Wall clock time and date at job start Sun Mar 29 2020 23:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 119.99948 * 2 1 4 4 H 1.48500 * 109.47415 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47369 * 299.99587 * 3 2 1 6 6 H 1.48505 * 109.47277 * 59.99608 * 3 2 1 7 7 C 1.38953 * 119.99918 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99559 * 199.95329 * 7 2 1 9 9 N 1.37094 * 120.00014 * 19.96230 * 7 2 1 10 10 C 1.34773 * 119.99984 * 53.84084 * 9 7 2 11 11 O 1.21294 * 119.99882 * 185.22986 * 10 9 7 12 12 C 1.50697 * 120.00177 * 5.22143 * 10 9 7 13 13 H 1.09000 * 109.64176 * 308.84454 * 12 10 9 14 14 C 1.53027 * 109.64207 * 69.26309 * 12 10 9 15 15 C 1.50541 * 109.88851 * 169.16001 * 14 12 10 16 16 C 1.29445 * 124.16709 * 343.00455 * 15 14 12 17 17 C 1.50073 * 124.06791 * 0.40514 * 16 15 14 18 18 C 1.53024 * 110.14998 * 342.87307 * 17 16 15 19 19 C 1.46498 * 120.00019 * 233.83944 * 9 7 2 20 20 C 1.54264 * 110.03423 * 55.41879 * 19 9 7 21 21 C 1.54888 * 104.19580 * 217.10862 * 20 19 9 22 22 C 1.54885 * 102.75018 * 37.94304 * 21 20 19 23 23 C 1.53882 * 110.03190 * 298.25397 * 19 9 7 24 24 H 0.96997 * 120.00311 * 4.84054 * 1 2 3 25 25 H 1.08997 * 109.35270 * 289.54018 * 14 12 10 26 26 H 1.08997 * 109.35675 * 49.12653 * 14 12 10 27 27 H 1.08003 * 117.87686 * 162.91587 * 15 14 12 28 28 H 1.07997 * 117.96955 * 180.39139 * 16 15 14 29 29 H 1.08999 * 109.35481 * 222.66702 * 17 16 15 30 30 H 1.09004 * 109.24472 * 103.01317 * 17 16 15 31 31 H 1.09002 * 109.64344 * 289.75161 * 18 17 16 32 32 H 1.08993 * 109.81262 * 169.22107 * 18 17 16 33 33 H 1.09000 * 110.01855 * 176.86792 * 19 9 7 34 34 H 1.09004 * 110.48203 * 335.78419 * 20 19 9 35 35 H 1.08997 * 110.48372 * 98.42706 * 20 19 9 36 36 H 1.09002 * 110.75620 * 279.62277 * 21 20 19 37 37 H 1.09004 * 110.75684 * 156.26195 * 21 20 19 38 38 H 1.09003 * 110.48450 * 203.37775 * 22 21 20 39 39 H 1.09001 * 110.48889 * 80.73802 * 22 21 20 40 40 H 1.09000 * 110.03168 * 238.57021 * 23 19 9 41 41 H 1.09001 * 110.02728 * 359.97438 * 23 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 0.0006 5 1 1.8894 2.3964 -1.2126 6 1 1.8892 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0403 -1.2312 0.3198 9 7 1.3851 -2.3552 -0.4043 10 6 0.7787 -2.4062 -1.6068 11 8 0.1464 -3.3909 -1.9258 12 6 0.8860 -1.2398 -2.5549 13 1 0.6135 -0.3203 -2.0370 14 6 2.3207 -1.1308 -3.0761 15 6 2.3789 -0.1470 -4.2140 16 6 1.3439 0.2612 -4.8758 17 6 -0.0619 -0.1830 -4.5955 18 6 -0.0531 -1.4572 -3.7482 19 6 1.3779 -3.5305 0.4702 20 6 0.7876 -3.1613 1.8468 21 6 1.6311 -3.9815 2.8542 22 6 3.0535 -3.9121 2.2451 23 6 2.8186 -4.0079 0.7235 24 1 -0.4850 0.8370 -0.0709 25 1 2.9735 -0.7970 -2.2696 26 1 2.6531 -2.1080 -3.4262 27 1 3.3458 0.2438 -4.4947 28 1 1.5019 0.9652 -5.6793 29 1 -0.5734 -0.3793 -5.5378 30 1 -0.5872 0.6057 -4.0568 31 1 0.3045 -2.2939 -4.3483 32 1 -1.0600 -1.6684 -3.3882 33 1 0.7940 -4.3305 0.0152 34 1 0.8995 -2.0936 2.0359 35 1 -0.2615 -3.4516 1.9023 36 1 1.2810 -5.0126 2.9017 37 1 1.6106 -3.5197 3.8413 38 1 3.6580 -4.7505 2.5914 39 1 3.5313 -2.9658 2.4986 40 1 2.9337 -5.0400 0.3922 41 1 3.5231 -3.3654 0.1954 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125300962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:56:44 Heat of formation + Delta-G solvation = -51.485835 kcal Electronic energy + Delta-G solvation = -21429.829947 eV Core-core repulsion = 18501.349726 eV Total energy + Delta-G solvation = -2928.480221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 263.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11956 -39.09577 -37.77719 -35.96787 -33.30719 -31.89072 -31.52577 -29.46207 -28.56154 -26.68343 -24.49531 -23.65954 -21.43492 -21.11910 -20.97940 -18.71513 -18.39859 -17.44703 -17.08406 -16.67134 -16.17393 -15.88845 -15.56987 -14.88626 -14.60207 -14.41684 -14.14787 -14.09217 -13.86905 -13.37106 -13.17742 -13.06992 -12.94728 -12.64163 -12.53890 -12.27246 -12.04460 -11.88200 -11.82460 -11.75377 -11.51350 -11.37024 -11.30779 -11.14904 -10.56412 -10.04346 -9.81300 -9.14676 -8.25965 -6.13571 1.41299 1.48232 1.48870 1.57713 2.18336 2.35438 3.06024 3.06996 3.87047 3.90205 3.92696 3.99584 4.13295 4.24661 4.48844 4.53083 4.57260 4.63885 4.70218 4.72268 4.75898 4.80164 4.84224 4.92003 4.99685 5.07894 5.09605 5.13297 5.17063 5.23459 5.26935 5.41870 5.43112 5.52106 5.56299 5.61274 5.65608 5.85134 6.14032 6.16826 6.77243 7.07205 7.72082 8.18142 8.77688 Molecular weight = 263.16amu Principal moments of inertia in cm(-1) A = 0.019461 B = 0.008796 C = 0.007231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.446621 B = 3182.380137 C = 3871.291374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.027 3.973 3 Si 0.945 3.055 4 H -0.251 1.251 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.331 4.331 8 H 0.084 0.916 9 N -0.451 5.451 10 C 0.501 3.499 11 O -0.650 6.650 12 C -0.093 4.093 13 H 0.100 0.900 14 C -0.072 4.072 15 C -0.159 4.159 16 C -0.161 4.161 17 C -0.085 4.085 18 C -0.095 4.095 19 C 0.117 3.883 20 C -0.116 4.116 21 C -0.112 4.112 22 C -0.107 4.107 23 C -0.120 4.120 24 H 0.269 0.731 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.034 0.966 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.149 0.721 -1.867 6.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.174 1.174 5 H -0.197 1.197 6 H -0.211 1.211 7 C -0.459 4.459 8 H 0.102 0.898 9 N -0.169 5.169 10 C 0.293 3.707 11 O -0.539 6.539 12 C -0.114 4.114 13 H 0.118 0.882 14 C -0.109 4.109 15 C -0.177 4.177 16 C -0.179 4.179 17 C -0.122 4.122 18 C -0.133 4.133 19 C 0.013 3.987 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.145 4.145 23 C -0.159 4.159 24 H 0.078 0.922 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.143 0.857 28 H 0.148 0.852 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.714 0.356 -1.910 6.036 hybrid contribution -0.324 0.757 0.161 0.839 sum 5.390 1.113 -1.749 5.775 Atomic orbital electron populations 1.70167 1.07645 1.28751 1.45606 1.26088 0.95225 1.02222 0.94207 0.85601 0.80270 0.79295 0.77948 1.17416 1.19725 1.21109 1.19212 0.95311 0.84284 1.47075 0.89807 1.43578 1.49754 1.11333 1.12221 1.20995 0.79143 0.87610 0.82989 1.90426 1.47381 1.37377 1.78697 1.21255 0.97099 0.98648 0.94435 0.88221 1.20332 0.95291 0.98219 0.97050 1.22326 0.99755 0.98883 0.96702 1.22242 0.94039 1.01072 1.00559 1.20459 0.95778 0.96070 0.99920 1.21331 0.98192 0.97908 0.95859 1.21809 0.96574 0.89088 0.91258 1.22450 0.97470 1.00899 0.94593 1.22415 0.95072 0.99662 0.97798 1.22225 0.96782 1.02066 0.93386 1.22344 0.95391 1.00187 0.97939 0.92161 0.90034 0.92564 0.85651 0.85216 0.89052 0.91591 0.92971 0.94353 0.93295 0.91956 0.94738 0.90821 0.90622 0.89619 0.91933 0.91664 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.75 11.89 21.66 0.26 -46.49 16 2 C 0.03 1.29 3.36 84.93 0.29 1.58 16 3 Si 0.95 38.16 29.60 68.60 2.03 40.20 16 4 H -0.25 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.33 -16.00 5.30 84.04 0.45 -15.55 16 8 H 0.08 3.93 7.37 -2.91 -0.02 3.91 16 9 N -0.45 -22.56 2.34 -609.37 -1.42 -23.98 16 10 C 0.50 26.58 6.33 87.66 0.55 27.13 16 11 O -0.65 -38.04 15.37 -3.07 -0.05 -38.09 16 12 C -0.09 -4.29 1.70 -11.40 -0.02 -4.31 16 13 H 0.10 4.94 4.70 -2.39 -0.01 4.93 16 14 C -0.07 -2.82 5.24 29.81 0.16 -2.67 16 15 C -0.16 -5.10 9.81 27.18 0.27 -4.83 16 16 C -0.16 -4.82 9.80 27.04 0.27 -4.56 16 17 C -0.09 -2.79 6.11 29.66 0.18 -2.61 16 18 C -0.09 -3.97 4.64 30.73 0.14 -3.82 16 19 C 0.12 5.29 3.30 45.72 0.15 5.44 16 20 C -0.12 -4.87 6.40 31.67 0.20 -4.67 16 21 C -0.11 -3.48 6.91 31.88 0.22 -3.26 16 22 C -0.11 -3.20 6.83 31.67 0.22 -2.98 16 23 C -0.12 -4.39 6.28 31.32 0.20 -4.19 16 24 H 0.27 13.54 8.32 -92.71 -0.77 12.76 16 25 H 0.08 3.30 6.74 -2.39 -0.02 3.28 16 26 H 0.06 2.23 8.10 -2.39 -0.02 2.21 16 27 H 0.13 3.29 8.06 -2.91 -0.02 3.26 16 28 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 29 H 0.09 2.46 8.14 -2.39 -0.02 2.45 16 30 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 31 H 0.05 2.18 8.13 -2.39 -0.02 2.16 16 32 H 0.04 1.75 8.03 -2.39 -0.02 1.73 16 33 H 0.05 2.44 6.95 -2.39 -0.02 2.42 16 34 H 0.06 2.98 6.94 -2.38 -0.02 2.96 16 35 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.08 2.10 8.14 -2.38 -0.02 2.09 16 38 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.06 2.29 7.09 -2.39 -0.02 2.27 16 Total: -1.00 -61.46 316.15 5.07 -56.39 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 0.99 Total: 31.29 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 3.26 Total: -19.30 kcal Atomic # 7 Polarization: -69.31 SS G_CDS: -1.17 Total: -70.48 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.05 Total: -38.09 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 2.03 Total: 40.20 kcal Total: -61.46 5.07 -56.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125300962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.901 kcal (2) G-P(sol) polarization free energy of solvation -61.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds