0.91788 0.90641 0.89115 0.93210 0.92615 0.92498 0.93057 0.91724 0.93074 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.86 11.89 55.50 0.66 -21.20 16 2 C 0.06 1.35 3.36 -17.47 -0.06 1.29 16 3 Si 0.89 18.86 29.60 -169.99 -5.03 13.83 16 4 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 6 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.33 -7.86 5.30 -14.93 -0.08 -7.94 16 8 H 0.08 1.87 7.37 -52.48 -0.39 1.48 16 9 N -0.45 -10.85 2.34 -106.54 -0.25 -11.10 16 10 C 0.52 13.25 6.33 -10.99 -0.07 13.18 16 11 O -0.61 -16.95 15.37 5.54 0.09 -16.86 16 12 C -0.09 -2.12 1.70 -91.55 -0.16 -2.28 16 13 H 0.12 2.82 4.70 -51.93 -0.24 2.57 16 14 C -0.08 -1.53 5.24 -27.95 -0.15 -1.68 16 15 C -0.14 -2.49 9.81 -35.67 -0.35 -2.84 16 16 C -0.17 -2.77 9.80 -35.90 -0.35 -3.12 16 17 C -0.09 -1.50 6.11 -28.17 -0.17 -1.67 16 18 C -0.10 -1.98 4.64 -26.51 -0.12 -2.11 16 19 C 0.13 2.89 3.30 -66.81 -0.22 2.67 16 20 C -0.12 -2.46 6.40 -25.07 -0.16 -2.62 16 21 C -0.12 -2.04 6.91 -24.74 -0.17 -2.21 16 22 C -0.12 -1.88 6.83 -25.08 -0.17 -2.05 16 23 C -0.13 -2.36 6.28 -25.61 -0.16 -2.53 16 24 H 0.27 6.60 8.32 -40.82 -0.34 6.26 16 25 H 0.09 1.83 6.74 -51.93 -0.35 1.48 16 26 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 27 H 0.10 1.43 8.06 -52.48 -0.42 1.01 16 28 H 0.09 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 32 H 0.06 1.39 8.03 -51.93 -0.42 0.98 16 33 H 0.08 1.79 6.95 -51.93 -0.36 1.43 16 34 H 0.09 2.11 6.94 -51.93 -0.36 1.75 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 1.36 7.09 -51.93 -0.37 0.99 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -27.28 316.15 -8.85 -36.14 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -6.69 Total: 8.35 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -2.39 Total: -13.91 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.41 Total: -32.31 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.09 Total: -16.86 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.28 -8.85 -36.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125300962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.380 kcal (2) G-P(sol) polarization free energy of solvation -27.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds